Wall clock time and date at job start Mon Mar 30 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47207 * 2 1 4 4 C 1.50698 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.30295 * 126.34817 * 269.68675 * 4 3 2 6 6 N 1.28525 * 110.05297 * 179.82983 * 5 4 3 7 7 C 1.31211 * 109.86304 * 0.44630 * 6 5 4 8 8 N 1.38582 * 126.47711 * 179.73444 * 7 6 5 9 9 C 1.46902 * 110.99701 * 295.95181 * 8 7 6 10 10 C 1.46903 * 111.00038 * 59.90152 * 8 7 6 11 11 H 1.08995 * 109.47018 * 300.00608 * 10 8 7 12 12 C 1.53000 * 109.46823 * 60.00360 * 10 8 7 13 13 C 1.50699 * 109.47083 * 179.97438 * 10 8 7 14 14 H 1.08001 * 119.99850 * 0.02562 * 13 10 8 15 15 C 1.37870 * 119.99658 * 180.02562 * 13 10 8 16 16 N 1.31519 * 120.00342 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 120.00009 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47253 * 89.99806 * 17 15 13 19 19 H 1.48494 * 109.47380 * 210.00242 * 17 15 13 20 20 H 1.48505 * 109.46907 * 330.00199 * 17 15 13 21 21 N 1.36458 * 107.05431 * 359.73699 * 7 6 5 22 22 C 1.46501 * 127.14015 * 180.02562 * 21 7 6 23 23 C 1.53004 * 109.46763 * 271.32544 * 22 21 7 24 24 H 1.08996 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47033 * 299.99682 * 1 2 3 26 26 H 1.09000 * 109.47048 * 60.00358 * 1 2 3 27 27 H 1.09002 * 109.47285 * 120.00130 * 2 1 3 28 28 H 1.08994 * 109.46847 * 239.99623 * 2 1 3 29 29 H 1.09002 * 109.47104 * 300.00241 * 3 2 1 30 30 H 1.08999 * 109.46864 * 60.00215 * 3 2 1 31 31 H 1.08997 * 109.47360 * 65.94528 * 9 8 7 32 32 H 1.09007 * 109.46832 * 185.94312 * 9 8 7 33 33 H 1.08999 * 109.46983 * 305.93519 * 9 8 7 34 34 H 1.09003 * 109.47256 * 59.99462 * 12 10 8 35 35 H 1.08992 * 109.47185 * 180.02562 * 12 10 8 36 36 H 1.09004 * 109.47271 * 299.99911 * 12 10 8 37 37 H 0.96999 * 119.99802 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47197 * 31.32303 * 22 21 7 39 39 H 1.08993 * 109.46837 * 151.33004 * 22 21 7 40 40 H 1.09005 * 109.46771 * 175.93991 * 23 22 21 41 41 H 1.08998 * 109.47290 * 295.94418 * 23 22 21 42 42 H 1.09007 * 109.46938 * 55.94382 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3197 1.4479 1.0485 6 7 5.5532 1.4424 0.6873 7 6 5.6343 1.4425 -0.6223 8 7 6.7975 1.4426 -1.3756 9 6 7.5655 2.6757 -1.1579 10 6 7.6132 0.2560 -1.0847 11 1 7.8811 0.2494 -0.0282 12 6 6.8142 -1.0059 -1.4162 13 6 8.8664 0.2906 -1.9211 14 1 9.0396 1.1121 -2.6005 15 6 9.7915 -0.7265 -1.8189 16 7 9.5802 -1.7271 -0.9920 17 14 11.3452 -0.6834 -2.8551 18 1 12.4157 0.0295 -2.1127 19 1 11.7848 -2.0716 -3.1462 20 1 11.0703 0.0265 -4.1302 21 7 4.3570 1.4426 -1.1024 22 6 3.9399 1.4423 -2.5067 23 6 3.8270 2.8843 -3.0055 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 7.9217 2.7050 -0.1282 32 1 8.4173 2.6980 -1.8378 33 1 6.9276 3.5392 -1.3465 34 1 6.5462 -0.9993 -2.4728 35 1 7.4192 -1.8863 -1.2000 36 1 5.9075 -1.0312 -0.8116 37 1 10.2314 -2.4425 -0.9199 38 1 4.6779 0.9077 -3.1048 39 1 2.9721 0.9494 -2.5981 40 1 3.5871 2.8832 -4.0688 41 1 3.0386 3.3983 -2.4556 42 1 4.7750 3.3987 -2.8474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340124389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:15 Heat of formation + Delta-G solvation = 54.488932 kcal Electronic energy + Delta-G solvation = -21352.069409 eV Core-core repulsion = 18367.739959 eV Total energy + Delta-G solvation = -2984.329449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.94637 -38.84076 -36.82658 -35.84459 -34.82238 -31.60025 -31.46930 -30.94887 -28.11763 -27.20551 -26.12333 -24.93383 -23.53216 -22.79165 -21.37941 -21.05305 -18.51851 -17.99643 -17.36166 -16.93918 -16.45055 -15.97652 -15.73034 -15.51645 -15.02542 -14.92526 -14.28063 -14.12945 -13.94766 -13.72083 -13.30661 -13.07119 -13.03068 -12.82008 -12.73881 -12.71325 -12.38183 -12.25416 -12.21434 -12.16320 -12.14172 -12.03334 -11.71075 -11.42313 -11.10096 -10.99652 -10.59594 -9.90809 -9.55236 -8.15499 -6.30263 0.80757 1.39471 1.45772 1.46618 1.57239 1.84737 2.41488 3.02398 3.16738 3.39187 3.70437 3.94825 4.06621 4.11169 4.15039 4.34692 4.37906 4.43122 4.55352 4.61437 4.67393 4.71408 4.74868 4.81527 4.85192 4.88127 4.96357 4.97209 5.03000 5.17822 5.22989 5.24064 5.31171 5.35435 5.46127 5.56994 5.64326 5.90914 5.98360 6.13405 6.63419 6.80585 7.39295 7.79580 8.91891 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.005138 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.572544 B = 5448.551672 C = 5686.396750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.022 4.022 4 C 0.181 3.819 5 N -0.337 5.337 6 N -0.368 5.368 7 C 0.361 3.639 8 N -0.463 5.463 9 C 0.056 3.944 10 C 0.235 3.765 11 H -0.033 1.033 12 C -0.109 4.109 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.971 3.029 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.259 1.259 21 N -0.462 5.462 22 C 0.099 3.901 23 C -0.155 4.155 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.012 0.988 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.066 0.934 36 H -0.004 1.004 37 H 0.263 0.737 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 7.097 -6.264 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.061 4.061 4 C -0.088 4.088 5 N -0.177 5.177 6 N -0.211 5.211 7 C 0.003 3.997 8 N -0.189 5.189 9 C -0.091 4.091 10 C 0.129 3.871 11 H -0.015 1.015 12 C -0.167 4.167 13 C -0.560 4.560 14 H 0.093 0.907 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.795 3.205 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.183 1.183 21 N -0.155 5.155 22 C -0.022 4.022 23 C -0.213 4.213 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.031 0.969 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.077 6.927 -5.287 19.172 hybrid contribution 1.234 -0.450 -0.421 1.379 sum -15.843 6.477 -5.708 18.043 Atomic orbital electron populations 1.21708 0.92534 1.02584 1.03140 1.21481 0.97973 0.94509 1.01690 1.20303 0.80096 0.99529 1.06205 1.25617 0.97832 1.03423 0.81921 1.73829 0.96594 1.20830 1.26414 1.74538 1.13170 1.22645 1.10749 1.22702 0.87170 1.01712 0.88114 1.59188 1.02921 1.05889 1.50917 1.22185 0.98085 0.88934 0.99937 1.19084 0.90391 0.84304 0.93344 1.01485 1.21538 0.96097 1.00956 0.98151 1.21331 1.02893 1.08095 1.23713 0.90697 1.25804 1.01607 0.94704 0.96549 1.70059 1.36812 1.11354 1.37970 0.85362 0.78683 0.77286 0.79138 1.20303 1.21082 1.18346 1.46673 1.04896 1.54137 1.09783 1.22165 1.03007 1.00961 0.76089 1.22067 1.02217 0.93457 1.03531 0.92196 0.91780 0.90781 0.93550 0.92401 0.86824 0.87600 0.96881 0.89034 0.91197 0.93885 0.91508 0.98451 0.92754 0.89398 0.85989 0.87664 0.91090 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 3 C -0.02 -0.43 5.41 29.85 0.16 -0.27 16 4 C 0.18 5.87 7.32 137.64 1.01 6.88 16 5 N -0.34 -14.39 12.18 -49.54 -0.60 -14.99 16 6 N -0.37 -17.91 12.14 -58.00 -0.70 -18.61 16 7 C 0.36 15.63 5.02 260.11 1.31 16.94 16 8 N -0.46 -20.83 4.66 -710.99 -3.31 -24.14 16 9 C 0.06 2.29 9.14 127.69 1.17 3.46 16 10 C 0.23 12.57 2.00 44.17 0.09 12.65 16 11 H -0.03 -2.06 8.09 -2.39 -0.02 -2.08 16 12 C -0.11 -5.69 8.84 71.98 0.64 -5.05 16 13 C -0.52 -28.27 7.95 25.60 0.20 -28.06 16 14 H 0.07 3.85 6.40 -2.91 -0.02 3.83 16 15 C 0.01 0.68 5.30 84.65 0.45 1.13 16 16 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 17 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 N -0.46 -15.41 2.81 -514.85 -1.45 -16.86 16 22 C 0.10 2.30 6.62 86.38 0.57 2.87 16 23 C -0.16 -2.79 10.24 71.98 0.74 -2.06 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.47 7.88 -2.39 -0.02 1.45 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 3.64 6.31 -2.38 -0.02 3.62 16 33 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 34 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 36 H 0.00 -0.19 7.22 -2.39 -0.02 -0.20 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.12 1.95 7.80 -2.39 -0.02 1.93 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -72.65 341.52 4.40 -68.25 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.98 Total: 9.94 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 7.22 Total: 5.43 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -5.82 Total: -128.37 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.65 4.40 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.737 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds