Wall clock time and date at job start Mon Mar 30 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 C 1.53004 * 109.46916 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47206 * 179.97438 * 4 3 2 6 6 C 1.46905 * 111.00279 * 66.04296 * 5 4 3 7 7 C 1.38589 * 111.00031 * 189.99752 * 5 4 3 8 8 N 1.31214 * 126.47321 * 0.02562 * 7 5 4 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 5 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 179.71560 * 7 5 4 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 5 23 23 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47345 * 299.99671 * 1 2 3 25 25 H 1.08999 * 109.47556 * 59.99905 * 1 2 3 26 26 H 1.09000 * 109.47142 * 240.00672 * 2 1 3 27 27 H 1.08994 * 109.47310 * 119.99673 * 2 1 3 28 28 H 1.08992 * 109.47402 * 60.00338 * 3 2 1 29 29 H 1.09004 * 109.47273 * 299.99389 * 3 2 1 30 30 H 1.08999 * 109.47362 * 59.99418 * 4 3 2 31 31 H 1.09008 * 109.47006 * 299.99710 * 4 3 2 32 32 H 1.08991 * 109.47322 * 183.95666 * 6 5 4 33 33 H 1.08997 * 109.46717 * 303.95743 * 6 5 4 34 34 H 1.09004 * 109.47145 * 63.95312 * 6 5 4 35 35 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 36 36 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 37 37 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 38 38 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 39 39 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 40 40 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 41 41 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 42 42 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8276 -0.0013 6 6 3.7105 3.5100 1.2520 7 6 5.4263 2.8711 -0.2265 8 7 6.2182 1.8428 -0.4190 9 7 7.4240 2.2484 -0.6016 10 6 7.4725 3.5488 -0.5375 11 6 8.7014 4.4060 -0.6994 12 6 8.8753 4.7746 -2.1740 13 6 10.1046 5.6312 -2.3361 14 1 10.7018 5.8874 -1.4735 15 6 10.4662 6.0887 -3.5855 16 7 9.7387 5.7772 -4.6358 17 14 11.9895 7.1511 -3.7863 18 1 13.1824 6.3991 -3.3204 19 1 12.1584 7.5089 -5.2175 20 1 11.8392 8.3893 -2.9805 21 7 6.2017 3.9918 -0.2957 22 6 5.7633 5.3814 -0.1436 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9564 -0.8901 30 1 3.9329 0.9289 -0.8908 31 1 3.9337 0.9287 0.8892 32 1 4.0226 4.5528 1.1970 33 1 2.6324 3.4609 1.4043 34 1 4.2176 3.0224 2.0846 35 1 8.5909 5.3150 -0.1082 36 1 9.5769 3.8542 -0.3571 37 1 8.9859 3.8656 -2.7653 38 1 7.9999 5.3264 -2.5164 39 1 9.9934 6.0988 -5.5149 40 1 5.8266 5.6695 0.9057 41 1 6.4046 6.0319 -0.7384 42 1 4.7326 5.4766 -0.4851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338399495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:47 Heat of formation + Delta-G solvation = 46.178249 kcal Electronic energy + Delta-G solvation = -20182.128711 eV Core-core repulsion = 17197.438884 eV Total energy + Delta-G solvation = -2984.689827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.00177 -39.18107 -36.40786 -35.96352 -35.21651 -33.54648 -30.61801 -29.90100 -28.78560 -27.47963 -26.47622 -24.30951 -23.66320 -21.99963 -21.71368 -21.25135 -18.63976 -18.06830 -17.57958 -17.16508 -16.61039 -16.44432 -15.97917 -15.38505 -15.00240 -14.94609 -14.44187 -14.37832 -14.16262 -13.89912 -13.83716 -13.33064 -13.23943 -12.84232 -12.75880 -12.61867 -12.50429 -12.28036 -12.04315 -12.00572 -11.86728 -11.81119 -11.47416 -11.38634 -11.30025 -11.14671 -10.72884 -10.56466 -9.26700 -8.19949 -6.32894 0.78010 1.25812 1.43570 1.47105 1.54666 1.79636 2.42396 2.62086 3.14103 3.48219 3.73581 3.83123 3.88334 4.00862 4.09792 4.25585 4.28034 4.32013 4.41223 4.52700 4.56523 4.63845 4.65172 4.66242 4.76270 4.81536 4.87834 4.93885 4.98105 5.03099 5.14115 5.28536 5.37454 5.44124 5.48423 5.51613 5.58703 5.69120 5.78531 6.13963 6.18628 6.83281 7.37352 7.75015 8.92014 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.003330 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.156380 B = 8405.387268 C = 8516.186244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.105 4.105 4 C 0.072 3.928 5 N -0.451 5.451 6 C 0.012 3.988 7 C 0.350 3.650 8 N -0.364 5.364 9 N -0.334 5.334 10 C 0.195 3.805 11 C -0.013 4.013 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.074 0.926 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.259 1.259 21 N -0.481 5.481 22 C 0.067 3.933 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.087 0.913 37 H -0.020 1.020 38 H -0.006 1.006 39 H 0.263 0.737 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.455 -2.235 14.252 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.055 4.055 5 N -0.175 5.175 6 C -0.134 4.134 7 C -0.008 4.008 8 N -0.209 5.209 9 N -0.172 5.172 10 C -0.075 4.075 11 C -0.053 4.053 12 C 0.004 3.996 13 C -0.578 4.578 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.184 1.184 21 N -0.176 5.176 22 C -0.074 4.074 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.106 0.894 37 H -0.002 1.002 38 H 0.013 0.987 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.299 -3.373 13.564 23.027 hybrid contribution 0.810 1.132 -0.176 1.403 sum -17.489 -2.241 13.388 22.139 Atomic orbital electron populations 1.21733 0.94478 1.02108 1.02243 1.21471 0.96853 0.95699 1.02162 1.21622 0.91069 0.98033 1.03587 1.22152 0.96949 0.84433 1.01941 1.58899 1.02081 1.20273 1.36277 1.22876 1.04544 0.99559 0.86416 1.22961 0.91227 0.83528 1.03078 1.74380 0.96942 1.24696 1.24866 1.73855 1.13219 1.09447 1.20694 1.25322 0.87698 0.92383 1.02085 1.20127 0.89208 0.96547 0.99386 1.18835 0.95982 0.94557 0.90179 1.21576 1.10600 1.31444 0.94162 0.90788 1.26026 1.00374 0.97834 0.95597 1.70126 1.40979 1.46837 0.99632 0.85433 0.79013 0.79194 0.77006 1.19262 1.21361 1.18381 1.46215 1.07095 1.09274 1.55029 1.22476 1.03305 0.76375 1.05265 0.92289 0.91892 0.92677 0.92615 0.91649 0.89747 0.91180 0.91817 0.93458 0.89429 0.86325 0.94564 0.88288 0.89415 1.00186 0.98737 0.92792 0.87227 0.89150 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.75 5.93 30.59 0.18 -1.57 16 3 C -0.11 -1.62 5.14 30.60 0.16 -1.46 16 4 C 0.07 1.66 4.44 86.31 0.38 2.04 16 5 N -0.45 -11.30 4.81 -730.91 -3.51 -14.81 16 6 C 0.01 0.20 9.17 127.69 1.17 1.37 16 7 C 0.35 12.02 7.20 260.11 1.87 13.90 16 8 N -0.36 -15.40 11.16 -58.00 -0.65 -16.05 16 9 N -0.33 -15.50 12.18 -49.54 -0.60 -16.10 16 10 C 0.19 8.06 7.32 137.64 1.01 9.07 16 11 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 12 C 0.04 2.27 4.95 29.85 0.15 2.42 16 13 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 14 H 0.07 3.76 7.74 -2.92 -0.02 3.74 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 17 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 N -0.48 -16.22 3.21 -538.17 -1.73 -17.94 16 22 C 0.07 1.52 9.21 127.77 1.18 2.70 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.96 6.47 -2.39 -0.02 0.94 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16 31 H 0.05 1.11 8.12 -2.38 -0.02 1.09 16 32 H 0.09 1.21 5.42 -2.39 -0.01 1.20 16 33 H 0.12 1.21 6.30 -2.39 -0.02 1.20 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 3.46 7.92 -2.39 -0.02 3.44 16 36 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 37 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 38 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.11 1.72 7.86 -2.39 -0.02 1.71 16 41 H 0.09 2.29 7.88 -2.38 -0.02 2.28 16 42 H 0.11 2.04 7.57 -2.39 -0.02 2.02 16 Total: -1.00 -74.95 341.47 4.47 -70.48 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.98 Total: 8.05 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 7.67 Total: -1.97 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -6.20 Total: -121.93 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.95 4.47 -70.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.660 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds