Wall clock time and date at job start Mon Mar 30 2020 00:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47207 * 2 1 4 4 C 1.50698 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.30295 * 126.34817 * 269.68675 * 4 3 2 6 6 N 1.28525 * 110.05297 * 179.82983 * 5 4 3 7 7 C 1.31211 * 109.86304 * 0.44630 * 6 5 4 8 8 N 1.38582 * 126.47711 * 179.73444 * 7 6 5 9 9 C 1.46902 * 110.99701 * 295.95181 * 8 7 6 10 10 C 1.46903 * 111.00038 * 59.90152 * 8 7 6 11 11 H 1.08995 * 109.47018 * 300.00608 * 10 8 7 12 12 C 1.53000 * 109.46823 * 60.00360 * 10 8 7 13 13 C 1.50699 * 109.47083 * 179.97438 * 10 8 7 14 14 H 1.08001 * 119.99850 * 0.02562 * 13 10 8 15 15 C 1.37870 * 119.99658 * 180.02562 * 13 10 8 16 16 N 1.31519 * 120.00342 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 120.00009 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47253 * 89.99806 * 17 15 13 19 19 H 1.48494 * 109.47380 * 210.00242 * 17 15 13 20 20 H 1.48505 * 109.46907 * 330.00199 * 17 15 13 21 21 N 1.36458 * 107.05431 * 359.73699 * 7 6 5 22 22 C 1.46501 * 127.14015 * 180.02562 * 21 7 6 23 23 C 1.53004 * 109.46763 * 271.32544 * 22 21 7 24 24 H 1.08996 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47033 * 299.99682 * 1 2 3 26 26 H 1.09000 * 109.47048 * 60.00358 * 1 2 3 27 27 H 1.09002 * 109.47285 * 120.00130 * 2 1 3 28 28 H 1.08994 * 109.46847 * 239.99623 * 2 1 3 29 29 H 1.09002 * 109.47104 * 300.00241 * 3 2 1 30 30 H 1.08999 * 109.46864 * 60.00215 * 3 2 1 31 31 H 1.08997 * 109.47360 * 65.94528 * 9 8 7 32 32 H 1.09007 * 109.46832 * 185.94312 * 9 8 7 33 33 H 1.08999 * 109.46983 * 305.93519 * 9 8 7 34 34 H 1.09003 * 109.47256 * 59.99462 * 12 10 8 35 35 H 1.08992 * 109.47185 * 180.02562 * 12 10 8 36 36 H 1.09004 * 109.47271 * 299.99911 * 12 10 8 37 37 H 0.96999 * 119.99802 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47197 * 31.32303 * 22 21 7 39 39 H 1.08993 * 109.46837 * 151.33004 * 22 21 7 40 40 H 1.09005 * 109.46771 * 175.93991 * 23 22 21 41 41 H 1.08998 * 109.47290 * 295.94418 * 23 22 21 42 42 H 1.09007 * 109.46938 * 55.94382 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3197 1.4479 1.0485 6 7 5.5532 1.4424 0.6873 7 6 5.6343 1.4425 -0.6223 8 7 6.7975 1.4426 -1.3756 9 6 7.5655 2.6757 -1.1579 10 6 7.6132 0.2560 -1.0847 11 1 7.8811 0.2494 -0.0282 12 6 6.8142 -1.0059 -1.4162 13 6 8.8664 0.2906 -1.9211 14 1 9.0396 1.1121 -2.6005 15 6 9.7915 -0.7265 -1.8189 16 7 9.5802 -1.7271 -0.9920 17 14 11.3452 -0.6834 -2.8551 18 1 12.4157 0.0295 -2.1127 19 1 11.7848 -2.0716 -3.1462 20 1 11.0703 0.0265 -4.1302 21 7 4.3570 1.4426 -1.1024 22 6 3.9399 1.4423 -2.5067 23 6 3.8270 2.8843 -3.0055 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 7.9217 2.7050 -0.1282 32 1 8.4173 2.6980 -1.8378 33 1 6.9276 3.5392 -1.3465 34 1 6.5462 -0.9993 -2.4728 35 1 7.4192 -1.8863 -1.2000 36 1 5.9075 -1.0312 -0.8116 37 1 10.2314 -2.4425 -0.9199 38 1 4.6779 0.9077 -3.1048 39 1 2.9721 0.9494 -2.5981 40 1 3.5871 2.8832 -4.0688 41 1 3.0386 3.3983 -2.4556 42 1 4.7750 3.3987 -2.8474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340124389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:16 Heat of formation + Delta-G solvation = 72.824156 kcal Electronic energy + Delta-G solvation = -21351.274334 eV Core-core repulsion = 18367.739959 eV Total energy + Delta-G solvation = -2983.534374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.45628 -37.05802 -35.64090 -34.79306 -32.86457 -30.37523 -29.96843 -29.24269 -26.80690 -25.39282 -24.36403 -23.79199 -22.06312 -21.56300 -20.12905 -19.37960 -16.76252 -16.33123 -15.79651 -15.45000 -14.95127 -14.74418 -14.49901 -13.99771 -13.71383 -13.36961 -13.10727 -12.91723 -12.43524 -12.34715 -12.15537 -11.94713 -11.72791 -11.36950 -11.28742 -11.13755 -11.01062 -10.87942 -10.86856 -10.78140 -10.32184 -10.26975 -10.10190 -9.94152 -9.67071 -9.07694 -8.52599 -8.34708 -7.69338 -6.07478 -4.14224 2.24679 2.75743 3.27582 3.34219 3.36430 3.40019 4.33038 4.49210 4.65400 4.73600 4.83129 4.91790 5.05384 5.20751 5.24036 5.27671 5.33925 5.55551 5.57376 5.65195 5.70188 5.81360 5.87361 5.90290 6.04922 6.09194 6.18036 6.30232 6.36777 6.55131 6.62496 6.75168 6.91470 6.96444 7.19953 7.40146 7.66926 7.75751 7.92602 8.18615 8.47481 8.89546 9.32112 9.50736 10.99485 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.005138 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.572544 B = 5448.551672 C = 5686.396750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.023 4.023 4 C 0.156 3.844 5 N -0.292 5.292 6 N -0.322 5.322 7 C 0.382 3.618 8 N -0.472 5.472 9 C 0.052 3.948 10 C 0.225 3.775 11 H 0.021 0.979 12 C -0.129 4.129 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.901 3.099 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.468 5.468 22 C 0.109 3.891 23 C -0.163 4.163 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 6.035 -3.901 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.063 4.063 4 C -0.111 4.111 5 N -0.133 5.133 6 N -0.165 5.165 7 C 0.026 3.974 8 N -0.200 5.200 9 C -0.096 4.096 10 C 0.120 3.880 11 H 0.038 0.962 12 C -0.187 4.187 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.162 5.162 22 C -0.014 4.014 23 C -0.221 4.221 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.024 5.842 -2.905 16.380 hybrid contribution 0.732 -0.129 -1.195 1.408 sum -14.292 5.713 -4.100 15.928 Atomic orbital electron populations 1.21754 0.95180 1.01901 1.01839 1.21520 0.95815 0.95581 1.03053 1.19951 0.84187 0.98381 1.03811 1.24561 0.95941 1.07530 0.83091 1.73922 0.96915 1.18045 1.24395 1.74673 1.11350 1.21362 1.09112 1.22809 0.86236 1.00018 0.88313 1.59253 1.02913 1.06653 1.51162 1.22179 0.97522 0.88572 1.01283 1.19415 0.89575 0.82419 0.96543 0.96156 1.21797 0.97005 1.02129 0.97818 1.21051 1.02420 1.07810 1.23692 0.91560 1.24916 0.98354 0.95205 0.95491 1.69904 1.35655 1.10628 1.36457 0.86459 0.82976 0.77273 0.80473 1.20603 1.21212 1.19805 1.46431 1.06473 1.55312 1.07967 1.21740 1.01874 0.98950 0.78821 1.22098 1.02957 0.95555 1.01517 0.92486 0.92430 0.92743 0.91007 0.92038 0.90524 0.88751 0.94665 0.89304 0.93955 0.94996 0.88999 0.97999 0.92739 0.87812 0.89628 0.90645 0.92559 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 3 C -0.02 -0.27 5.41 -27.89 -0.15 -0.42 16 4 C 0.16 2.62 7.32 -154.01 -1.13 1.50 16 5 N -0.29 -6.12 12.18 32.99 0.40 -5.71 16 6 N -0.32 -7.53 12.14 30.31 0.37 -7.16 16 7 C 0.38 8.13 5.02 -318.87 -1.60 6.53 16 8 N -0.47 -10.43 4.66 -176.08 -0.82 -11.25 16 9 C 0.05 1.05 9.14 60.07 0.55 1.60 16 10 C 0.22 5.80 2.00 -68.86 -0.14 5.66 16 11 H 0.02 0.61 8.09 -51.93 -0.42 0.19 16 12 C -0.13 -3.26 8.84 37.16 0.33 -2.94 16 13 C -0.51 -13.64 7.95 -34.44 -0.27 -13.92 16 14 H 0.07 1.71 6.40 -52.49 -0.34 1.38 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 N -0.47 -8.06 2.81 -114.08 -0.32 -8.38 16 22 C 0.11 1.42 6.62 -4.04 -0.03 1.39 16 23 C -0.16 -1.75 10.24 37.16 0.38 -1.37 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.76 6.31 -51.92 -0.33 1.43 16 33 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 36 H 0.00 0.02 7.22 -51.93 -0.38 -0.35 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 0.87 7.80 -51.93 -0.41 0.47 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -31.61 341.52 -8.78 -40.39 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.22 Total: -1.58 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.94 Total: -2.61 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.26 Total: -57.15 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.61 -8.78 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.211 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds