Wall clock time and date at job start Mon Mar 30 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 C 1.53004 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47206 * 179.97438 * 4 3 2 6 6 C 1.46905 * 111.00279 * 66.04296 * 5 4 3 7 7 C 1.38589 * 111.00031 * 189.99752 * 5 4 3 8 8 N 1.31214 * 126.47321 * 0.02562 * 7 5 4 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 5 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 179.71560 * 7 5 4 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 5 23 23 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47345 * 299.99671 * 1 2 3 25 25 H 1.08999 * 109.47556 * 59.99905 * 1 2 3 26 26 H 1.09000 * 109.47142 * 240.00672 * 2 1 3 27 27 H 1.08994 * 109.47310 * 119.99673 * 2 1 3 28 28 H 1.08992 * 109.47402 * 60.00338 * 3 2 1 29 29 H 1.09004 * 109.47273 * 299.99389 * 3 2 1 30 30 H 1.08999 * 109.47362 * 59.99418 * 4 3 2 31 31 H 1.09008 * 109.47006 * 299.99710 * 4 3 2 32 32 H 1.08991 * 109.47322 * 183.95666 * 6 5 4 33 33 H 1.08997 * 109.46717 * 303.95743 * 6 5 4 34 34 H 1.09004 * 109.47145 * 63.95312 * 6 5 4 35 35 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 36 36 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 37 37 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 38 38 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 39 39 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 40 40 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 41 41 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 42 42 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8276 -0.0013 6 6 3.7105 3.5100 1.2520 7 6 5.4263 2.8711 -0.2265 8 7 6.2182 1.8428 -0.4190 9 7 7.4240 2.2484 -0.6016 10 6 7.4725 3.5488 -0.5375 11 6 8.7014 4.4060 -0.6994 12 6 8.8753 4.7746 -2.1740 13 6 10.1046 5.6312 -2.3361 14 1 10.7018 5.8874 -1.4735 15 6 10.4662 6.0887 -3.5855 16 7 9.7387 5.7772 -4.6358 17 14 11.9895 7.1511 -3.7863 18 1 13.1824 6.3991 -3.3204 19 1 12.1584 7.5089 -5.2175 20 1 11.8392 8.3893 -2.9805 21 7 6.2017 3.9918 -0.2957 22 6 5.7633 5.3814 -0.1436 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9564 -0.8901 30 1 3.9329 0.9289 -0.8908 31 1 3.9337 0.9287 0.8892 32 1 4.0226 4.5528 1.1970 33 1 2.6324 3.4609 1.4043 34 1 4.2176 3.0224 2.0846 35 1 8.5909 5.3150 -0.1082 36 1 9.5769 3.8542 -0.3571 37 1 8.9859 3.8656 -2.7653 38 1 7.9999 5.3264 -2.5164 39 1 9.9934 6.0988 -5.5149 40 1 5.8266 5.6695 0.9057 41 1 6.4046 6.0319 -0.7384 42 1 4.7326 5.4766 -0.4851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338399495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:47 Heat of formation + Delta-G solvation = 64.779366 kcal Electronic energy + Delta-G solvation = -20181.322106 eV Core-core repulsion = 17197.438884 eV Total energy + Delta-G solvation = -2983.883222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56837 -38.15583 -35.06535 -34.74169 -33.69200 -31.69762 -29.36030 -28.84548 -27.53638 -26.14224 -24.95996 -23.34821 -21.84567 -21.15537 -20.45394 -19.81654 -17.00287 -16.50478 -16.25238 -15.95297 -15.61796 -14.86028 -14.60661 -14.44569 -13.84796 -13.49531 -13.20767 -13.20636 -13.02599 -12.80363 -12.56837 -12.28218 -11.93724 -11.51976 -11.35794 -11.28422 -11.19208 -11.04409 -10.96740 -10.74031 -10.71439 -10.33129 -10.02926 -9.86210 -9.71246 -9.35813 -9.22485 -8.40361 -7.88761 -6.04538 -4.09094 2.16481 2.52816 3.29928 3.31056 3.36235 3.38359 3.72760 4.41521 4.62806 4.66892 4.74153 4.86259 4.93958 5.03429 5.08819 5.17187 5.19594 5.31112 5.32176 5.38987 5.42392 5.50261 5.56922 5.62580 5.64669 5.69283 5.81566 5.90006 6.01098 6.11849 6.25695 6.34686 6.47597 6.66541 6.72212 6.95447 7.44056 7.56466 7.70454 7.92875 8.30093 8.97000 9.23888 9.55442 11.06474 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.003330 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.156380 B = 8405.387268 C = 8516.186244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.071 3.929 5 N -0.452 5.452 6 C 0.015 3.985 7 C 0.334 3.666 8 N -0.325 5.325 9 N -0.295 5.295 10 C 0.211 3.789 11 C -0.030 4.030 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.483 5.483 22 C 0.075 3.925 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.014 0.986 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.322 -3.915 12.332 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.056 4.056 5 N -0.175 5.175 6 C -0.132 4.132 7 C -0.022 4.022 8 N -0.170 5.170 9 N -0.133 5.133 10 C -0.057 4.057 11 C -0.070 4.070 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.178 5.178 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.143 -5.068 11.612 21.317 hybrid contribution 0.597 1.688 0.417 1.839 sum -16.546 -3.380 12.029 20.734 Atomic orbital electron populations 1.21755 0.95702 1.01587 1.01784 1.21468 0.95860 0.96373 1.02461 1.21683 0.93897 0.97210 1.02758 1.22108 0.94800 0.85286 1.03395 1.58677 1.05123 1.19387 1.34347 1.22679 1.02539 0.99434 0.88559 1.22489 0.89969 0.84117 1.05654 1.74487 0.96993 1.23057 1.22427 1.73976 1.11703 1.08018 1.19641 1.25551 0.86512 0.92744 1.00844 1.20427 0.88676 0.95234 1.02670 1.19069 0.97061 0.97139 0.87387 1.21106 1.10076 1.31690 0.93490 0.92343 1.25017 0.96927 0.96371 0.95949 1.69967 1.38777 1.45272 0.99031 0.86612 0.83393 0.80712 0.77019 1.20076 1.21280 1.20222 1.46048 1.08252 1.07679 1.55865 1.22107 1.02578 0.79135 1.02977 0.92754 0.92883 0.92640 0.91558 0.91950 0.91877 0.90897 0.89014 0.93209 0.90737 0.89466 0.94357 0.91283 0.89315 0.95599 0.96768 0.92790 0.90824 0.88101 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.02 5.14 -26.73 -0.14 -1.16 16 4 C 0.07 0.84 4.44 -3.82 -0.02 0.82 16 5 N -0.45 -6.01 4.81 -182.37 -0.88 -6.88 16 6 C 0.02 0.15 9.17 60.07 0.55 0.70 16 7 C 0.33 5.81 7.20 -318.87 -2.30 3.51 16 8 N -0.33 -6.67 11.16 30.32 0.34 -6.34 16 9 N -0.30 -6.61 12.18 32.99 0.40 -6.21 16 10 C 0.21 4.31 7.32 -154.02 -1.13 3.18 16 11 C -0.03 -0.62 5.36 -27.88 -0.15 -0.77 16 12 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 13 C -0.53 -14.42 9.11 -34.44 -0.31 -14.74 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.48 -8.32 3.21 -121.46 -0.39 -8.71 16 22 C 0.08 0.94 9.21 59.85 0.55 1.49 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 6.47 -51.93 -0.34 0.14 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.27 7.75 -51.93 -0.40 0.86 16 31 H 0.05 0.60 8.12 -51.92 -0.42 0.18 16 32 H 0.07 0.67 5.42 -51.93 -0.28 0.38 16 33 H 0.09 0.64 6.30 -51.93 -0.33 0.31 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 41 H 0.10 1.35 7.88 -51.92 -0.41 0.94 16 42 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -33.24 341.47 -9.79 -43.03 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -7.16 Total: -3.87 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.97 Total: -6.45 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.21 Total: -54.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.24 -9.79 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.814 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds