Wall clock time and date at job start Mon Mar 30 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00186 * 2 1 4 4 O 1.21278 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00034 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.55153 * 34.30339 * 5 3 2 7 7 C 1.53049 * 117.52692 * 248.57054 * 5 3 2 8 8 C 1.52724 * 117.50729 * 180.02562 * 5 3 2 9 9 C 1.53222 * 117.82842 * 215.25091 * 8 5 3 10 10 C 1.53259 * 108.75857 * 197.05219 * 9 8 5 11 11 N 1.46812 * 109.45364 * 304.31466 * 10 9 8 12 12 C 1.46896 * 111.00010 * 189.20183 * 11 10 9 13 13 C 1.53005 * 109.47022 * 170.00340 * 12 11 10 14 14 C 1.50697 * 109.47028 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00053 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99568 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00417 * 18 16 14 20 20 H 1.48506 * 109.47205 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47633 * 299.99848 * 18 16 14 22 22 C 1.46814 * 111.55580 * 64.83934 * 11 10 9 23 23 C 1.53254 * 109.45134 * 295.16353 * 22 11 10 24 24 H 1.08996 * 109.47316 * 59.99575 * 1 2 3 25 25 H 1.08993 * 109.47544 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46772 * 300.00105 * 1 2 3 27 27 H 0.97002 * 119.99503 * 180.02562 * 2 1 3 28 28 H 1.09005 * 117.50346 * 145.06866 * 7 5 3 29 29 H 1.08997 * 117.51086 * 0.02562 * 7 5 3 30 30 H 1.09002 * 109.61601 * 77.22248 * 9 8 5 31 31 H 1.09004 * 109.61060 * 316.87607 * 9 8 5 32 32 H 1.08997 * 109.47585 * 64.31059 * 10 9 8 33 33 H 1.09007 * 109.47212 * 184.31997 * 10 9 8 34 34 H 1.09002 * 109.47007 * 289.99492 * 12 11 10 35 35 H 1.09001 * 109.47515 * 50.00180 * 12 11 10 36 36 H 1.09002 * 109.46537 * 299.99440 * 13 12 11 37 37 H 1.08990 * 109.47554 * 59.99517 * 13 12 11 38 38 H 0.97002 * 119.99271 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46909 * 55.15570 * 22 11 10 40 40 H 1.08994 * 109.47685 * 175.16032 * 22 11 10 41 41 H 1.08995 * 109.61160 * 175.33915 * 23 22 11 42 42 H 1.09005 * 109.60764 * 295.68025 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.1158 0.3549 -0.5552 7 6 4.3538 1.6627 1.2627 8 6 4.3513 2.5217 0.0001 9 6 5.6629 2.6455 -0.7824 10 6 6.4004 3.9039 -0.3121 11 7 5.5216 5.0704 -0.4615 12 6 6.2598 6.3189 -0.2291 13 6 5.3879 7.5096 -0.6332 14 6 6.1455 8.7904 -0.3953 15 1 7.1482 8.7585 0.0044 16 6 5.5584 10.0032 -0.6881 17 7 4.3374 10.0420 -1.1754 18 14 6.4971 11.5908 -0.3926 19 1 7.7406 11.5891 -1.2044 20 1 5.6510 12.7465 -0.7849 21 1 6.8457 11.6994 1.0468 22 6 4.3505 4.9797 0.4192 23 6 3.4838 3.7891 -0.0050 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 5.2894 1.1765 1.5390 29 1 3.7295 1.9885 2.0946 30 1 5.4472 2.7245 -1.8480 31 1 6.2827 1.7679 -0.5987 32 1 6.6798 3.7913 0.7354 33 1 7.2979 4.0455 -0.9144 34 1 6.5159 6.3983 0.8274 35 1 7.1723 6.3179 -0.8252 36 1 5.1318 7.4303 -1.6897 37 1 4.4754 7.5107 -0.0372 38 1 3.9243 10.8952 -1.3810 39 1 4.6801 4.8407 1.4488 40 1 3.7680 5.8980 0.3450 41 1 2.6583 3.6691 0.6966 42 1 3.0903 3.9616 -1.0068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:15 Heat of formation + Delta-G solvation = -15.661837 kcal Electronic energy + Delta-G solvation = -20462.645676 eV Core-core repulsion = 17442.981511 eV Total energy + Delta-G solvation = -3019.664166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47710 -38.47665 -36.12409 -34.71073 -33.09110 -30.95839 -30.48050 -28.30577 -27.25492 -24.23041 -23.53855 -22.99236 -21.94060 -20.37166 -19.91444 -18.48368 -17.23096 -16.44793 -16.01259 -15.45563 -14.92062 -14.62332 -14.56520 -14.46336 -13.89916 -13.48787 -13.33453 -12.92245 -12.83617 -12.53883 -12.42642 -12.10439 -12.02968 -11.57897 -11.45542 -10.96567 -10.86800 -10.82462 -10.51574 -10.36054 -9.94373 -9.80755 -9.72652 -9.39089 -9.31018 -9.17603 -9.03404 -8.25245 -7.54868 -5.92200 -3.94539 2.41781 2.99739 3.37906 3.42096 3.44414 3.75384 4.45804 4.50541 4.61926 4.65135 4.80024 4.90171 5.04454 5.11830 5.26347 5.42684 5.44805 5.54079 5.56214 5.61356 5.74711 5.83388 5.92022 5.93218 6.13433 6.17657 6.18935 6.26331 6.34537 6.55112 6.60476 6.70629 6.84754 7.07773 7.28455 7.64264 7.73652 7.90889 8.01511 8.14050 8.18756 8.51816 9.12833 9.68422 11.19100 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.003645 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.218592 B = 7679.497580 C = 8307.513523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.540 3.460 4 O -0.523 6.523 5 C -0.194 4.194 6 H 0.120 0.880 7 C -0.149 4.149 8 C -0.073 4.073 9 C -0.078 4.078 10 C 0.060 3.940 11 N -0.540 5.540 12 C 0.064 3.936 13 C 0.028 3.972 14 C -0.522 4.522 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.055 3.945 23 C -0.072 4.072 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.400 0.600 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.017 0.983 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.022 0.978 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 -23.939 3.421 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.390 5.390 3 C 0.327 3.673 4 O -0.399 6.399 5 C -0.215 4.215 6 H 0.138 0.862 7 C -0.186 4.186 8 C -0.074 4.074 9 C -0.116 4.116 10 C -0.068 4.068 11 N -0.265 5.265 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.561 4.561 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.073 4.073 23 C -0.110 4.110 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.233 0.767 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.401 -23.031 2.879 23.458 hybrid contribution 0.955 0.274 0.942 1.369 sum -2.447 -22.757 3.821 23.205 Atomic orbital electron populations 1.21515 0.79728 1.01948 1.02447 1.45800 1.07589 1.08730 1.76886 1.19829 0.88683 0.83428 0.75347 1.90727 1.70096 1.30710 1.48349 1.22279 0.91415 1.01924 1.05907 0.86245 1.23062 1.01344 1.03025 0.91174 1.21664 0.97044 0.90521 0.98193 1.21258 0.93014 0.97221 1.00114 1.21991 0.95549 0.90704 0.98589 1.61848 1.08280 1.02085 1.54239 1.22299 0.97292 0.89054 0.97610 1.19103 0.94560 0.89806 0.97502 1.21172 1.00835 0.91259 1.42826 0.92919 1.24998 0.94946 0.99084 0.95318 1.69974 1.13434 1.25675 1.44085 0.86668 0.79795 0.83004 0.78551 1.20274 1.21309 1.20354 1.22205 0.92633 0.99351 0.93069 1.21461 0.95916 0.90094 1.03502 0.92178 0.90886 0.92286 0.76679 0.88046 0.88455 0.90528 0.91995 0.95636 0.91073 0.96462 0.92264 0.95730 0.96409 0.92986 0.95993 0.89445 0.89709 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.74 -6.14 5.71 -67.08 -0.38 -6.52 16 3 C 0.54 6.50 7.60 -10.99 -0.08 6.42 16 4 O -0.52 -8.49 13.16 5.56 0.07 -8.41 16 5 C -0.19 -2.03 5.92 -91.89 -0.54 -2.58 16 6 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.15 -1.57 9.63 -26.85 -0.26 -1.83 16 8 C -0.07 -0.96 2.03 -154.38 -0.31 -1.28 16 9 C -0.08 -0.99 5.85 -26.48 -0.16 -1.15 16 10 C 0.06 0.92 5.49 -3.74 -0.02 0.90 16 11 N -0.54 -10.40 4.59 -234.45 -1.08 -11.47 16 12 C 0.06 1.42 4.90 -3.82 -0.02 1.40 16 13 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 14 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.60 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.06 1.03 5.35 -3.74 -0.02 1.01 16 23 C -0.07 -1.20 4.34 -26.29 -0.11 -1.31 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.40 2.04 8.83 -40.82 -0.36 1.68 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 34 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 35 H 0.06 1.28 7.94 -51.93 -0.41 0.87 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.51 6.35 -51.93 -0.33 0.18 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.09 1.86 6.07 -51.93 -0.32 1.55 16 41 H 0.08 1.46 6.04 -51.93 -0.31 1.14 16 42 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -33.65 333.84 -9.25 -42.90 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.17 Total: -1.34 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.43 Total: -10.45 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.72 Total: -44.86 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.65 -9.25 -42.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.234 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds