Wall clock time and date at job start Mon Mar 30 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50708 * 109.46814 * 180.02562 * 3 2 1 5 5 N 1.30287 * 126.34554 * 269.68613 * 4 3 2 6 6 N 1.28531 * 110.05121 * 179.82331 * 5 4 3 7 7 C 1.31213 * 109.85899 * 0.45688 * 6 5 4 8 8 N 1.38586 * 126.47416 * 179.68933 * 7 6 5 9 9 C 1.46900 * 110.99948 * 306.64248 * 8 7 6 10 10 C 1.46897 * 110.99562 * 70.59161 * 8 7 6 11 11 H 1.09007 * 109.47427 * 55.00278 * 10 8 7 12 12 C 1.53003 * 109.47471 * 294.99956 * 10 8 7 13 13 C 1.50707 * 109.47004 * 174.99835 * 10 8 7 14 14 H 1.07995 * 119.99769 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99947 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00093 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99819 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47128 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47104 * 119.99994 * 17 15 13 20 20 H 1.48495 * 109.47060 * 240.00218 * 17 15 13 21 21 N 1.36455 * 107.05338 * 359.72790 * 7 6 5 22 22 C 1.46503 * 127.13252 * 180.02562 * 21 7 6 23 23 C 1.52998 * 109.47013 * 270.88380 * 22 21 7 24 24 H 1.09006 * 109.46522 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46723 * 299.99312 * 1 2 3 26 26 H 1.08992 * 109.47322 * 59.99659 * 1 2 3 27 27 H 1.08993 * 109.47529 * 120.00848 * 2 1 3 28 28 H 1.09007 * 109.46792 * 240.00433 * 2 1 3 29 29 H 1.09002 * 109.47416 * 300.00184 * 3 2 1 30 30 H 1.08998 * 109.46857 * 60.00770 * 3 2 1 31 31 H 1.08993 * 109.47461 * 54.87224 * 9 8 7 32 32 H 1.09003 * 109.46890 * 174.87887 * 9 8 7 33 33 H 1.08999 * 109.46916 * 294.87486 * 9 8 7 34 34 H 1.08994 * 109.47051 * 300.00288 * 12 10 8 35 35 H 1.09002 * 109.46746 * 60.00393 * 12 10 8 36 36 H 1.08997 * 109.47127 * 180.02562 * 12 10 8 37 37 H 0.96995 * 119.99486 * 179.97438 * 16 15 13 38 38 H 1.08990 * 109.47807 * 30.88594 * 22 21 7 39 39 H 1.09007 * 109.46899 * 150.89153 * 22 21 7 40 40 H 1.09002 * 109.47443 * 175.54988 * 23 22 21 41 41 H 1.09003 * 109.47279 * 295.55030 * 23 22 21 42 42 H 1.09004 * 109.47049 * 55.54994 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3197 1.4481 1.0484 6 7 5.5532 1.4424 0.6873 7 6 5.6342 1.4427 -0.6223 8 7 6.7974 1.4436 -1.3757 9 6 7.6835 2.5445 -0.9748 10 6 7.4878 0.1505 -1.2796 11 1 6.8035 -0.6489 -1.5642 12 6 7.9595 -0.0702 0.1591 13 6 8.6776 0.1463 -2.2046 14 1 8.8989 1.0172 -2.8035 15 6 9.4841 -0.9691 -2.2853 16 7 9.2148 -2.0295 -1.5555 17 14 10.9593 -0.9740 -3.4313 18 1 11.0432 0.3306 -4.1357 19 1 12.1984 -1.1904 -2.6422 20 1 10.8092 -2.0657 -4.4266 21 7 4.3569 1.4428 -1.1023 22 6 3.9399 1.4425 -2.5067 23 6 3.8163 2.8848 -3.0023 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 7.8749 2.4851 0.0966 32 1 8.6259 2.4683 -1.5171 33 1 7.2070 3.4971 -1.2064 34 1 8.6437 0.7291 0.4437 35 1 7.0989 -0.0672 0.8281 36 1 8.4721 -1.0294 0.2303 37 1 9.7820 -2.8143 -1.6126 38 1 4.6817 0.9148 -3.1060 39 1 2.9756 0.9427 -2.5993 40 1 3.5833 2.8844 -4.0671 41 1 3.0194 3.3896 -2.4561 42 1 4.7582 3.4078 -2.8366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340124390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:18 Heat of formation + Delta-G solvation = 59.814794 kcal Electronic energy + Delta-G solvation = -21335.961814 eV Core-core repulsion = 18351.863311 eV Total energy + Delta-G solvation = -2984.098502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.94124 -39.03646 -36.82256 -35.86093 -34.77000 -31.50747 -31.48714 -30.44803 -27.96943 -27.19053 -26.84877 -24.96295 -23.17102 -22.85312 -21.44317 -21.02514 -18.39579 -17.92765 -17.37001 -17.06542 -16.44316 -16.03387 -15.72228 -15.38438 -14.97641 -14.91036 -14.26719 -14.15018 -13.91484 -13.50275 -13.24347 -13.13010 -13.05196 -12.82009 -12.73884 -12.70740 -12.58649 -12.29935 -12.16779 -12.16166 -12.06818 -12.00322 -11.70357 -11.41100 -11.05093 -10.89339 -10.54996 -9.94398 -9.44323 -8.15270 -6.29121 0.80507 1.40473 1.44247 1.46547 1.58169 1.84890 2.41747 3.06710 3.15636 3.39405 3.69738 3.94653 4.06386 4.12596 4.17037 4.34143 4.37233 4.44108 4.56375 4.62928 4.69980 4.71173 4.78537 4.83180 4.93341 4.96124 5.00135 5.05193 5.09019 5.17641 5.21779 5.23767 5.31055 5.41616 5.45862 5.60360 5.65431 5.87183 6.02417 6.19366 6.64642 6.81018 7.40220 7.80085 8.92026 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005144 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.995729 B = 5442.377797 C = 5545.881544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.022 4.022 4 C 0.180 3.820 5 N -0.337 5.337 6 N -0.351 5.351 7 C 0.350 3.650 8 N -0.463 5.463 9 C 0.052 3.948 10 C 0.236 3.764 11 H -0.003 1.003 12 C -0.154 4.154 13 C -0.516 4.516 14 H 0.072 0.928 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.283 1.283 20 H -0.281 1.281 21 N -0.464 5.464 22 C 0.100 3.900 23 C -0.153 4.153 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.025 0.975 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 7.943 -3.945 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.061 4.061 4 C -0.088 4.088 5 N -0.177 5.177 6 N -0.194 5.194 7 C -0.007 4.007 8 N -0.189 5.189 9 C -0.096 4.096 10 C 0.130 3.870 11 H 0.015 0.985 12 C -0.213 4.213 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.209 1.209 20 H -0.207 1.207 21 N -0.157 5.157 22 C -0.021 4.021 23 C -0.211 4.211 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.905 7.861 -2.999 17.993 hybrid contribution 1.144 -0.715 -0.680 1.511 sum -14.761 7.146 -3.679 16.807 Atomic orbital electron populations 1.21708 0.92546 1.02571 1.03149 1.21484 0.97979 0.94560 1.01659 1.20300 0.80178 0.99465 1.06190 1.25589 0.97817 1.03530 0.81880 1.73837 0.96826 1.20790 1.26295 1.74572 1.12705 1.22029 1.10107 1.22838 0.87122 1.02385 0.88371 1.59291 1.02612 1.07402 1.49581 1.22209 0.96965 0.91352 0.99050 1.19044 0.92086 0.82790 0.93113 0.98530 1.22221 0.99283 1.01715 0.98126 1.21291 1.09817 1.00893 1.23455 0.90985 1.25775 1.00661 0.94872 0.97306 1.70068 1.40049 1.04852 1.41178 0.85331 0.78403 0.78498 0.78349 1.18357 1.20929 1.20699 1.46669 1.05075 1.54181 1.09812 1.22134 1.02846 1.01007 0.76154 1.22045 1.02220 0.93362 1.03475 0.92223 0.91687 0.90851 0.93437 0.92575 0.86964 0.87482 0.95645 0.89494 0.91301 0.94914 0.95492 0.92096 0.92821 0.89769 0.86058 0.87788 0.90962 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -2.25 5.92 30.60 0.18 -2.07 16 3 C -0.02 -0.43 5.41 29.85 0.16 -0.27 16 4 C 0.18 5.84 7.32 137.65 1.01 6.85 16 5 N -0.34 -14.09 12.18 -49.54 -0.60 -14.69 16 6 N -0.35 -16.40 9.73 -58.00 -0.56 -16.96 16 7 C 0.35 15.10 6.21 260.11 1.61 16.71 16 8 N -0.46 -20.78 4.77 -710.98 -3.39 -24.17 16 9 C 0.05 2.11 8.66 127.69 1.11 3.22 16 10 C 0.24 12.44 2.32 44.17 0.10 12.54 16 11 H 0.00 -0.19 8.11 -2.38 -0.02 -0.21 16 12 C -0.15 -8.35 8.20 71.98 0.59 -7.76 16 13 C -0.52 -27.76 7.81 25.60 0.20 -27.56 16 14 H 0.07 3.73 6.81 -2.91 -0.02 3.71 16 15 C 0.01 0.70 5.30 84.65 0.45 1.15 16 16 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 17 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 N -0.46 -15.75 2.81 -514.85 -1.45 -17.19 16 22 C 0.10 2.44 6.62 86.38 0.57 3.01 16 23 C -0.15 -2.91 10.24 71.98 0.74 -2.17 16 24 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.11 1.49 7.89 -2.39 -0.02 1.47 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.02 1.09 6.53 -2.39 -0.02 1.08 16 32 H 0.09 3.57 6.30 -2.39 -0.02 3.55 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.03 1.70 6.59 -2.39 -0.02 1.68 16 35 H 0.03 1.45 5.95 -2.39 -0.01 1.44 16 36 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.12 2.08 7.83 -2.38 -0.02 2.06 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -70.37 335.52 4.68 -65.69 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.98 Total: 13.35 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.43 Total: 2.58 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.77 Total: -126.27 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.37 4.68 -65.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340124390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.501 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds