Wall clock time and date at job start Mon Mar 30 2020 00:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00149 * 2 1 4 4 H 1.08002 * 120.00675 * 202.34787 * 3 2 1 5 5 C 1.38810 * 119.99607 * 22.35600 * 3 2 1 6 6 N 1.31614 * 120.00688 * 11.33798 * 5 3 2 7 7 Si 1.86809 * 119.99936 * 191.33952 * 5 3 2 8 8 H 1.48498 * 109.46999 * 89.99705 * 7 5 3 9 9 H 1.48492 * 109.47340 * 209.99755 * 7 5 3 10 10 H 1.48493 * 109.46986 * 330.00216 * 7 5 3 11 11 C 1.46509 * 119.99947 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.46899 * 269.99450 * 11 2 1 13 13 N 1.46499 * 109.47117 * 179.97438 * 12 11 2 14 14 C 1.34780 * 120.00448 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99334 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00251 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46832 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.36038 * 55.27735 * 17 16 14 19 19 C 1.50065 * 109.35880 * 295.68569 * 17 16 14 20 20 C 1.29448 * 124.07834 * 222.66499 * 19 17 16 21 21 C 1.50063 * 124.07256 * 0.46990 * 20 19 17 22 22 C 1.53014 * 110.14885 * 342.87018 * 21 20 19 23 23 C 1.53032 * 109.35667 * 175.00220 * 17 16 14 24 24 H 1.09001 * 109.46780 * 274.20598 * 1 2 3 25 25 H 1.08998 * 109.47631 * 34.20188 * 1 2 3 26 26 H 1.09002 * 109.47194 * 154.20927 * 1 2 3 27 27 H 0.96997 * 120.00870 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46859 * 149.99577 * 11 2 1 29 29 H 1.08997 * 109.46864 * 29.99758 * 11 2 1 30 30 H 1.09004 * 109.47262 * 60.00373 * 12 11 2 31 31 H 1.08997 * 109.47614 * 299.99849 * 12 11 2 32 32 H 0.97005 * 119.99910 * 0.02562 * 13 12 11 33 33 H 1.08997 * 109.46868 * 300.00464 * 16 14 13 34 34 H 1.08994 * 109.46984 * 60.00307 * 16 14 13 35 35 H 1.08004 * 117.95882 * 42.64338 * 19 17 16 36 36 H 1.08003 * 117.95952 * 180.44701 * 20 19 17 37 37 H 1.09000 * 109.35360 * 222.65660 * 21 20 19 38 38 H 1.09002 * 109.35807 * 103.07918 * 21 20 19 39 39 H 1.08998 * 109.64337 * 289.75000 * 22 21 20 40 40 H 1.09002 * 109.81894 * 169.22695 * 22 21 20 41 41 H 1.09000 * 109.64022 * 289.32867 * 23 17 16 42 42 H 1.08997 * 109.64205 * 49.74263 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3428 0.4573 6 7 0.3842 2.2690 1.0938 7 14 2.3367 4.0047 0.1691 8 1 1.8679 4.5633 -1.1245 9 1 1.9682 4.9301 1.2704 10 1 3.8122 3.8418 0.1322 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5219 -3.5639 2.6081 15 8 3.2191 -3.0389 3.6587 16 6 4.2754 -4.8691 2.6075 17 6 4.5303 -5.3113 4.0498 18 1 3.5825 -5.3601 4.5857 19 6 5.4290 -4.3162 4.7238 20 6 6.4181 -4.6376 5.4945 21 6 6.8107 -6.0504 5.8136 22 6 5.6657 -7.0058 5.4708 23 6 5.1839 -6.6950 4.0481 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8499 -0.5776 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0463 3.0774 1.4130 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5147 30 1 1.5002 -1.8416 1.9555 31 1 3.0417 -0.9516 1.9558 32 1 3.4270 -3.3997 0.6009 33 1 3.6861 -5.6285 2.0937 34 1 5.2276 -4.7386 2.0934 35 1 5.2388 -3.2665 4.5550 36 1 6.9971 -3.8392 5.9349 37 1 7.0419 -6.1298 6.8758 38 1 7.6927 -6.3203 5.2328 39 1 4.8459 -6.8627 6.1747 40 1 6.0166 -8.0365 5.5218 41 1 4.4558 -7.4437 3.7360 42 1 6.0308 -6.6993 3.3619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267203078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:59 Heat of formation + Delta-G solvation = -39.588586 kcal Electronic energy + Delta-G solvation = -19988.288719 eV Core-core repulsion = 16967.587012 eV Total energy + Delta-G solvation = -3020.701707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98584 -39.15493 -37.82062 -35.67104 -33.69620 -33.19010 -31.85605 -30.13921 -28.06250 -27.78602 -25.03175 -23.27660 -22.93688 -22.36967 -21.16469 -18.84177 -18.81151 -17.94016 -17.08655 -16.89868 -16.60824 -16.55173 -15.62645 -15.27136 -15.03512 -14.99739 -14.61199 -14.18635 -14.02432 -13.72502 -13.50847 -13.20691 -13.09533 -12.97629 -12.81731 -12.64979 -12.49148 -12.33527 -12.09961 -12.03161 -11.77355 -11.69646 -11.40177 -11.04289 -10.69829 -10.64897 -10.02376 -9.86919 -8.88358 -7.86881 -5.36724 1.41579 1.45041 1.46080 1.55032 1.73863 2.26478 2.51689 3.28509 3.67215 3.80496 3.82749 3.96481 4.05723 4.22494 4.31812 4.32694 4.44740 4.53802 4.55206 4.65333 4.73185 4.82795 4.83219 4.86464 4.93086 5.05970 5.09560 5.12573 5.17504 5.25416 5.30549 5.44799 5.50565 5.54023 5.61485 5.70311 5.81990 6.10299 6.29085 6.68677 7.10777 7.39492 7.81754 8.23990 9.16854 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032008 B = 0.003335 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.572116 B = 8393.300495 C = 8878.717281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.714 5.714 14 C 0.497 3.503 15 O -0.593 6.593 16 C -0.121 4.121 17 C -0.043 4.043 18 H 0.063 0.937 19 C -0.156 4.156 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.109 4.109 24 H -0.003 1.003 25 H 0.022 0.978 26 H 0.037 0.963 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.417 0.583 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -21.790 1.830 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.397 4.397 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.286 3.714 15 O -0.473 6.473 16 C -0.160 4.160 17 C -0.061 4.061 18 H 0.081 0.919 19 C -0.175 4.175 20 C -0.184 4.184 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.146 4.146 24 H 0.015 0.985 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.254 0.746 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.456 -21.269 2.592 24.297 hybrid contribution -0.091 1.745 0.125 1.752 sum 11.366 -19.524 2.718 22.754 Atomic orbital electron populations 1.20601 0.82457 0.96527 0.97431 1.44189 1.02388 1.01672 1.85667 1.19610 0.98388 0.86450 1.35275 0.90605 1.25884 0.98465 1.02232 0.98513 1.70247 1.19331 1.27565 1.41513 0.85195 0.78433 0.79510 0.76891 1.20755 1.22460 1.19238 1.21139 0.97093 0.87531 0.92222 1.21846 0.94057 0.84189 1.01038 1.45973 1.57703 1.23621 1.09376 1.21650 0.78971 0.87789 0.83029 1.90695 1.56560 1.66914 1.33174 1.21760 1.02045 0.93111 0.99087 1.19837 0.97853 0.94622 0.93833 0.91873 1.22155 0.96854 0.99048 0.99403 1.22250 0.98129 0.98855 0.99153 1.20485 0.99033 0.90993 1.01969 1.21623 0.97869 0.99744 0.96659 1.21658 1.01094 0.94129 0.97707 0.98455 0.95911 0.94499 0.94280 0.91745 0.90604 0.95219 0.95764 0.74571 0.85344 0.86603 0.90851 0.88668 0.90579 0.89575 0.92945 0.89474 0.89806 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.77 9.01 127.77 1.15 9.92 16 2 N -0.62 -31.04 2.93 -726.94 -2.13 -33.16 16 3 C -0.27 -14.81 9.67 84.03 0.81 -14.00 16 4 H 0.08 4.03 7.84 -2.91 -0.02 4.00 16 5 C -0.06 -3.21 5.13 84.86 0.44 -2.77 16 6 N -0.94 -57.31 10.58 21.65 0.23 -57.08 16 7 Si 0.97 45.97 29.57 68.60 2.03 48.00 16 8 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.15 5.62 5.82 86.37 0.50 6.12 16 12 C 0.12 4.62 6.00 86.38 0.52 5.14 16 13 N -0.71 -20.44 5.56 -463.07 -2.57 -23.02 16 14 C 0.50 15.08 7.46 87.66 0.65 15.73 16 15 O -0.59 -24.68 14.24 -3.05 -0.04 -24.73 16 16 C -0.12 -2.23 5.14 29.85 0.15 -2.08 16 17 C -0.04 -0.90 2.12 -11.73 -0.02 -0.93 16 18 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 19 C -0.16 -4.08 8.41 27.03 0.23 -3.86 16 20 C -0.17 -3.62 9.80 27.03 0.27 -3.36 16 21 C -0.09 -1.33 6.12 29.65 0.18 -1.15 16 22 C -0.12 -1.66 6.01 30.73 0.18 -1.48 16 23 C -0.11 -1.47 5.30 30.73 0.16 -1.31 16 24 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 25 H 0.02 1.21 7.19 -2.39 -0.02 1.20 16 26 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 29 H 0.08 2.41 7.86 -2.39 -0.02 2.39 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.42 8.11 8.47 -92.70 -0.79 7.32 16 33 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.47 6.47 -2.91 -0.02 2.46 16 36 H 0.10 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -74.52 337.01 2.93 -71.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.19 Total: 12.42 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.22 Total: 5.99 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.47 Total: -113.26 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.52 2.93 -71.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267203078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.996 kcal (2) G-P(sol) polarization free energy of solvation -74.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds