Wall clock time and date at job start Mon Mar 30 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50708 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.30287 * 126.34554 * 269.68613 * 4 3 2 6 6 N 1.28531 * 110.05121 * 179.82331 * 5 4 3 7 7 C 1.31213 * 109.85899 * 0.45688 * 6 5 4 8 8 N 1.38586 * 126.47416 * 179.68933 * 7 6 5 9 9 C 1.46900 * 110.99948 * 306.64248 * 8 7 6 10 10 C 1.46897 * 110.99562 * 70.59161 * 8 7 6 11 11 H 1.09007 * 109.47427 * 55.00278 * 10 8 7 12 12 C 1.53003 * 109.47471 * 294.99956 * 10 8 7 13 13 C 1.50707 * 109.47004 * 174.99835 * 10 8 7 14 14 H 1.07995 * 119.99769 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99947 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00093 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99819 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47128 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47104 * 119.99994 * 17 15 13 20 20 H 1.48495 * 109.47060 * 240.00218 * 17 15 13 21 21 N 1.36455 * 107.05338 * 359.72790 * 7 6 5 22 22 C 1.46503 * 127.13252 * 180.02562 * 21 7 6 23 23 C 1.52998 * 109.47013 * 270.88380 * 22 21 7 24 24 H 1.09006 * 109.46522 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46723 * 299.99312 * 1 2 3 26 26 H 1.08992 * 109.47322 * 59.99659 * 1 2 3 27 27 H 1.08993 * 109.47529 * 120.00848 * 2 1 3 28 28 H 1.09007 * 109.46792 * 240.00433 * 2 1 3 29 29 H 1.09002 * 109.47416 * 300.00184 * 3 2 1 30 30 H 1.08998 * 109.46857 * 60.00770 * 3 2 1 31 31 H 1.08993 * 109.47461 * 54.87224 * 9 8 7 32 32 H 1.09003 * 109.46890 * 174.87887 * 9 8 7 33 33 H 1.08999 * 109.46916 * 294.87486 * 9 8 7 34 34 H 1.08994 * 109.47051 * 300.00288 * 12 10 8 35 35 H 1.09002 * 109.46746 * 60.00393 * 12 10 8 36 36 H 1.08997 * 109.47127 * 180.02562 * 12 10 8 37 37 H 0.96995 * 119.99486 * 179.97438 * 16 15 13 38 38 H 1.08990 * 109.47807 * 30.88594 * 22 21 7 39 39 H 1.09007 * 109.46899 * 150.89153 * 22 21 7 40 40 H 1.09002 * 109.47443 * 175.54988 * 23 22 21 41 41 H 1.09003 * 109.47279 * 295.55030 * 23 22 21 42 42 H 1.09004 * 109.47049 * 55.54994 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3197 1.4481 1.0484 6 7 5.5532 1.4424 0.6873 7 6 5.6342 1.4427 -0.6223 8 7 6.7974 1.4436 -1.3757 9 6 7.6835 2.5445 -0.9748 10 6 7.4878 0.1505 -1.2796 11 1 6.8035 -0.6489 -1.5642 12 6 7.9595 -0.0702 0.1591 13 6 8.6776 0.1463 -2.2046 14 1 8.8989 1.0172 -2.8035 15 6 9.4841 -0.9691 -2.2853 16 7 9.2148 -2.0295 -1.5555 17 14 10.9593 -0.9740 -3.4313 18 1 11.0432 0.3306 -4.1357 19 1 12.1984 -1.1904 -2.6422 20 1 10.8092 -2.0657 -4.4266 21 7 4.3569 1.4428 -1.1023 22 6 3.9399 1.4425 -2.5067 23 6 3.8163 2.8848 -3.0023 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 7.8749 2.4851 0.0966 32 1 8.6259 2.4683 -1.5171 33 1 7.2070 3.4971 -1.2064 34 1 8.6437 0.7291 0.4437 35 1 7.0989 -0.0672 0.8281 36 1 8.4721 -1.0294 0.2303 37 1 9.7820 -2.8143 -1.6126 38 1 4.6817 0.9148 -3.1060 39 1 2.9756 0.9427 -2.5993 40 1 3.5833 2.8844 -4.0671 41 1 3.0194 3.3896 -2.4561 42 1 4.7582 3.4078 -2.8366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340124390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:18 Heat of formation + Delta-G solvation = 76.738311 kcal Electronic energy + Delta-G solvation = -21335.227955 eV Core-core repulsion = 18351.863311 eV Total energy + Delta-G solvation = -2983.364644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.45979 -37.24801 -35.62658 -34.81511 -32.80493 -30.36433 -30.00948 -28.64445 -26.71242 -25.23544 -25.10784 -23.82679 -21.97635 -21.35502 -20.18594 -19.37424 -16.57242 -16.37947 -15.76051 -15.51565 -14.99502 -14.73222 -14.53076 -13.98995 -13.65600 -13.25327 -13.20702 -12.77101 -12.44813 -12.32237 -12.15473 -11.78658 -11.48001 -11.39055 -11.27842 -11.23588 -11.02623 -10.94337 -10.83679 -10.76797 -10.51143 -10.14585 -10.12352 -9.84806 -9.64375 -8.88952 -8.47032 -8.37465 -7.66533 -6.07859 -4.14130 2.24543 2.76118 3.26068 3.33970 3.36662 3.39862 4.33402 4.49706 4.67639 4.75205 4.84280 4.92465 5.07605 5.21500 5.24160 5.28789 5.35062 5.56498 5.59821 5.65763 5.72779 5.83783 5.90495 5.91013 6.07569 6.10573 6.18746 6.31578 6.41574 6.56076 6.64429 6.86404 7.08188 7.11446 7.18411 7.55409 7.66177 7.76734 7.93607 8.26409 8.48382 8.89596 9.32174 9.50747 10.98940 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005144 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.995729 B = 5442.377797 C = 5545.881544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.024 4.024 4 C 0.157 3.843 5 N -0.295 5.295 6 N -0.316 5.316 7 C 0.376 3.624 8 N -0.470 5.470 9 C 0.046 3.954 10 C 0.224 3.776 11 H 0.035 0.965 12 C -0.172 4.172 13 C -0.507 4.507 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.468 5.468 22 C 0.109 3.891 23 C -0.162 4.162 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.261 0.739 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 6.678 -2.182 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.063 4.063 4 C -0.111 4.111 5 N -0.135 5.135 6 N -0.159 5.159 7 C 0.020 3.980 8 N -0.196 5.196 9 C -0.102 4.102 10 C 0.120 3.880 11 H 0.053 0.947 12 C -0.232 4.232 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.162 5.162 22 C -0.014 4.014 23 C -0.220 4.220 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.105 6.572 -1.222 15.609 hybrid contribution 0.728 -0.316 -1.259 1.488 sum -13.377 6.256 -2.481 14.975 Atomic orbital electron populations 1.21754 0.95183 1.01904 1.01838 1.21523 0.95824 0.95583 1.03056 1.19956 0.84188 0.98378 1.03814 1.24550 0.95938 1.07511 0.83058 1.73921 0.97063 1.18115 1.24444 1.74722 1.11089 1.21196 1.08943 1.22901 0.86235 1.00445 0.88395 1.59412 1.02260 1.08723 1.49204 1.22228 0.97024 0.90747 1.00155 1.19396 0.92833 0.81875 0.93945 0.94729 1.22429 0.99979 1.03265 0.97499 1.21049 1.09544 1.00624 1.23337 0.91546 1.24919 0.97861 0.95359 0.95888 1.69925 1.38852 1.04200 1.39719 0.86409 0.82276 0.78065 0.80468 1.19648 1.21002 1.21039 1.46405 1.06423 1.55318 1.08052 1.21753 1.01915 0.99019 0.78717 1.22085 1.02939 0.95514 1.01509 0.92484 0.92434 0.92739 0.91011 0.92023 0.90515 0.88752 0.94157 0.89160 0.93876 0.94967 0.94823 0.89602 0.92855 0.87746 0.89630 0.90646 0.92610 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 3 C -0.02 -0.27 5.41 -27.88 -0.15 -0.42 16 4 C 0.16 2.63 7.32 -154.03 -1.13 1.50 16 5 N -0.29 -6.09 12.18 32.99 0.40 -5.68 16 6 N -0.32 -7.19 9.73 30.32 0.29 -6.89 16 7 C 0.38 7.97 6.21 -318.87 -1.98 5.99 16 8 N -0.47 -10.33 4.77 -176.08 -0.84 -11.17 16 9 C 0.05 0.93 8.66 60.06 0.52 1.45 16 10 C 0.22 5.71 2.32 -68.86 -0.16 5.55 16 11 H 0.03 0.99 8.11 -51.93 -0.42 0.56 16 12 C -0.17 -4.47 8.20 37.16 0.30 -4.17 16 13 C -0.51 -13.45 7.81 -34.44 -0.27 -13.72 16 14 H 0.07 1.73 6.81 -52.49 -0.36 1.37 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.47 -8.11 2.81 -114.08 -0.32 -8.43 16 22 C 0.11 1.44 6.62 -4.04 -0.03 1.41 16 23 C -0.16 -1.79 10.24 37.16 0.38 -1.41 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.85 6.53 -51.93 -0.34 0.51 16 32 H 0.09 1.85 6.30 -51.93 -0.33 1.52 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.80 6.59 -51.93 -0.34 0.46 16 35 H 0.03 0.87 5.95 -51.93 -0.31 0.56 16 36 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.09 0.89 7.83 -51.93 -0.41 0.48 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -31.12 335.52 -9.21 -40.32 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.01 Total: 0.05 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.39 Total: -4.49 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.16 Total: -56.71 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.12 -9.21 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.061 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds