Wall clock time and date at job start Mon Mar 30 2020 00:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99806 * 2 1 4 4 O 1.21282 * 119.99788 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99904 * 359.97438 * 3 2 1 6 6 C 1.53786 * 113.61132 * 180.02562 * 5 3 2 7 7 C 1.53781 * 87.17350 * 220.06314 * 6 5 3 8 8 C 1.53782 * 87.08260 * 25.39213 * 7 6 5 9 9 C 1.46501 * 120.00056 * 179.97438 * 2 1 3 10 10 H 1.08993 * 109.46875 * 180.02562 * 9 2 1 11 11 C 1.53004 * 109.46851 * 60.00461 * 9 2 1 12 12 N 1.46500 * 109.46992 * 54.99820 * 11 9 2 13 13 C 1.36943 * 119.99761 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99779 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99608 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00433 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99532 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47285 * 60.00304 * 17 15 13 19 19 H 1.48502 * 109.46877 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47284 * 299.99899 * 17 15 13 21 21 C 1.53002 * 109.47482 * 300.00515 * 9 2 1 22 22 C 1.52998 * 117.49905 * 248.74734 * 21 9 2 23 23 C 1.52992 * 117.49936 * 180.08420 * 21 9 2 24 24 H 1.08999 * 109.46814 * 90.00671 * 1 2 3 25 25 H 1.08998 * 109.47398 * 210.00036 * 1 2 3 26 26 H 1.08997 * 109.47401 * 330.00589 * 1 2 3 27 27 H 1.08993 * 112.91004 * 311.25189 * 5 3 2 28 28 H 1.09002 * 113.61357 * 105.47231 * 6 5 3 29 29 H 1.09002 * 113.61608 * 334.65393 * 6 5 3 30 30 H 1.09001 * 113.61695 * 139.93969 * 7 6 5 31 31 H 1.08997 * 113.61223 * 270.84552 * 7 6 5 32 32 H 1.08997 * 113.61668 * 89.11298 * 8 7 6 33 33 H 1.08998 * 113.61674 * 219.93807 * 8 7 6 34 34 H 1.08998 * 109.47146 * 175.00264 * 11 9 2 35 35 H 1.09004 * 109.47169 * 294.99943 * 11 9 2 36 36 H 0.97000 * 120.00291 * 359.97438 * 12 11 9 37 37 H 0.97003 * 120.00438 * 179.97438 * 16 15 13 38 38 H 1.08999 * 115.54595 * 34.41519 * 21 9 2 39 39 H 1.08999 * 117.49805 * 359.97438 * 22 21 9 40 40 H 1.09003 * 117.49630 * 145.01671 * 22 21 9 41 41 H 1.09004 * 117.49995 * 214.97563 * 23 21 9 42 42 H 1.08992 * 117.50034 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.2976 3.7103 -0.0011 7 6 1.3063 4.3470 0.9872 8 6 0.9180 2.9167 1.3975 9 6 2.1975 -1.2687 0.0006 10 1 3.2691 -1.0695 0.0009 11 6 1.8280 -2.0715 -1.2484 12 7 2.0708 -1.2572 -2.4418 13 6 1.8114 -1.7699 -3.6849 14 1 1.4275 -2.7744 -3.7854 15 6 2.0410 -0.9981 -4.8156 16 7 2.5075 0.2265 -4.6931 17 14 1.6865 -1.6972 -6.5112 18 1 0.2489 -2.0565 -6.6080 19 1 2.0139 -0.6814 -7.5438 20 1 2.5156 -2.9097 -6.7300 21 6 1.8279 -2.0706 1.2501 22 6 2.9087 -2.2536 2.3174 23 6 2.4944 -3.4350 1.4366 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 0.6001 2.5085 -0.7557 28 1 2.3421 4.2194 -0.9639 29 1 3.2832 3.5266 0.4265 30 1 1.7875 4.9144 1.7838 31 1 0.4991 4.8966 0.5028 32 1 1.5261 2.5147 2.2078 33 1 -0.1509 2.7855 1.5652 34 1 2.4377 -2.9739 -1.2939 35 1 0.7742 -2.3469 -1.2047 36 1 2.4153 -0.3550 -2.3515 37 1 2.6683 0.7656 -5.4832 38 1 0.7979 -1.9629 1.5901 39 1 3.8832 -1.8031 2.1292 40 1 2.5897 -2.2667 3.3596 41 1 1.9030 -4.2249 1.8999 42 1 3.1958 -3.7617 0.6691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331238900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:35 Heat of formation + Delta-G solvation = 23.395151 kcal Electronic energy + Delta-G solvation = -21308.939776 eV Core-core repulsion = 18290.969248 eV Total energy + Delta-G solvation = -3017.970528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18769 -38.23495 -36.69458 -35.04476 -33.91001 -31.17586 -28.53907 -26.69052 -25.92670 -25.50978 -24.01270 -22.42235 -21.52583 -20.69076 -19.31436 -18.54681 -17.13674 -17.00976 -16.30075 -15.35818 -14.86325 -14.80023 -14.63700 -13.84139 -13.75081 -13.16247 -12.97892 -12.75209 -12.48376 -12.44222 -12.17493 -11.88834 -11.73866 -11.42596 -11.41376 -11.06942 -10.98505 -10.79127 -10.65856 -10.42627 -10.30013 -10.25594 -10.13453 -9.76575 -9.60242 -9.15841 -8.81707 -8.12158 -6.85337 -5.69127 -2.98442 3.09888 3.38313 3.46409 3.50657 3.52026 3.98642 4.61008 4.64498 4.72144 4.78386 4.85304 4.93603 5.07308 5.12824 5.27933 5.44636 5.45508 5.61193 5.66384 5.74360 5.75134 5.76260 5.84341 5.86197 5.87495 5.99118 6.03467 6.13752 6.17544 6.25314 6.25347 6.30233 6.38083 6.51630 6.57909 6.80782 7.09480 7.73334 7.87118 8.48408 8.69583 9.59622 10.19019 10.54594 11.52895 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.007095 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.661879 B = 3945.229921 C = 5440.140971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.594 5.594 3 C 0.530 3.470 4 O -0.542 6.542 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.142 4.142 8 C -0.122 4.122 9 C 0.161 3.839 10 H 0.099 0.901 11 C 0.149 3.851 12 N -0.727 5.727 13 C -0.240 4.240 14 H 0.068 0.932 15 C -0.013 4.013 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.158 4.158 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 2.301 15.544 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.325 5.325 3 C 0.318 3.682 4 O -0.419 6.419 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.179 4.179 8 C -0.160 4.160 9 C 0.058 3.942 10 H 0.117 0.883 11 C 0.020 3.980 12 N -0.372 5.372 13 C -0.372 4.372 14 H 0.086 0.914 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.178 4.178 22 C -0.216 4.216 23 C -0.208 4.208 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.909 2.202 15.394 16.307 hybrid contribution -0.295 -0.235 -1.104 1.166 sum -5.204 1.967 14.290 15.335 Atomic orbital electron populations 1.21722 0.80117 1.01887 1.02513 1.47554 1.06654 1.05436 1.72896 1.20352 0.87779 0.84943 0.75148 1.90653 1.14040 1.87136 1.50036 1.22759 1.00274 0.92797 0.99611 1.22777 0.98397 0.94283 1.00086 1.22825 0.99623 0.95947 0.99500 1.22850 1.01091 0.96594 0.95482 1.20883 0.97871 0.82579 0.92890 0.88308 1.20916 0.97659 0.93438 0.85964 1.42295 1.78806 1.15802 1.00302 1.19164 1.36299 0.97959 0.83728 0.91377 1.24741 1.02149 0.96321 0.97699 1.69679 1.50995 1.08672 1.28405 0.86293 0.77842 0.77749 0.84422 1.21379 1.21734 1.21332 1.22558 0.97910 0.99366 0.97921 1.23005 0.99777 1.02960 0.95843 1.22922 1.03819 0.91156 1.02953 0.91797 0.91550 0.91617 0.86954 0.90948 0.88906 0.91335 0.90062 0.89985 0.91026 0.95532 0.96207 0.77952 0.93546 0.87762 0.88731 0.89250 0.88902 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 9.24 59.85 0.55 1.67 16 2 N -0.59 -10.17 2.24 -173.93 -0.39 -10.56 16 3 C 0.53 9.84 6.91 -10.99 -0.08 9.77 16 4 O -0.54 -12.10 15.23 5.56 0.08 -12.02 16 5 C -0.13 -1.96 2.79 -90.86 -0.25 -2.21 16 6 C -0.12 -1.66 7.40 -25.92 -0.19 -1.85 16 7 C -0.14 -1.50 8.08 -25.92 -0.21 -1.71 16 8 C -0.12 -1.37 6.92 -25.82 -0.18 -1.55 16 9 C 0.16 2.89 2.42 -67.93 -0.16 2.73 16 10 H 0.10 2.05 6.66 -51.93 -0.35 1.70 16 11 C 0.15 3.11 5.32 -4.04 -0.02 3.09 16 12 N -0.73 -19.21 5.43 -59.90 -0.33 -19.54 16 13 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 17 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C -0.16 -2.20 5.15 -90.62 -0.47 -2.66 16 22 C -0.18 -2.25 10.18 -26.69 -0.27 -2.52 16 23 C -0.17 -2.13 9.80 -26.70 -0.26 -2.39 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 26 H 0.07 0.73 5.80 -51.93 -0.30 0.43 16 27 H 0.11 1.63 7.85 -51.93 -0.41 1.22 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.44 7.43 -51.93 -0.39 1.05 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 34 H 0.03 0.56 7.47 -51.93 -0.39 0.18 16 35 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 36 H 0.39 11.10 7.06 -40.82 -0.29 10.81 16 37 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.10 1.31 6.59 -51.93 -0.34 0.97 16 39 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.32 7.66 -51.93 -0.40 0.92 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -33.41 336.16 -8.57 -41.98 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.92 Total: 10.71 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.79 Total: -5.18 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.01 Total: -58.41 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.41 -8.57 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331238900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.378 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds