Wall clock time and date at job start Mon Mar 30 2020 00:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47323 * 2 1 4 4 C 1.46900 * 111.00109 * 66.04502 * 3 2 1 5 5 C 1.53006 * 109.47142 * 199.37674 * 4 3 2 6 6 C 1.38582 * 111.00198 * 189.99840 * 3 2 1 7 7 N 1.31217 * 126.47160 * 294.98054 * 6 3 2 8 8 N 1.28535 * 109.85725 * 179.97438 * 7 6 3 9 9 C 1.30291 * 110.05292 * 0.02562 * 8 7 6 10 10 C 1.50709 * 126.34437 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46878 * 90.02340 * 10 9 8 12 12 C 1.53000 * 109.46861 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47052 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99929 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47032 * 60.00373 * 17 15 13 19 19 H 1.48492 * 109.46968 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 300.00228 * 17 15 13 21 21 N 1.36454 * 126.47441 * 115.28809 * 6 3 2 22 22 C 1.46507 * 127.13504 * 0.02562 * 21 6 3 23 23 H 1.09006 * 109.46521 * 60.00233 * 1 2 3 24 24 H 1.08998 * 109.47582 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47199 * 300.00256 * 1 2 3 26 26 H 1.09004 * 109.46871 * 239.99689 * 2 1 3 27 27 H 1.09003 * 109.46906 * 120.00108 * 2 1 3 28 28 H 1.09007 * 109.46797 * 319.37146 * 4 3 2 29 29 H 1.08995 * 109.47305 * 79.37085 * 4 3 2 30 30 H 1.08999 * 109.46909 * 304.82380 * 5 4 3 31 31 H 1.09002 * 109.47347 * 64.82403 * 5 4 3 32 32 H 1.08994 * 109.47247 * 184.82636 * 5 4 3 33 33 H 1.08997 * 109.47069 * 330.02619 * 10 9 8 34 34 H 1.08993 * 109.46992 * 210.02287 * 10 9 8 35 35 H 1.09003 * 109.47261 * 299.99769 * 11 10 9 36 36 H 1.08993 * 109.47290 * 59.99812 * 11 10 9 37 37 H 1.09003 * 109.47216 * 299.99516 * 12 11 10 38 38 H 1.08993 * 109.47559 * 59.99687 * 12 11 10 39 39 H 0.96995 * 119.99570 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46959 * 265.09536 * 22 21 6 41 41 H 1.08991 * 109.46972 * 25.09967 * 22 21 6 42 42 H 1.09000 * 109.46615 * 145.10134 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 1.7468 3.5812 1.0484 6 6 3.3865 1.4284 -0.2246 7 7 4.3220 0.9529 0.5632 8 7 5.4789 1.1653 0.0449 9 6 5.3511 1.7842 -1.0945 10 6 6.4701 2.2119 -2.0090 11 6 6.7767 1.0875 -3.0002 12 6 7.9132 1.5215 -3.9281 13 6 8.2156 0.4138 -4.9041 14 1 7.6538 -0.5078 -4.8660 15 6 9.2097 0.5768 -5.8456 16 7 9.8942 1.6989 -5.8916 17 14 9.5850 -0.7966 -7.0549 18 1 8.3729 -1.0919 -7.8604 19 1 10.6879 -0.3753 -7.9555 20 1 9.9930 -2.0146 -6.3097 21 7 4.0141 1.9790 -1.3040 22 6 3.3854 2.6392 -2.4509 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.6575 1.7907 1.5470 29 1 2.3690 1.7703 2.0354 30 1 2.7346 3.8475 0.6724 31 1 0.9887 3.8893 0.3283 32 1 1.5716 4.0858 1.9985 33 1 7.3600 2.4278 -1.4178 34 1 6.1711 3.1064 -2.5553 35 1 7.0758 0.1930 -2.4538 36 1 5.8869 0.8716 -3.5913 37 1 7.6145 2.4162 -4.4746 38 1 8.8029 1.7372 -3.3367 39 1 10.5932 1.8137 -6.5542 40 1 3.2567 1.9190 -3.2590 41 1 2.4125 3.0318 -2.1557 42 1 4.0195 3.4577 -2.7914 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350634365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:26 Heat of formation + Delta-G solvation = 48.622909 kcal Electronic energy + Delta-G solvation = -20381.592177 eV Core-core repulsion = 17397.008358 eV Total energy + Delta-G solvation = -2984.583819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.06593 -39.16652 -36.76012 -35.80746 -34.38785 -32.84378 -31.94096 -30.13761 -28.34942 -28.21505 -25.57932 -24.41900 -23.67233 -22.49060 -21.59947 -21.12768 -18.55694 -18.23110 -17.70173 -17.14955 -16.56134 -16.16246 -15.84829 -15.65716 -15.31769 -14.92233 -14.41157 -14.29063 -13.88293 -13.66772 -13.35432 -13.30255 -13.22652 -12.98280 -12.72685 -12.63644 -12.60243 -12.57327 -12.43953 -12.31531 -11.74312 -11.72109 -11.52075 -11.42158 -11.26812 -11.08681 -10.53502 -10.06875 -9.89177 -8.19267 -6.29480 0.65983 1.23737 1.40535 1.43037 1.50911 1.69451 2.41694 2.64506 3.14210 3.33555 3.71879 3.81542 3.94357 4.07617 4.18163 4.21562 4.29956 4.37811 4.38913 4.46802 4.48225 4.57429 4.61885 4.67190 4.71916 4.89553 4.97969 5.03559 5.04228 5.05786 5.08862 5.17358 5.22636 5.32737 5.50898 5.55990 5.69105 5.74304 5.85891 6.19214 6.26190 6.86119 7.39238 7.63807 8.92018 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.031498 B = 0.003589 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.720074 B = 7798.774325 C = 8120.399520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 N -0.456 5.456 4 C 0.052 3.948 5 C -0.140 4.140 6 C 0.344 3.656 7 N -0.350 5.350 8 N -0.330 5.330 9 C 0.196 3.804 10 C -0.023 4.023 11 C -0.084 4.084 12 C 0.028 3.972 13 C -0.546 4.546 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.272 1.272 21 N -0.463 5.463 22 C 0.071 3.929 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.119 0.881 29 H 0.034 0.966 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.007 0.993 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.430 3.327 10.159 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 N -0.183 5.183 4 C -0.074 4.074 5 C -0.198 4.198 6 C -0.013 4.013 7 N -0.194 5.194 8 N -0.170 5.170 9 C -0.072 4.072 10 C -0.063 4.063 11 C -0.123 4.123 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.197 1.197 21 N -0.155 5.155 22 C -0.070 4.070 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.137 0.863 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.133 0.867 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.920 3.013 10.854 24.645 hybrid contribution 0.620 -0.467 -1.124 1.366 sum -21.300 2.545 9.730 23.555 Atomic orbital electron populations 1.21799 0.90928 1.03291 1.03471 1.22205 0.98249 0.85232 1.01083 1.59067 1.02635 1.18704 1.37914 1.22404 1.02693 0.95053 0.87265 1.21728 1.01021 0.93952 1.03110 1.22589 0.92482 0.98903 0.87323 1.74414 0.95681 1.22854 1.26456 1.73951 1.17398 1.17558 1.08119 1.25153 0.84786 1.00795 0.96508 1.20152 0.92487 0.99529 0.94121 1.21334 0.98829 0.96457 0.95662 1.18975 0.92916 0.95696 0.93335 1.21630 1.18456 1.02069 1.16212 0.92781 1.25889 0.95832 0.98156 0.99545 1.70063 1.23461 1.26884 1.36533 0.85584 0.78086 0.79246 0.78647 1.19070 1.20647 1.19704 1.46417 1.06301 1.43484 1.19300 1.22371 1.00554 0.98698 0.85352 0.91213 0.90383 0.90918 0.92033 0.94145 0.86334 0.94773 0.95725 0.90366 0.90276 0.88892 0.87888 0.94222 0.92868 0.97450 0.98524 0.92695 0.89469 0.86703 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.88 71.98 0.71 -0.83 16 2 C 0.06 1.12 5.61 86.30 0.48 1.61 16 3 N -0.46 -9.66 4.45 -706.01 -3.14 -12.80 16 4 C 0.05 0.92 5.55 86.31 0.48 1.39 16 5 C -0.14 -2.20 10.07 71.98 0.72 -1.48 16 6 C 0.34 10.04 5.67 260.11 1.47 11.52 16 7 N -0.35 -12.82 11.87 -58.00 -0.69 -13.51 16 8 N -0.33 -13.09 12.18 -49.54 -0.60 -13.70 16 9 C 0.20 6.72 7.32 137.65 1.01 7.73 16 10 C -0.02 -0.78 5.59 29.85 0.17 -0.62 16 11 C -0.08 -3.45 5.14 30.59 0.16 -3.29 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 14 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 15 C 0.00 0.22 5.46 84.65 0.46 0.69 16 16 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 17 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 N -0.46 -13.03 3.21 -538.17 -1.73 -14.75 16 22 C 0.07 1.34 11.01 127.77 1.41 2.75 16 23 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.63 6.25 -2.39 -0.01 0.62 16 26 H 0.06 1.34 8.05 -2.39 -0.02 1.32 16 27 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 28 H 0.12 1.37 5.88 -2.38 -0.01 1.35 16 29 H 0.03 0.77 7.70 -2.39 -0.02 0.75 16 30 H 0.02 0.51 7.59 -2.39 -0.02 0.49 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.10 2.93 7.37 -2.39 -0.02 2.91 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 42 H 0.10 1.68 7.41 -2.39 -0.02 1.66 16 Total: -1.00 -71.90 345.19 4.58 -67.32 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.97 Total: 6.35 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 7.46 Total: -9.66 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -5.87 Total: -110.19 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.90 4.58 -67.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350634365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.939 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds