Wall clock time and date at job start Mon Mar 30 2020 00:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47323 * 2 1 4 4 C 1.46900 * 111.00109 * 66.04502 * 3 2 1 5 5 C 1.53006 * 109.47142 * 199.37674 * 4 3 2 6 6 C 1.38582 * 111.00198 * 189.99840 * 3 2 1 7 7 N 1.31217 * 126.47160 * 294.98054 * 6 3 2 8 8 N 1.28535 * 109.85725 * 179.97438 * 7 6 3 9 9 C 1.30291 * 110.05292 * 0.02562 * 8 7 6 10 10 C 1.50709 * 126.34437 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46878 * 90.02340 * 10 9 8 12 12 C 1.53000 * 109.46861 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47052 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99929 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47032 * 60.00373 * 17 15 13 19 19 H 1.48492 * 109.46968 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 300.00228 * 17 15 13 21 21 N 1.36454 * 126.47441 * 115.28809 * 6 3 2 22 22 C 1.46507 * 127.13504 * 0.02562 * 21 6 3 23 23 H 1.09006 * 109.46521 * 60.00233 * 1 2 3 24 24 H 1.08998 * 109.47582 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47199 * 300.00256 * 1 2 3 26 26 H 1.09004 * 109.46871 * 239.99689 * 2 1 3 27 27 H 1.09003 * 109.46906 * 120.00108 * 2 1 3 28 28 H 1.09007 * 109.46797 * 319.37146 * 4 3 2 29 29 H 1.08995 * 109.47305 * 79.37085 * 4 3 2 30 30 H 1.08999 * 109.46909 * 304.82380 * 5 4 3 31 31 H 1.09002 * 109.47347 * 64.82403 * 5 4 3 32 32 H 1.08994 * 109.47247 * 184.82636 * 5 4 3 33 33 H 1.08997 * 109.47069 * 330.02619 * 10 9 8 34 34 H 1.08993 * 109.46992 * 210.02287 * 10 9 8 35 35 H 1.09003 * 109.47261 * 299.99769 * 11 10 9 36 36 H 1.08993 * 109.47290 * 59.99812 * 11 10 9 37 37 H 1.09003 * 109.47216 * 299.99516 * 12 11 10 38 38 H 1.08993 * 109.47559 * 59.99687 * 12 11 10 39 39 H 0.96995 * 119.99570 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46959 * 265.09536 * 22 21 6 41 41 H 1.08991 * 109.46972 * 25.09967 * 22 21 6 42 42 H 1.09000 * 109.46615 * 145.10134 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.7468 3.5812 1.0484 6 6 3.3865 1.4284 -0.2246 7 7 4.3220 0.9529 0.5632 8 7 5.4789 1.1653 0.0449 9 6 5.3511 1.7842 -1.0945 10 6 6.4701 2.2119 -2.0090 11 6 6.7767 1.0875 -3.0002 12 6 7.9132 1.5215 -3.9281 13 6 8.2156 0.4138 -4.9041 14 1 7.6538 -0.5078 -4.8660 15 6 9.2097 0.5768 -5.8456 16 7 9.8942 1.6989 -5.8916 17 14 9.5850 -0.7966 -7.0549 18 1 8.3729 -1.0919 -7.8604 19 1 10.6879 -0.3753 -7.9555 20 1 9.9930 -2.0146 -6.3097 21 7 4.0141 1.9790 -1.3040 22 6 3.3854 2.6392 -2.4509 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.6575 1.7907 1.5470 29 1 2.3690 1.7703 2.0354 30 1 2.7346 3.8475 0.6724 31 1 0.9887 3.8893 0.3283 32 1 1.5716 4.0858 1.9985 33 1 7.3600 2.4278 -1.4178 34 1 6.1711 3.1064 -2.5553 35 1 7.0758 0.1930 -2.4538 36 1 5.8869 0.8716 -3.5913 37 1 7.6145 2.4162 -4.4746 38 1 8.8029 1.7372 -3.3367 39 1 10.5932 1.8137 -6.5542 40 1 3.2567 1.9190 -3.2590 41 1 2.4125 3.0318 -2.1557 42 1 4.0195 3.4577 -2.7914 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350634365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:26 Heat of formation + Delta-G solvation = 66.959624 kcal Electronic energy + Delta-G solvation = -20380.797038 eV Core-core repulsion = 17397.008358 eV Total energy + Delta-G solvation = -2983.788679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.83173 -38.25589 -35.21787 -34.41557 -32.50098 -32.10647 -30.66786 -28.85269 -27.31440 -26.72070 -23.73487 -23.61554 -22.77112 -20.84114 -20.29017 -19.95578 -17.34771 -16.63689 -16.30906 -16.02145 -15.23689 -14.92957 -14.53255 -14.31065 -14.06071 -13.88355 -13.36539 -12.87756 -12.68157 -12.61836 -12.39178 -12.15750 -12.00272 -11.87758 -11.59545 -11.54421 -11.33985 -11.01639 -10.84836 -10.80570 -10.59063 -10.43818 -9.98495 -9.76659 -9.50181 -9.18394 -8.95538 -8.64894 -8.36190 -6.01607 -4.03930 1.85369 2.31813 3.00623 3.32960 3.37387 3.40229 3.57892 4.44468 4.52540 4.65713 4.74923 4.83275 4.89969 5.01159 5.12066 5.15767 5.22172 5.28051 5.30263 5.34521 5.42168 5.44915 5.63223 5.66203 5.75389 5.85077 5.88749 5.95259 5.96400 6.07003 6.16611 6.52094 6.62024 6.66574 6.75755 7.03267 7.27346 7.63634 7.77084 7.97583 8.40066 8.91732 9.02374 9.60223 11.09666 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.031498 B = 0.003589 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.720074 B = 7798.774325 C = 8120.399520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 N -0.464 5.464 4 C 0.054 3.946 5 C -0.146 4.146 6 C 0.329 3.671 7 N -0.313 5.313 8 N -0.293 5.293 9 C 0.205 3.795 10 C -0.036 4.036 11 C -0.102 4.102 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.466 5.466 22 C 0.080 3.920 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.017 0.983 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.041 3.309 10.715 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 N -0.190 5.190 4 C -0.073 4.073 5 C -0.204 4.204 6 C -0.028 4.028 7 N -0.158 5.158 8 N -0.133 5.133 9 C -0.062 4.062 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.159 5.159 22 C -0.063 4.063 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.509 2.991 11.411 22.798 hybrid contribution -0.052 -0.480 -1.331 1.416 sum -19.561 2.511 10.080 22.148 Atomic orbital electron populations 1.21849 0.93917 1.02151 1.02625 1.22118 0.95952 0.86186 1.02314 1.58736 1.05198 1.17952 1.37148 1.22266 1.01692 0.94593 0.88722 1.21750 1.02119 0.94601 1.01911 1.22180 0.91441 1.01044 0.88090 1.74496 0.95391 1.20889 1.24983 1.74058 1.16098 1.16351 1.06771 1.25354 0.83684 1.00403 0.96799 1.20370 0.92276 1.00090 0.94821 1.21644 1.00477 0.96028 0.95938 1.19095 0.92244 0.96701 0.93353 1.21186 1.18135 1.01303 1.15357 0.92794 1.25008 0.96056 0.95667 0.97624 1.69947 1.22922 1.24958 1.35641 0.86660 0.77879 0.82467 0.81025 1.20290 1.21258 1.20188 1.46232 1.07152 1.43915 1.18566 1.22030 0.99451 0.98365 0.86496 0.91695 0.91596 0.92260 0.90603 0.92978 0.89384 0.92591 0.93105 0.91966 0.91801 0.88458 0.90368 0.92472 0.93581 0.96486 0.96146 0.92911 0.90048 0.88876 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.88 37.16 0.37 -0.67 16 2 C 0.06 0.62 5.61 -3.83 -0.02 0.60 16 3 N -0.46 -5.27 4.45 -174.50 -0.78 -6.05 16 4 C 0.05 0.53 5.55 -3.82 -0.02 0.50 16 5 C -0.15 -1.30 10.07 37.16 0.37 -0.93 16 6 C 0.33 4.88 5.67 -318.87 -1.81 3.07 16 7 N -0.31 -5.64 11.87 30.32 0.36 -5.28 16 8 N -0.29 -5.67 12.18 32.99 0.40 -5.27 16 9 C 0.20 3.51 7.32 -154.02 -1.13 2.38 16 10 C -0.04 -0.60 5.59 -27.88 -0.16 -0.76 16 11 C -0.10 -2.08 5.14 -26.73 -0.14 -2.22 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.47 -6.77 3.21 -121.45 -0.39 -7.16 16 22 C 0.08 0.84 11.01 59.85 0.66 1.50 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.37 6.25 -51.93 -0.32 0.04 16 26 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 27 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 28 H 0.09 0.65 5.88 -51.92 -0.31 0.34 16 29 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 30 H 0.05 0.57 7.59 -51.93 -0.39 0.17 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.08 1.16 7.37 -51.93 -0.38 0.78 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 42 H 0.09 0.84 7.41 -51.93 -0.38 0.45 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -32.81 345.19 -9.13 -41.94 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -7.22 Total: -4.59 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.42 Total: -9.51 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.33 Total: -49.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.81 -9.13 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350634365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.900 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds