Wall clock time and date at job start Mon Mar 30 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00347 * 2 1 4 4 O 1.21280 * 120.00521 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99738 * 0.02562 * 3 2 1 6 6 C 1.53781 * 113.61358 * 279.13390 * 5 3 2 7 7 C 1.53961 * 87.01878 * 220.04926 * 6 5 3 8 8 C 1.53776 * 87.11206 * 25.36434 * 7 6 5 9 9 C 1.46504 * 119.99856 * 180.02562 * 2 1 3 10 10 H 1.08997 * 109.47404 * 179.97438 * 9 2 1 11 11 C 1.53005 * 109.46775 * 299.99352 * 9 2 1 12 12 N 1.46498 * 109.47515 * 305.00444 * 11 9 2 13 13 C 1.36937 * 120.00087 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99947 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99819 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99690 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00240 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47030 * 90.00021 * 17 15 13 19 19 H 1.48499 * 109.47206 * 210.00095 * 17 15 13 20 20 H 1.48497 * 109.47373 * 330.00387 * 17 15 13 21 21 C 1.52996 * 109.47415 * 59.99472 * 9 2 1 22 22 C 1.53002 * 117.49888 * 111.25542 * 21 9 2 23 23 C 1.53000 * 117.50107 * 179.91304 * 21 9 2 24 24 H 1.09003 * 109.46638 * 269.99781 * 1 2 3 25 25 H 1.08999 * 109.46874 * 29.99444 * 1 2 3 26 26 H 1.08998 * 109.47149 * 149.99887 * 1 2 3 27 27 H 1.09001 * 112.85041 * 50.33129 * 5 3 2 28 28 H 1.08995 * 113.61474 * 334.56697 * 6 5 3 29 29 H 1.08997 * 113.61224 * 105.47121 * 6 5 3 30 30 H 1.09000 * 113.53399 * 270.80696 * 7 6 5 31 31 H 1.09000 * 113.66512 * 139.93506 * 7 6 5 32 32 H 1.08998 * 113.61585 * 220.08921 * 8 7 6 33 33 H 1.08998 * 113.69099 * 89.19817 * 8 7 6 34 34 H 1.09005 * 109.46886 * 65.00845 * 11 9 2 35 35 H 1.09001 * 109.46684 * 184.99898 * 11 9 2 36 36 H 0.96992 * 119.99560 * 359.97438 * 12 11 9 37 37 H 0.97004 * 119.99838 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.54951 * 325.58516 * 21 9 2 39 39 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 40 40 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 41 41 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 42 42 H 1.08999 * 117.49959 * 144.99502 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 0.8832 2.8942 -1.3903 7 6 1.2810 4.3319 -1.0093 8 6 2.2973 3.7100 -0.0371 9 6 2.1975 -1.2688 -0.0006 10 1 3.2691 -1.0697 -0.0009 11 6 1.8279 -2.0715 1.2485 12 7 2.0707 -1.2573 2.4419 13 6 1.8113 -1.7700 3.6849 14 1 1.4274 -2.7744 3.7854 15 6 2.0419 -0.9986 4.8157 16 7 1.7921 -1.4912 6.0104 17 14 2.7066 0.7384 4.6419 18 1 1.5745 1.6923 4.5258 19 1 3.5204 1.0789 5.8365 20 1 3.5534 0.8249 3.4251 21 6 1.8278 -2.0706 -1.2500 22 6 2.9087 -2.2537 -2.3174 23 6 2.4943 -3.4351 -1.4367 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 0.6188 2.5180 0.7741 28 1 1.4707 2.4814 -2.2104 29 1 -0.1897 2.7586 -1.5267 30 1 0.4848 4.8867 -0.5129 31 1 1.7416 4.8891 -1.8250 32 1 2.3644 4.2321 0.9174 33 1 3.2726 3.5204 -0.4852 34 1 0.7742 -2.3470 1.2047 35 1 2.4377 -2.9739 1.2939 36 1 2.4159 -0.3554 2.3516 37 1 1.9529 -0.9521 6.8007 38 1 0.7978 -1.9629 -1.5901 39 1 2.5898 -2.2663 -3.3596 40 1 3.8832 -1.8033 -2.1292 41 1 3.1966 -3.7614 -0.6694 42 1 1.9028 -4.2251 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331238901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:38 Heat of formation + Delta-G solvation = 26.644745 kcal Electronic energy + Delta-G solvation = -21456.923415 eV Core-core repulsion = 18439.093800 eV Total energy + Delta-G solvation = -3017.829615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40511 -38.38797 -36.87379 -35.23924 -34.09891 -31.39914 -28.98485 -26.87719 -26.18587 -25.69193 -24.02685 -22.40545 -21.36450 -20.84534 -19.54038 -18.76314 -17.55789 -17.24922 -16.48489 -15.55078 -15.08252 -14.94327 -14.53135 -14.10653 -13.85674 -13.44393 -13.01052 -12.67195 -12.66710 -12.62686 -12.35654 -12.08036 -11.91349 -11.73518 -11.53513 -11.24923 -11.19871 -10.89360 -10.73578 -10.59108 -10.46998 -10.36792 -10.12568 -9.83557 -9.55993 -9.36550 -8.86617 -8.32671 -7.19106 -5.74529 -3.08924 2.85878 3.18441 3.39679 3.48481 3.52862 3.89122 4.45741 4.53714 4.60279 4.63537 4.69686 4.74917 4.98073 5.02853 5.09972 5.29286 5.31390 5.50035 5.53990 5.56883 5.60879 5.67202 5.68997 5.71382 5.73273 5.80462 5.91800 5.93743 5.99513 6.01957 6.06843 6.17673 6.22979 6.34250 6.43556 6.66776 6.91248 7.65235 8.01914 8.43694 8.46490 9.24810 9.97857 10.18459 11.43779 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.008825 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.918170 B = 3171.870279 C = 4783.212661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.596 5.596 3 C 0.523 3.477 4 O -0.543 6.543 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.140 4.140 8 C -0.120 4.120 9 C 0.157 3.843 10 H 0.100 0.900 11 C 0.153 3.847 12 N -0.752 5.752 13 C -0.241 4.241 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.874 3.126 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.272 1.272 21 C -0.159 4.159 22 C -0.179 4.179 23 C -0.169 4.169 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.036 0.964 36 H 0.363 0.637 37 H 0.259 0.741 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 6.058 -18.987 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.328 5.328 3 C 0.311 3.689 4 O -0.420 6.420 5 C -0.160 4.160 6 C -0.159 4.159 7 C -0.178 4.178 8 C -0.158 4.158 9 C 0.054 3.946 10 H 0.118 0.882 11 C 0.025 3.975 12 N -0.398 5.398 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.582 5.582 17 Si 0.705 3.295 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.198 1.198 21 C -0.178 4.178 22 C -0.216 4.216 23 C -0.207 4.207 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.404 5.892 -18.793 19.987 hybrid contribution 0.270 1.100 0.179 1.147 sum -3.133 6.991 -18.615 20.130 Atomic orbital electron populations 1.21793 0.79747 1.02335 1.02717 1.47657 1.06948 1.05497 1.72665 1.20466 0.87871 0.85106 0.75454 1.90662 1.13990 1.87203 1.50126 1.22803 1.00254 0.92776 1.00183 1.22847 1.01165 0.96570 0.95293 1.22852 0.99363 0.95981 0.99594 1.22806 0.98416 0.94319 1.00258 1.20967 0.97871 0.82507 0.93286 0.88242 1.20900 0.98459 0.93304 0.84827 1.42655 1.79986 1.15011 1.02125 1.19044 1.36336 0.99939 0.81773 0.89209 1.24619 1.01395 0.97794 0.95113 1.69702 1.54786 1.36885 0.96871 0.86664 0.79225 0.86338 0.77317 1.21162 1.21621 1.19814 1.22520 0.98050 0.99508 0.97730 1.23010 0.99653 1.03009 0.95904 1.22942 1.03728 0.91114 1.02914 0.91659 0.91408 0.91105 0.86931 0.89804 0.90769 0.89951 0.91137 0.91073 0.88762 0.95234 0.94593 0.80413 0.93122 0.87598 0.89164 0.88765 0.88237 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 9.26 59.85 0.55 1.53 16 2 N -0.60 -9.50 2.24 -173.93 -0.39 -9.89 16 3 C 0.52 9.03 6.90 -10.99 -0.08 8.95 16 4 O -0.54 -11.35 15.24 5.56 0.08 -11.26 16 5 C -0.14 -1.87 2.80 -90.95 -0.25 -2.13 16 6 C -0.12 -1.22 6.85 -25.82 -0.18 -1.40 16 7 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 8 C -0.12 -1.54 7.40 -25.92 -0.19 -1.73 16 9 C 0.16 2.64 2.42 -67.93 -0.16 2.47 16 10 H 0.10 1.92 6.66 -51.93 -0.35 1.58 16 11 C 0.15 3.04 5.32 -4.04 -0.02 3.02 16 12 N -0.75 -18.74 5.24 -59.91 -0.31 -19.05 16 13 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.97 13.97 55.49 0.78 -29.20 16 17 Si 0.87 23.39 27.74 -169.99 -4.71 18.68 16 18 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 20 H -0.27 -7.32 6.52 56.52 0.37 -6.95 16 21 C -0.16 -2.06 5.15 -90.62 -0.47 -2.53 16 22 C -0.18 -2.11 10.18 -26.69 -0.27 -2.38 16 23 C -0.17 -2.00 9.80 -26.70 -0.26 -2.26 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 0.67 5.66 -51.93 -0.29 0.38 16 26 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 27 H 0.11 1.46 7.92 -51.93 -0.41 1.05 16 28 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.07 0.61 7.60 -51.93 -0.39 0.21 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.33 7.45 -51.93 -0.39 0.95 16 34 H 0.03 0.58 7.84 -51.93 -0.41 0.17 16 35 H 0.04 0.72 7.48 -51.93 -0.39 0.34 16 36 H 0.36 9.30 4.93 -40.82 -0.20 9.10 16 37 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 38 H 0.11 1.23 6.59 -51.93 -0.34 0.89 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.10 1.26 7.67 -51.92 -0.40 0.86 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -34.33 332.87 -8.20 -42.54 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.87 Total: 8.24 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.79 Total: -5.07 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.07 Total: -58.14 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.33 -8.20 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331238901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds