Wall clock time and date at job start Mon Mar 30 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00255 * 2 1 4 4 C 1.53001 * 109.47252 * 179.97438 * 3 2 1 5 5 C 1.52995 * 115.54692 * 39.65512 * 4 3 2 6 6 C 1.52996 * 109.47572 * 65.21476 * 5 4 3 7 7 N 1.46903 * 109.47405 * 174.95792 * 6 5 4 8 8 C 1.46901 * 111.00124 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47278 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47189 * 54.99057 * 9 8 7 11 11 C 1.47207 * 109.46802 * 294.99710 * 9 8 7 12 12 N 8.06865 * 138.49200 * 257.06650 * 2 1 3 13 13 C 1.53002 * 109.47156 * 174.99797 * 9 8 7 14 14 C 1.50704 * 109.46807 * 184.99682 * 13 9 8 15 15 H 1.07999 * 119.99783 * 0.02562 * 14 13 9 16 16 C 1.37877 * 119.99822 * 180.02562 * 14 13 9 17 17 N 1.31518 * 120.00012 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47304 * 89.99959 * 18 16 14 20 20 H 1.48504 * 109.46595 * 209.99799 * 18 16 14 21 21 H 1.48497 * 109.46909 * 329.99450 * 18 16 14 22 22 C 1.52998 * 117.50179 * 253.93964 * 4 3 2 23 23 C 1.52998 * 60.00235 * 252.51206 * 22 4 3 24 24 H 1.08998 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46816 * 299.99810 * 1 2 3 26 26 H 1.08998 * 109.46594 * 59.99809 * 1 2 3 27 27 H 1.09003 * 109.47234 * 300.00630 * 3 2 1 28 28 H 1.09010 * 109.46627 * 59.99926 * 3 2 1 29 29 H 1.09004 * 109.47038 * 185.21706 * 5 4 3 30 30 H 1.09000 * 109.47449 * 305.21375 * 5 4 3 31 31 H 1.08995 * 109.47525 * 294.96026 * 6 5 4 32 32 H 1.09005 * 109.46931 * 54.95616 * 6 5 4 33 33 H 1.00902 * 110.99775 * 303.95333 * 7 6 5 34 34 H 1.09002 * 109.47086 * 300.00284 * 8 7 6 35 35 H 1.09000 * 109.47180 * 59.99665 * 8 7 6 36 36 H 1.08999 * 109.47079 * 304.99552 * 13 9 8 37 37 H 1.09002 * 109.46709 * 65.00098 * 13 9 8 38 38 H 0.96995 * 119.99977 * 180.02562 * 17 16 14 39 39 H 1.09001 * 117.49797 * 0.02562 * 22 4 3 40 40 H 1.08996 * 117.49624 * 145.01994 * 22 4 3 41 41 H 1.08995 * 117.50021 * 252.51302 * 23 22 4 42 42 H 1.09007 * 117.49571 * 107.48669 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1097 0.0729 -0.8798 6 6 3.8079 0.3780 -2.3483 7 7 4.4615 -0.6237 -3.2011 8 6 4.1936 -0.3615 -4.6215 9 6 4.8885 -1.4234 -5.4761 10 1 4.5743 -2.4149 -5.1502 11 6 6.3474 -1.2969 -5.3252 12 7 7.4713 -1.1968 -5.2116 13 6 4.5085 -1.2248 -6.9448 14 6 5.0931 -2.3420 -7.7703 15 1 5.6768 -3.1163 -7.2948 16 6 4.8826 -2.3755 -9.1325 17 7 4.1714 -1.4328 -9.7114 18 14 5.6066 -3.7606 -10.1556 19 1 4.6356 -4.8818 -10.2285 20 1 5.8948 -3.2654 -11.5256 21 1 6.8648 -4.2355 -9.5260 22 6 4.2690 1.5033 1.3050 23 6 4.3465 2.4759 0.1265 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.6886 1.8464 -0.8899 28 1 1.6886 1.8463 0.8901 29 1 5.1885 0.0153 -0.7350 30 1 3.6550 -0.8791 -0.6057 31 1 2.7307 0.3472 -2.5120 32 1 4.1850 1.3698 -2.5983 33 1 5.4538 -0.6596 -3.0213 34 1 3.1190 -0.3972 -4.8011 35 1 4.5737 0.6250 -4.8869 36 1 3.4230 -1.2300 -7.0431 37 1 4.9007 -0.2702 -7.2957 38 1 4.0230 -1.4565 -10.6696 39 1 3.6648 1.7986 2.1629 40 1 5.1607 0.9207 1.5362 41 1 5.2892 2.5332 -0.4176 42 1 3.7933 3.4115 0.2090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336728154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:44 Heat of formation + Delta-G solvation = -15.081517 kcal Electronic energy + Delta-G solvation = -19615.627604 eV Core-core repulsion = 16595.988603 eV Total energy + Delta-G solvation = -3019.639001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.27996 -37.45624 -36.91909 -35.18190 -33.60940 -31.89773 -29.59964 -28.18344 -26.21123 -25.64907 -23.26998 -22.70073 -22.09800 -21.57110 -19.24225 -16.74075 -16.64849 -16.42817 -16.19147 -16.00160 -15.51606 -14.90286 -14.57697 -14.21831 -13.82872 -13.48081 -13.19372 -12.88650 -12.71527 -12.55193 -12.28489 -12.00558 -11.83028 -11.74929 -11.53568 -11.35760 -11.17895 -10.98384 -10.96613 -10.69121 -10.54741 -10.39326 -10.23749 -10.10733 -9.70360 -9.49126 -9.19776 -8.43667 -8.23847 -6.07743 -4.10675 3.27605 3.30914 3.37435 3.42346 3.60982 3.66428 3.70840 4.22014 4.43161 4.55750 4.58106 4.76240 4.84444 4.91751 5.02845 5.11291 5.18395 5.25964 5.30268 5.36553 5.39059 5.48071 5.50903 5.61122 5.63193 5.65556 5.77651 5.86614 5.90837 6.15660 6.21173 6.30252 6.43027 6.58408 6.95467 7.19382 7.45846 7.51829 7.56182 7.87602 8.25468 8.43180 8.93970 9.54647 11.03212 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.003259 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.595031 B = 8588.491059 C = 9203.679052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.100 3.900 4 C -0.120 4.120 5 C -0.073 4.073 6 C 0.065 3.935 7 N -0.692 5.692 8 C 0.069 3.931 9 C 0.006 3.994 10 H 0.111 0.889 11 C 0.243 3.757 12 N -0.478 5.478 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.171 4.171 23 C -0.170 4.170 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.336 0.664 34 H 0.090 0.910 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 7.404 20.782 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.023 3.977 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.064 4.064 7 N -0.322 5.322 8 C -0.061 4.061 9 C -0.016 4.016 10 H 0.129 0.871 11 C -0.074 4.074 12 N -0.155 5.155 13 C -0.006 4.006 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.208 4.208 23 C -0.207 4.207 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.153 0.847 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.251 6.991 20.838 22.851 hybrid contribution 0.291 0.302 -0.937 1.027 sum -5.959 7.294 19.901 22.017 Atomic orbital electron populations 1.22742 0.81124 1.02938 0.99731 1.87932 1.19362 1.27222 1.95303 1.21937 0.90914 0.84957 0.99852 1.21366 0.92265 0.98214 1.00220 1.20963 0.99593 0.97681 0.92848 1.21860 0.99962 0.92566 0.92035 1.60555 1.16528 1.50058 1.05099 1.22057 1.01487 0.96550 0.86048 1.19346 0.80824 1.00940 1.00516 0.87110 1.29251 0.95364 0.91895 0.90866 1.80944 1.13139 1.10128 1.11312 1.19164 0.98079 0.98070 0.85321 1.21160 1.33214 1.09502 0.92503 0.92484 1.24957 0.95057 0.96025 0.97973 1.69940 1.39312 1.33072 1.10777 0.86586 0.79650 0.82283 0.79544 1.20422 1.21191 1.19875 1.23106 1.02757 1.03085 0.91813 1.23041 1.01899 0.93459 1.02341 0.89453 0.94449 0.93989 0.92823 0.93521 0.92297 0.89621 0.90743 0.95731 0.84697 0.89155 0.94892 0.94208 0.95786 0.92824 0.88860 0.88560 0.88320 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.01 9.73 -35.23 -0.34 -4.35 16 3 C 0.10 0.90 5.52 37.16 0.20 1.10 16 4 C -0.12 -1.12 1.95 -154.51 -0.30 -1.42 16 5 C -0.07 -0.80 5.03 -26.74 -0.13 -0.94 16 6 C 0.06 0.78 5.49 -3.82 -0.02 0.76 16 7 N -0.69 -9.74 6.50 -113.78 -0.74 -10.48 16 8 C 0.07 1.06 5.12 -3.82 -0.02 1.04 16 9 C 0.01 0.11 2.42 -93.40 -0.23 -0.12 16 10 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 11 C 0.24 5.03 12.97 -20.82 -0.27 4.76 16 12 N -0.48 -10.61 18.52 42.08 0.78 -9.83 16 13 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 14 C -0.53 -14.19 8.60 -34.44 -0.30 -14.48 16 15 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.17 -1.39 9.87 -26.73 -0.26 -1.65 16 23 C -0.17 -1.38 9.97 -26.73 -0.27 -1.65 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.36 7.94 -51.92 -0.41 -0.05 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.51 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 4.85 7.81 -39.29 -0.31 4.54 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.17 355.85 -7.32 -37.49 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.39 Total: -0.68 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.70 Total: -8.98 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.78 Total: -45.34 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.34 Total: -4.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.17 -7.32 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336728154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.411 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds