Wall clock time and date at job start Mon Mar 30 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00186 * 2 1 4 4 O 1.21278 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00034 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.55153 * 34.30339 * 5 3 2 7 7 C 1.53049 * 117.52692 * 248.57054 * 5 3 2 8 8 C 1.52724 * 117.50729 * 180.02562 * 5 3 2 9 9 C 1.53222 * 117.82842 * 215.25091 * 8 5 3 10 10 C 1.53259 * 108.75857 * 197.05219 * 9 8 5 11 11 N 1.46812 * 109.45364 * 304.31466 * 10 9 8 12 12 C 1.46896 * 111.00010 * 189.20183 * 11 10 9 13 13 C 1.53005 * 109.47022 * 170.00340 * 12 11 10 14 14 C 1.50697 * 109.47028 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00053 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99568 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00027 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47389 * 60.00417 * 18 16 14 20 20 H 1.48506 * 109.47205 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47633 * 299.99848 * 18 16 14 22 22 C 1.46814 * 111.55580 * 64.83934 * 11 10 9 23 23 C 1.53254 * 109.45134 * 295.16353 * 22 11 10 24 24 H 1.08996 * 109.47316 * 59.99575 * 1 2 3 25 25 H 1.08993 * 109.47544 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46772 * 300.00105 * 1 2 3 27 27 H 0.97002 * 119.99503 * 180.02562 * 2 1 3 28 28 H 1.09005 * 117.50346 * 145.06866 * 7 5 3 29 29 H 1.08997 * 117.51086 * 0.02562 * 7 5 3 30 30 H 1.09002 * 109.61601 * 77.22248 * 9 8 5 31 31 H 1.09004 * 109.61060 * 316.87607 * 9 8 5 32 32 H 1.08997 * 109.47585 * 64.31059 * 10 9 8 33 33 H 1.09007 * 109.47212 * 184.31997 * 10 9 8 34 34 H 1.09002 * 109.47007 * 289.99492 * 12 11 10 35 35 H 1.09001 * 109.47515 * 50.00180 * 12 11 10 36 36 H 1.09002 * 109.46537 * 299.99440 * 13 12 11 37 37 H 1.08990 * 109.47554 * 59.99517 * 13 12 11 38 38 H 0.97002 * 119.99271 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.46909 * 55.15570 * 22 11 10 40 40 H 1.08994 * 109.47685 * 175.16032 * 22 11 10 41 41 H 1.08995 * 109.61160 * 175.33915 * 23 22 11 42 42 H 1.09005 * 109.60764 * 295.68025 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.1158 0.3549 -0.5552 7 6 4.3538 1.6627 1.2627 8 6 4.3513 2.5217 0.0001 9 6 5.6629 2.6455 -0.7824 10 6 6.4004 3.9039 -0.3121 11 7 5.5216 5.0704 -0.4615 12 6 6.2598 6.3189 -0.2291 13 6 5.3879 7.5096 -0.6332 14 6 6.1455 8.7904 -0.3953 15 1 7.1482 8.7585 0.0044 16 6 5.5584 10.0032 -0.6881 17 7 4.3374 10.0420 -1.1754 18 14 6.4971 11.5908 -0.3926 19 1 7.7406 11.5891 -1.2044 20 1 5.6510 12.7465 -0.7849 21 1 6.8457 11.6994 1.0468 22 6 4.3505 4.9797 0.4192 23 6 3.4838 3.7891 -0.0050 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 5.2894 1.1765 1.5390 29 1 3.7295 1.9885 2.0946 30 1 5.4472 2.7245 -1.8480 31 1 6.2827 1.7679 -0.5987 32 1 6.6798 3.7913 0.7354 33 1 7.2979 4.0455 -0.9144 34 1 6.5159 6.3983 0.8274 35 1 7.1723 6.3179 -0.8252 36 1 5.1318 7.4303 -1.6897 37 1 4.4754 7.5107 -0.0372 38 1 3.9243 10.8952 -1.3810 39 1 4.6801 4.8407 1.4488 40 1 3.7680 5.8980 0.3450 41 1 2.6583 3.6691 0.6966 42 1 3.0903 3.9616 -1.0068 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:14 Heat of formation + Delta-G solvation = -39.915910 kcal Electronic energy + Delta-G solvation = -20463.697412 eV Core-core repulsion = 17442.981511 eV Total energy + Delta-G solvation = -3020.715901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46657 -39.66959 -37.41448 -35.57910 -35.19548 -32.61056 -31.85141 -29.86536 -28.16828 -26.17244 -24.49539 -24.20598 -23.38802 -21.77410 -21.18752 -19.62173 -18.57438 -18.13535 -17.03669 -16.56423 -16.41734 -16.17252 -15.98590 -15.54757 -15.29961 -14.91371 -14.60201 -14.20740 -14.00577 -13.82772 -13.71568 -13.37197 -13.10390 -13.04363 -12.92829 -12.75368 -12.44006 -12.40517 -12.09341 -11.84004 -11.65524 -11.28612 -11.24576 -10.87690 -10.75314 -10.52547 -10.43953 -10.09734 -9.09039 -8.19647 -6.32073 1.39005 1.43401 1.50530 1.51284 2.25926 2.40260 2.83759 3.12967 3.15447 3.62787 3.71428 3.89337 3.98236 4.11898 4.29978 4.33336 4.44653 4.48320 4.56644 4.61089 4.64427 4.69616 4.74288 4.86421 4.92522 4.94291 4.97120 5.06713 5.09204 5.15341 5.23406 5.36500 5.39706 5.46731 5.55672 5.67555 5.79641 6.12590 6.36263 6.42972 6.59855 6.85559 7.33116 7.37031 8.92572 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.003645 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.218592 B = 7679.497580 C = 8307.513523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.720 5.720 3 C 0.528 3.472 4 O -0.578 6.578 5 C -0.174 4.174 6 H 0.159 0.841 7 C -0.129 4.129 8 C -0.104 4.104 9 C -0.067 4.067 10 C 0.056 3.944 11 N -0.554 5.554 12 C 0.081 3.919 13 C 0.036 3.964 14 C -0.546 4.546 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.061 3.939 23 C -0.058 4.058 24 H 0.044 0.956 25 H 0.113 0.887 26 H 0.045 0.955 27 H 0.420 0.580 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.067 0.933 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.029 0.971 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -26.585 4.156 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.316 3.684 4 O -0.458 6.458 5 C -0.194 4.194 6 H 0.177 0.823 7 C -0.166 4.166 8 C -0.105 4.105 9 C -0.105 4.105 10 C -0.072 4.072 11 N -0.279 5.279 12 C -0.047 4.047 13 C -0.002 4.002 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.067 4.067 23 C -0.096 4.096 24 H 0.063 0.937 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.257 0.743 28 H 0.154 0.846 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.247 -25.758 3.618 26.040 hybrid contribution 0.178 1.035 0.706 1.266 sum -1.069 -24.722 4.325 25.121 Atomic orbital electron populations 1.21635 0.79170 1.04138 1.01062 1.45691 1.08070 1.08598 1.74861 1.20285 0.89686 0.83586 0.74846 1.90720 1.71211 1.32824 1.51019 1.22380 0.90276 1.00812 1.05974 0.82301 1.23151 1.02393 1.01097 0.89979 1.21495 0.97391 0.90015 1.01602 1.21216 0.92858 0.97269 0.99140 1.22169 0.95418 0.89928 0.99636 1.61766 1.08922 1.02595 1.54643 1.21941 0.96467 0.88798 0.97460 1.18932 0.94376 0.92216 0.94661 1.21617 1.01444 0.92303 1.43035 0.91917 1.26049 0.95888 1.03386 0.94677 1.70138 1.15380 1.26855 1.45013 0.85425 0.78461 0.77609 0.79069 1.18854 1.20845 1.19074 1.22070 0.92533 0.98542 0.93516 1.21175 0.95798 0.91604 1.01009 0.93749 0.86841 0.93605 0.74342 0.84649 0.89630 0.91674 0.87580 0.94551 0.90141 0.96391 0.91416 0.99347 0.99308 0.92788 0.95319 0.93780 0.90850 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.70 127.77 1.37 2.50 16 2 N -0.72 -10.36 5.71 -484.53 -2.77 -13.13 16 3 C 0.53 12.13 7.60 87.66 0.67 12.79 16 4 O -0.58 -19.48 13.16 -3.02 -0.04 -19.52 16 5 C -0.17 -3.10 5.92 -11.61 -0.07 -3.17 16 6 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 7 C -0.13 -2.29 9.63 30.51 0.29 -2.00 16 8 C -0.10 -2.57 2.03 -52.10 -0.11 -2.67 16 9 C -0.07 -1.51 5.85 30.76 0.18 -1.33 16 10 C 0.06 1.61 5.49 86.41 0.47 2.08 16 11 N -0.55 -21.92 4.59 -895.65 -4.11 -26.03 16 12 C 0.08 3.67 4.90 86.31 0.42 4.10 16 13 C 0.04 2.04 4.90 29.85 0.15 2.19 16 14 C -0.55 -32.68 9.11 25.60 0.23 -32.45 16 15 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -59.91 13.29 21.45 0.28 -59.62 16 18 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.06 2.45 5.35 86.40 0.46 2.91 16 23 C -0.06 -2.04 4.34 30.88 0.13 -1.91 16 24 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.42 2.70 8.83 -92.71 -0.82 1.88 16 28 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 32 H 0.04 0.98 8.12 -2.39 -0.02 0.97 16 33 H 0.08 2.16 7.95 -2.38 -0.02 2.14 16 34 H 0.02 0.80 8.13 -2.39 -0.02 0.79 16 35 H 0.07 2.94 7.94 -2.39 -0.02 2.92 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H -0.01 -0.71 6.35 -2.39 -0.02 -0.72 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 40 H 0.04 2.09 6.07 -2.39 -0.01 2.07 16 41 H 0.07 2.72 6.04 -2.39 -0.01 2.71 16 42 H 0.04 1.66 8.12 -2.38 -0.02 1.64 16 Total: -1.00 -78.79 333.84 0.24 -78.55 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.17 Total: 8.50 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.67 Total: -16.63 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -6.59 Total: -98.78 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.79 0.24 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.638 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds