Wall clock time and date at job start Mon Mar 30 2020 00:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 N 1.46893 * 109.47162 * 179.89529 * 3 2 1 5 5 C 1.46895 * 110.99882 * 287.82711 * 4 3 2 6 6 C 1.52996 * 109.47558 * 294.94057 * 5 4 3 7 7 C 1.38596 * 111.00016 * 163.87853 * 4 3 2 8 8 N 1.31210 * 126.47002 * 359.97306 * 7 4 3 9 9 N 1.28531 * 109.86114 * 180.02562 * 8 7 4 10 10 C 1.30297 * 110.05129 * 0.02562 * 9 8 7 11 11 C 1.50693 * 126.34933 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47396 * 90.01970 * 11 10 9 13 13 C 1.50697 * 109.47292 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99810 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99897 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00291 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99807 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46945 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47200 * 120.00155 * 17 15 13 20 20 H 1.48496 * 109.46855 * 239.99958 * 17 15 13 21 21 N 1.36453 * 126.47399 * 180.28668 * 7 4 3 22 22 C 1.46500 * 127.13494 * 359.97438 * 21 7 4 23 23 H 1.09001 * 109.47100 * 60.00100 * 1 2 3 24 24 H 1.09006 * 109.46734 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46689 * 299.99812 * 1 2 3 26 26 H 1.08998 * 109.46689 * 240.00187 * 2 1 3 27 27 H 1.09001 * 109.47100 * 119.99900 * 2 1 3 28 28 H 1.08998 * 109.47018 * 59.89128 * 3 2 1 29 29 H 1.09004 * 109.46940 * 299.89793 * 3 2 1 30 30 H 1.09003 * 109.47029 * 54.94479 * 5 4 3 31 31 H 1.09003 * 109.47498 * 174.94086 * 5 4 3 32 32 H 1.09000 * 109.47503 * 305.46156 * 6 5 4 33 33 H 1.09002 * 109.47179 * 65.46297 * 6 5 4 34 34 H 1.09000 * 109.47496 * 185.46094 * 6 5 4 35 35 H 1.08999 * 109.46885 * 330.02058 * 11 10 9 36 36 H 1.08995 * 109.47388 * 210.01911 * 11 10 9 37 37 H 1.08998 * 109.46577 * 59.99916 * 12 11 10 38 38 H 1.09004 * 109.46898 * 300.00525 * 12 11 10 39 39 H 0.96996 * 120.00555 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46922 * 270.19634 * 22 21 7 41 41 H 1.09000 * 109.47242 * 30.20194 * 22 21 7 42 42 H 1.09003 * 109.46924 * 150.20100 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0025 5 6 4.0331 1.0234 1.3092 6 6 3.6462 2.0567 2.3692 7 6 4.0063 2.6853 -0.3567 8 7 3.3012 3.7477 -0.6662 9 7 4.0861 4.7256 -0.9485 10 6 5.3282 4.3480 -0.8373 11 6 6.5463 5.2007 -1.0821 12 6 6.9568 5.8899 0.2207 13 6 8.1746 6.7431 -0.0243 14 1 8.6118 6.7895 -1.0107 15 6 8.7305 7.4644 1.0108 16 7 8.1984 7.4076 2.2121 17 14 10.2405 8.5215 0.7072 18 1 10.6424 8.4126 -0.7182 19 1 9.9261 9.9372 1.0267 20 1 11.3537 8.0544 1.5720 21 7 5.3215 3.0334 -0.4610 22 6 6.4850 2.1771 -0.2177 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6751 1.9569 0.8890 29 1 1.6782 1.9558 -0.8909 30 1 3.6118 0.0541 1.5758 31 1 5.1191 0.9456 1.2572 32 1 3.9842 3.0441 2.0546 33 1 2.5630 2.0649 2.4902 34 1 4.1158 1.7972 3.3180 35 1 6.3167 5.9545 -1.8352 36 1 7.3646 4.5727 -1.4343 37 1 7.1863 5.1360 0.9738 38 1 6.1384 6.5179 0.5730 39 1 8.5893 7.9153 2.9403 40 1 6.7744 2.2467 0.8309 41 1 6.2324 1.1442 -0.4572 42 1 7.3140 2.5035 -0.8457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339917661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:06 Heat of formation + Delta-G solvation = 50.167851 kcal Electronic energy + Delta-G solvation = -20770.298207 eV Core-core repulsion = 17785.781381 eV Total energy + Delta-G solvation = -2984.516825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.01640 -39.55602 -36.39794 -35.70828 -34.40334 -33.51818 -31.75167 -29.78538 -28.47904 -27.16515 -26.92643 -24.40460 -23.63881 -22.52561 -21.42471 -20.95414 -18.65629 -18.05140 -17.69725 -17.26753 -16.62961 -16.37610 -15.83321 -15.33312 -14.96796 -14.82079 -14.59109 -14.35619 -14.19917 -13.99844 -13.60332 -13.25518 -13.10625 -12.98096 -12.87834 -12.69729 -12.57264 -12.42847 -12.11527 -12.04427 -11.98294 -11.81760 -11.55364 -11.34304 -11.27916 -11.11171 -10.68537 -10.58392 -9.23326 -8.20887 -6.33216 0.79272 1.31591 1.42391 1.44016 1.56813 1.81221 2.41797 2.65193 3.13477 3.50364 3.72895 3.76098 3.88946 3.99796 4.09513 4.16008 4.23526 4.29292 4.32192 4.45154 4.50339 4.56802 4.65391 4.68355 4.73829 4.82878 4.90176 4.91285 4.94475 5.06383 5.09094 5.21704 5.29182 5.42471 5.44583 5.53799 5.59357 5.72920 5.78114 6.14955 6.21069 6.82991 7.36968 7.78218 8.91378 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.037857 B = 0.003930 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.453467 B = 7123.782966 C = 7284.806816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.064 3.936 4 N -0.442 5.442 5 C 0.042 3.958 6 C -0.184 4.184 7 C 0.358 3.642 8 N -0.364 5.364 9 N -0.334 5.334 10 C 0.193 3.807 11 C -0.014 4.014 12 C 0.045 3.955 13 C -0.538 4.538 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.256 1.256 19 H -0.284 1.284 20 H -0.277 1.277 21 N -0.480 5.480 22 C 0.068 3.932 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.011 0.989 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.097 0.903 37 H -0.005 1.005 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -19.797 -2.203 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.062 4.062 4 N -0.166 5.166 5 C -0.084 4.084 6 C -0.243 4.243 7 C 0.001 3.999 8 N -0.208 5.208 9 N -0.173 5.173 10 C -0.077 4.077 11 C -0.053 4.053 12 C 0.007 3.993 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.180 1.180 19 H -0.210 1.210 20 H -0.203 1.203 21 N -0.175 5.175 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.030 0.970 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.013 0.987 38 H -0.002 1.002 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.449 -19.251 -2.651 21.190 hybrid contribution 1.382 0.847 1.008 1.909 sum -7.067 -18.404 -1.643 19.783 Atomic orbital electron populations 1.21718 0.94401 1.02732 1.01893 1.21497 0.96310 0.93277 1.03540 1.22247 0.82172 0.99614 1.02182 1.59144 1.11346 1.16245 1.29838 1.22675 1.02061 1.00060 0.83616 1.22373 1.02722 0.97973 1.01222 1.22835 0.81764 0.92842 1.02443 1.74387 1.26312 0.96197 1.23946 1.73861 0.99616 1.22389 1.21388 1.25272 0.97442 0.83256 1.01714 1.20121 0.89062 0.95976 1.00172 1.18816 0.94874 0.94094 0.91565 1.21629 1.12213 1.27345 0.96389 0.90932 1.25996 1.00814 0.98183 0.94748 1.70124 1.42486 1.42986 1.01890 0.85346 0.78487 0.77879 0.79018 1.17964 1.20981 1.20285 1.46183 1.07558 1.10995 1.52777 1.22445 0.85668 0.95188 1.04019 0.93113 0.90738 0.92675 0.90908 0.90111 0.93403 0.91393 0.85172 0.89092 0.96954 0.91455 0.89574 0.89593 0.88434 0.98661 1.00204 0.92816 0.89896 0.86294 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.11 -1.59 5.99 30.60 0.18 -1.41 16 3 C 0.06 1.46 4.42 86.30 0.38 1.85 16 4 N -0.44 -10.88 4.73 -706.04 -3.34 -14.22 16 5 C 0.04 0.79 5.77 86.30 0.50 1.29 16 6 C -0.18 -4.34 9.34 71.98 0.67 -3.67 16 7 C 0.36 12.17 5.63 260.11 1.47 13.63 16 8 N -0.36 -15.27 11.02 -58.00 -0.64 -15.91 16 9 N -0.33 -15.49 12.18 -49.54 -0.60 -16.09 16 10 C 0.19 7.99 7.32 137.64 1.01 8.99 16 11 C -0.01 -0.57 5.53 29.85 0.16 -0.40 16 12 C 0.04 2.36 4.96 29.85 0.15 2.51 16 13 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 17 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 N -0.48 -16.16 3.21 -538.18 -1.73 -17.88 16 22 C 0.07 1.56 9.35 127.77 1.19 2.76 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.91 6.68 -2.39 -0.02 0.90 16 28 H 0.05 1.16 6.08 -2.39 -0.01 1.14 16 29 H 0.07 1.87 7.49 -2.38 -0.02 1.86 16 30 H 0.13 1.56 6.54 -2.39 -0.02 1.54 16 31 H 0.09 1.57 5.48 -2.39 -0.01 1.55 16 32 H 0.01 0.39 7.01 -2.39 -0.02 0.37 16 33 H 0.07 1.50 6.55 -2.39 -0.02 1.48 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.10 3.45 7.26 -2.39 -0.02 3.43 16 37 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 39 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 41 H 0.12 1.96 7.58 -2.39 -0.02 1.94 16 42 H 0.10 2.20 7.25 -2.39 -0.02 2.18 16 Total: -1.00 -74.12 335.03 4.12 -70.00 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.99 Total: 9.78 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 7.12 Total: -4.57 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.02 Total: -120.51 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.12 4.12 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339917661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.165 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds