Wall clock time and date at job start Mon Mar 30 2020 00:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00347 * 2 1 4 4 O 1.21280 * 120.00521 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99738 * 0.02562 * 3 2 1 6 6 C 1.53781 * 113.61358 * 279.13390 * 5 3 2 7 7 C 1.53961 * 87.01878 * 220.04926 * 6 5 3 8 8 C 1.53776 * 87.11206 * 25.36434 * 7 6 5 9 9 C 1.46504 * 119.99856 * 180.02562 * 2 1 3 10 10 H 1.08997 * 109.47404 * 179.97438 * 9 2 1 11 11 C 1.53005 * 109.46775 * 299.99352 * 9 2 1 12 12 N 1.46498 * 109.47515 * 305.00444 * 11 9 2 13 13 C 1.36937 * 120.00087 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99947 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99819 * 179.97438 * 13 12 11 16 16 N 1.31625 * 119.99690 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00240 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47030 * 90.00021 * 17 15 13 19 19 H 1.48499 * 109.47206 * 210.00095 * 17 15 13 20 20 H 1.48497 * 109.47373 * 330.00387 * 17 15 13 21 21 C 1.52996 * 109.47415 * 59.99472 * 9 2 1 22 22 C 1.53002 * 117.49888 * 111.25542 * 21 9 2 23 23 C 1.53000 * 117.50107 * 179.91304 * 21 9 2 24 24 H 1.09003 * 109.46638 * 269.99781 * 1 2 3 25 25 H 1.08999 * 109.46874 * 29.99444 * 1 2 3 26 26 H 1.08998 * 109.47149 * 149.99887 * 1 2 3 27 27 H 1.09001 * 112.85041 * 50.33129 * 5 3 2 28 28 H 1.08995 * 113.61474 * 334.56697 * 6 5 3 29 29 H 1.08997 * 113.61224 * 105.47121 * 6 5 3 30 30 H 1.09000 * 113.53399 * 270.80696 * 7 6 5 31 31 H 1.09000 * 113.66512 * 139.93506 * 7 6 5 32 32 H 1.08998 * 113.61585 * 220.08921 * 8 7 6 33 33 H 1.08998 * 113.69099 * 89.19817 * 8 7 6 34 34 H 1.09005 * 109.46886 * 65.00845 * 11 9 2 35 35 H 1.09001 * 109.46684 * 184.99898 * 11 9 2 36 36 H 0.96992 * 119.99560 * 359.97438 * 12 11 9 37 37 H 0.97004 * 119.99838 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.54951 * 325.58516 * 21 9 2 39 39 H 1.09000 * 117.49996 * 215.00804 * 22 21 9 40 40 H 1.08999 * 117.49664 * 0.02562 * 22 21 9 41 41 H 1.09008 * 117.49673 * 359.97438 * 23 21 9 42 42 H 1.08999 * 117.49959 * 144.99502 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 0.8832 2.8942 -1.3903 7 6 1.2810 4.3319 -1.0093 8 6 2.2973 3.7100 -0.0371 9 6 2.1975 -1.2688 -0.0006 10 1 3.2691 -1.0697 -0.0009 11 6 1.8279 -2.0715 1.2485 12 7 2.0707 -1.2573 2.4419 13 6 1.8113 -1.7700 3.6849 14 1 1.4274 -2.7744 3.7854 15 6 2.0419 -0.9986 4.8157 16 7 1.7921 -1.4912 6.0104 17 14 2.7066 0.7384 4.6419 18 1 1.5745 1.6923 4.5258 19 1 3.5204 1.0789 5.8365 20 1 3.5534 0.8249 3.4251 21 6 1.8278 -2.0706 -1.2500 22 6 2.9087 -2.2537 -2.3174 23 6 2.4943 -3.4351 -1.4367 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 0.6188 2.5180 0.7741 28 1 1.4707 2.4814 -2.2104 29 1 -0.1897 2.7586 -1.5267 30 1 0.4848 4.8867 -0.5129 31 1 1.7416 4.8891 -1.8250 32 1 2.3644 4.2321 0.9174 33 1 3.2726 3.5204 -0.4852 34 1 0.7742 -2.3470 1.2047 35 1 2.4377 -2.9739 1.2939 36 1 2.4159 -0.3554 2.3516 37 1 1.9529 -0.9521 6.8007 38 1 0.7978 -1.9629 -1.5901 39 1 2.5898 -2.2663 -3.3596 40 1 3.8832 -1.8033 -2.1292 41 1 3.1966 -3.7614 -0.6694 42 1 1.9028 -4.2251 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331238901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:37 Heat of formation + Delta-G solvation = 4.936170 kcal Electronic energy + Delta-G solvation = -21457.864769 eV Core-core repulsion = 18439.093800 eV Total energy + Delta-G solvation = -3018.770969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60413 -39.48091 -38.00606 -36.72045 -35.81368 -33.51476 -30.55889 -27.96268 -27.45924 -26.57198 -25.67803 -23.67743 -22.86767 -21.88096 -20.80004 -19.92093 -19.57517 -18.44290 -17.68077 -16.75257 -16.63785 -16.08283 -15.97537 -15.84902 -15.12771 -14.83251 -14.79912 -14.26001 -13.75885 -13.68287 -13.61946 -13.51849 -13.12829 -13.02235 -12.94394 -12.77783 -12.40153 -12.25486 -12.23555 -12.08119 -11.90263 -11.45704 -11.36622 -11.30574 -11.09575 -10.94915 -10.60790 -9.61758 -9.35769 -8.10425 -5.41561 1.23906 1.29473 1.37166 1.58021 1.99706 2.37940 2.86436 3.21034 3.41524 3.49591 3.62838 3.68839 3.88100 3.90697 3.95801 4.04350 4.12773 4.23120 4.35583 4.38845 4.51107 4.63230 4.73577 4.76476 4.77138 4.83006 4.84492 4.94495 5.00475 5.03730 5.04157 5.07066 5.16510 5.23719 5.27390 5.47527 5.61238 5.70302 6.14382 6.42080 6.99705 7.17129 7.77141 7.95272 9.11091 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.008825 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.918170 B = 3171.870279 C = 4783.212661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.597 5.597 3 C 0.510 3.490 4 O -0.592 6.592 5 C -0.147 4.147 6 C -0.107 4.107 7 C -0.123 4.123 8 C -0.134 4.134 9 C 0.165 3.835 10 H 0.066 0.934 11 C 0.151 3.849 12 N -0.756 5.756 13 C -0.227 4.227 14 H 0.066 0.934 15 C -0.052 4.052 16 N -0.976 5.976 17 Si 0.938 3.062 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.165 4.165 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.359 0.641 37 H 0.259 0.741 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 7.143 -21.559 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C 0.300 3.700 4 O -0.473 6.473 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.160 4.160 8 C -0.172 4.172 9 C 0.061 3.939 10 H 0.085 0.915 11 C 0.024 3.976 12 N -0.401 5.401 13 C -0.358 4.358 14 H 0.084 0.916 15 C -0.244 4.244 16 N -0.627 5.627 17 Si 0.767 3.233 18 H -0.195 1.195 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.182 4.182 22 C -0.207 4.207 23 C -0.202 4.202 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.192 0.808 37 H 0.068 0.932 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.260 6.965 -21.410 23.121 hybrid contribution 0.863 0.650 0.966 1.449 sum -4.398 7.615 -20.444 22.255 Atomic orbital electron populations 1.22020 0.77503 1.05127 1.02266 1.47823 1.08345 1.04825 1.71765 1.21270 0.87638 0.86568 0.74479 1.90633 1.16225 1.87983 1.52427 1.22988 1.00363 0.90555 1.02881 1.22830 1.02702 0.96239 0.92676 1.22820 0.98438 0.95940 0.98835 1.22867 0.98382 0.94923 1.01043 1.20707 0.96327 0.83247 0.93630 0.91535 1.21095 0.98920 0.93106 0.84464 1.42719 1.79787 1.15304 1.02322 1.19066 1.34444 0.98808 0.83499 0.91571 1.25266 1.02731 1.01520 0.94926 1.69839 1.56825 1.38434 0.97605 0.85658 0.78758 0.82342 0.76541 1.19486 1.21674 1.20652 1.22440 0.99580 0.99830 0.96397 1.23035 0.98369 1.02384 0.96945 1.23025 1.03350 0.91350 1.02520 0.93654 0.88171 0.88900 0.86142 0.90308 0.87832 0.88051 0.89847 0.91585 0.90937 0.93949 0.94929 0.80805 0.93224 0.85187 0.86550 0.90574 0.89812 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 9.26 127.77 1.18 2.82 16 2 N -0.60 -18.34 2.24 -822.59 -1.85 -20.19 16 3 C 0.51 17.41 6.90 87.66 0.61 18.02 16 4 O -0.59 -25.47 15.24 -3.03 -0.05 -25.52 16 5 C -0.15 -3.70 2.80 -11.01 -0.03 -3.73 16 6 C -0.11 -1.79 6.85 31.18 0.21 -1.57 16 7 C -0.12 -1.96 8.09 31.18 0.25 -1.70 16 8 C -0.13 -3.31 7.40 31.12 0.23 -3.08 16 9 C 0.17 5.47 2.42 44.99 0.11 5.58 16 10 H 0.07 2.66 6.66 -2.39 -0.02 2.65 16 11 C 0.15 5.97 5.32 86.38 0.46 6.43 16 12 N -0.76 -38.00 5.24 -343.45 -1.80 -39.80 16 13 C -0.23 -13.44 10.47 84.03 0.88 -12.56 16 14 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 15 C -0.05 -3.21 5.50 84.86 0.47 -2.74 16 16 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 17 Si 0.94 49.35 27.74 68.60 1.90 51.25 16 18 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.29 -15.19 7.11 99.48 0.71 -14.49 16 20 H -0.28 -14.96 6.52 99.48 0.65 -14.31 16 21 C -0.16 -3.89 5.15 -10.79 -0.06 -3.95 16 22 C -0.17 -3.68 10.18 30.62 0.31 -3.37 16 23 C -0.17 -3.55 9.80 30.62 0.30 -3.25 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.10 1.60 5.66 -2.39 -0.01 1.58 16 26 H 0.09 1.68 6.43 -2.39 -0.02 1.66 16 27 H 0.12 2.83 7.92 -2.39 -0.02 2.81 16 28 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 29 H 0.10 1.16 7.60 -2.39 -0.02 1.14 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.09 7.45 -2.39 -0.02 2.08 16 34 H 0.04 1.60 7.84 -2.38 -0.02 1.58 16 35 H 0.03 1.32 7.48 -2.39 -0.02 1.31 16 36 H 0.36 18.57 4.93 -92.71 -0.46 18.11 16 37 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 38 H 0.13 2.50 6.59 -2.39 -0.02 2.49 16 39 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.94 8.05 -2.39 -0.02 1.92 16 41 H 0.08 2.07 7.67 -2.38 -0.02 2.05 16 42 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -76.82 332.87 3.93 -72.90 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.49 Total: 27.93 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.93 Total: -3.11 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -3.34 Total: -123.45 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.52 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.90 Total: 51.25 kcal Total: -76.82 3.93 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331238901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.835 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds