Wall clock time and date at job start Mon Mar 30 2020 00:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00168 * 2 1 4 4 C 1.53001 * 109.47484 * 179.97438 * 3 2 1 5 5 C 1.53000 * 115.54858 * 39.64934 * 4 3 2 6 6 C 1.52992 * 109.47260 * 65.21812 * 5 4 3 7 7 N 1.46897 * 109.47379 * 174.95867 * 6 5 4 8 8 C 1.46897 * 111.00187 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46837 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47196 * 304.99219 * 9 8 7 11 11 C 1.47194 * 109.47357 * 64.99993 * 9 8 7 12 12 N 6.69507 * 111.01506 * 233.04373 * 2 1 3 13 13 C 1.53001 * 109.46907 * 184.99747 * 9 8 7 14 14 C 1.50703 * 109.47528 * 174.99616 * 13 9 8 15 15 H 1.08002 * 119.99493 * 0.02562 * 14 13 9 16 16 C 1.37871 * 120.00614 * 180.02562 * 14 13 9 17 17 N 1.31517 * 119.99693 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00404 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46951 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47301 * 119.99620 * 18 16 14 21 21 H 1.48497 * 109.47216 * 240.00137 * 18 16 14 22 22 C 1.53003 * 117.49785 * 253.93676 * 4 3 2 23 23 C 1.53001 * 60.00211 * 252.51189 * 22 4 3 24 24 H 1.09000 * 109.47280 * 300.00404 * 1 2 3 25 25 H 1.09001 * 109.46948 * 60.00548 * 1 2 3 26 26 H 1.09007 * 109.46794 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47418 * 300.00078 * 3 2 1 28 28 H 1.09004 * 109.47143 * 59.99558 * 3 2 1 29 29 H 1.08998 * 109.47090 * 185.22242 * 5 4 3 30 30 H 1.09004 * 109.46652 * 305.22037 * 5 4 3 31 31 H 1.09000 * 109.47185 * 294.96114 * 6 5 4 32 32 H 1.09004 * 109.47313 * 54.96149 * 6 5 4 33 33 H 1.00904 * 110.99838 * 303.95679 * 7 6 5 34 34 H 1.09006 * 109.47043 * 299.99550 * 8 7 6 35 35 H 1.08998 * 109.47416 * 60.00254 * 8 7 6 36 36 H 1.08996 * 109.47700 * 295.00197 * 13 9 8 37 37 H 1.09004 * 109.46947 * 54.99998 * 13 9 8 38 38 H 0.96994 * 120.00052 * 180.02562 * 17 16 14 39 39 H 1.08996 * 117.50026 * 0.02562 * 22 4 3 40 40 H 1.08999 * 117.49232 * 145.02061 * 22 4 3 41 41 H 1.08996 * 117.49944 * 252.51849 * 23 22 4 42 42 H 1.09000 * 117.49852 * 107.48765 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1097 0.0729 -0.8797 6 6 3.8079 0.3780 -2.3482 7 7 4.4616 -0.6237 -3.2009 8 6 4.1937 -0.3616 -4.6213 9 6 4.8888 -1.4236 -5.4758 10 1 5.9507 -1.4487 -5.2313 11 6 4.2912 -2.7409 -5.2034 12 7 3.8299 -3.7574 -4.9941 13 6 4.7144 -1.0809 -6.9566 14 6 5.5009 -2.0562 -7.7941 15 1 6.0681 -2.8422 -7.3177 16 6 5.4965 -1.9452 -9.1683 17 7 4.8054 -0.9883 -9.7485 18 14 6.4708 -3.1545 -10.2063 19 1 7.1564 -4.1282 -9.3190 20 1 5.5494 -3.8787 -11.1183 21 1 7.4817 -2.4178 -11.0065 22 6 4.2688 1.5035 1.3051 23 6 4.3463 2.4761 0.1265 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 5.1885 0.0154 -0.7348 30 1 3.6550 -0.8790 -0.6055 31 1 2.7307 0.3471 -2.5118 32 1 4.1851 1.3697 -2.5983 33 1 5.4539 -0.6596 -3.0210 34 1 3.1192 -0.3975 -4.8009 35 1 4.5739 0.6248 -4.8868 36 1 3.6591 -1.1426 -7.2221 37 1 5.0768 -0.0694 -7.1406 38 1 4.8020 -0.9104 -10.7153 39 1 3.6647 1.7989 2.1629 40 1 5.1606 0.9210 1.5363 41 1 5.2890 2.5334 -0.4176 42 1 3.7931 3.4117 0.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336728153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:41 Heat of formation + Delta-G solvation = -14.918447 kcal Electronic energy + Delta-G solvation = -19626.593701 eV Core-core repulsion = 16606.961771 eV Total energy + Delta-G solvation = -3019.631930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27580 -37.36070 -36.87894 -35.12793 -33.53337 -31.88000 -29.58937 -28.17752 -26.21652 -25.64450 -23.26805 -22.69616 -22.02735 -21.59158 -19.24562 -17.03807 -16.58111 -16.38034 -16.16775 -16.01820 -15.06744 -14.84842 -14.56890 -14.24302 -14.04285 -13.49086 -13.20652 -12.87000 -12.70577 -12.39448 -12.14367 -11.89201 -11.81844 -11.75484 -11.55731 -11.28224 -11.17375 -11.05278 -10.90631 -10.65772 -10.51357 -10.39520 -10.19779 -10.10911 -9.69808 -9.48607 -9.17932 -8.44595 -8.20265 -6.08079 -4.10931 3.27918 3.29678 3.37877 3.42873 3.71180 3.80467 3.90043 4.22271 4.43003 4.55788 4.57881 4.76266 4.89644 4.98924 5.03075 5.12040 5.18724 5.26990 5.30180 5.36554 5.38585 5.49210 5.51333 5.60808 5.63445 5.66974 5.81524 5.85984 5.90545 6.07130 6.17689 6.33480 6.44651 6.54110 6.96552 7.20017 7.44780 7.54943 7.59472 7.87770 8.25419 8.64837 8.94289 9.54506 11.02941 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.003197 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.143329 B = 8757.384279 C = 9059.111686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.099 3.901 4 C -0.120 4.120 5 C -0.073 4.073 6 C 0.067 3.933 7 N -0.694 5.694 8 C 0.068 3.932 9 C 0.009 3.991 10 H 0.098 0.902 11 C 0.256 3.744 12 N -0.480 5.480 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.171 4.171 23 C -0.169 4.169 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 10.214 20.556 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.023 3.977 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.063 4.063 7 N -0.325 5.325 8 C -0.062 4.062 9 C -0.013 4.013 10 H 0.116 0.884 11 C -0.061 4.061 12 N -0.156 5.156 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.208 4.208 23 C -0.206 4.206 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.555 8.124 20.760 22.754 hybrid contribution 0.991 0.851 -0.954 1.618 sum -3.564 8.975 19.806 22.035 Atomic orbital electron populations 1.22741 0.81134 1.02939 0.99708 1.87938 1.19363 1.27229 1.95295 1.21942 0.90994 0.84963 0.99824 1.21370 0.92240 0.98237 1.00241 1.20957 0.99599 0.97614 0.92867 1.21836 0.99887 0.92539 0.92003 1.60480 1.16640 1.50288 1.05053 1.22047 1.01323 0.96761 0.86101 1.19213 0.98589 0.83648 0.99834 0.88368 1.28829 0.92548 0.94285 0.90448 1.80962 1.10431 1.12560 1.11682 1.19173 0.98458 0.97955 0.85181 1.21196 1.29788 1.13900 0.91395 0.92422 1.24959 0.95480 0.95539 0.98069 1.69950 1.41016 1.32054 1.10085 0.86533 0.79909 0.81258 0.80378 1.19648 1.20974 1.20888 1.23106 1.02759 1.03101 0.91827 1.23038 1.01878 0.93420 1.02290 0.94401 0.94023 0.89496 0.92862 0.93529 0.92146 0.89811 0.91110 0.95539 0.84365 0.90651 0.93431 0.95567 0.94482 0.92883 0.88909 0.88544 0.88232 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.29 9.73 -35.23 -0.34 -4.63 16 3 C 0.10 0.92 5.52 37.16 0.20 1.13 16 4 C -0.12 -1.11 1.95 -154.50 -0.30 -1.41 16 5 C -0.07 -0.79 5.03 -26.74 -0.13 -0.92 16 6 C 0.07 0.79 5.49 -3.83 -0.02 0.77 16 7 N -0.69 -9.54 6.20 -113.78 -0.71 -10.25 16 8 C 0.07 1.04 5.05 -3.82 -0.02 1.02 16 9 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 10 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 11 C 0.26 5.52 13.67 -20.77 -0.28 5.24 16 12 N -0.48 -11.27 18.54 42.14 0.78 -10.49 16 13 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 14 C -0.52 -14.13 8.60 -34.44 -0.30 -14.43 16 15 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.17 -1.35 9.87 -26.73 -0.26 -1.61 16 23 C -0.17 -1.29 9.97 -26.73 -0.27 -1.56 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 31 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 4.16 8.73 -39.29 -0.34 3.82 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -31.14 357.05 -7.31 -38.45 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.43 Total: -1.69 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.71 Total: -8.23 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.81 Total: -45.74 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.34 Total: -4.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.14 -7.31 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336728153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.528 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds