Wall clock time and date at job start Mon Mar 30 2020 00:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47468 * 2 1 4 4 C 1.46894 * 111.00504 * 76.05845 * 3 2 1 5 5 C 1.52998 * 109.47207 * 65.02706 * 4 3 2 6 6 C 1.38579 * 111.00302 * 200.01632 * 3 2 1 7 7 N 1.31215 * 126.47167 * 359.68454 * 6 3 2 8 8 N 1.28524 * 109.86303 * 179.82202 * 7 6 3 9 9 C 1.30296 * 110.05037 * 0.45482 * 8 7 6 10 10 C 1.50704 * 126.34447 * 179.69498 * 9 8 7 11 11 H 1.09006 * 109.47008 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46741 * 300.03757 * 10 9 8 13 13 C 1.52992 * 109.47692 * 60.03765 * 10 9 8 14 14 C 1.50691 * 109.47511 * 175.00055 * 13 10 9 15 15 H 1.08001 * 120.00097 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00456 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99706 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00202 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47038 * 90.00094 * 18 16 14 20 20 H 1.48502 * 109.46896 * 210.00120 * 18 16 14 21 21 H 1.48495 * 109.47272 * 330.00025 * 18 16 14 22 22 N 1.36453 * 126.47538 * 179.97438 * 6 3 2 23 23 C 1.46498 * 127.13673 * 0.02562 * 22 6 3 24 24 H 1.09005 * 109.46791 * 300.95177 * 1 2 3 25 25 H 1.09001 * 109.46577 * 60.94771 * 1 2 3 26 26 H 1.08990 * 109.47264 * 180.94953 * 1 2 3 27 27 H 1.08998 * 109.47410 * 239.99397 * 2 1 3 28 28 H 1.09001 * 109.47080 * 119.99951 * 2 1 3 29 29 H 1.09001 * 109.47806 * 185.02677 * 4 3 2 30 30 H 1.08999 * 109.47377 * 305.02919 * 4 3 2 31 31 H 1.08997 * 109.47429 * 53.67851 * 5 4 3 32 32 H 1.08999 * 109.47708 * 173.68745 * 5 4 3 33 33 H 1.09001 * 109.46849 * 293.68777 * 5 4 3 34 34 H 1.09003 * 109.47073 * 299.99624 * 12 10 9 35 35 H 1.08989 * 109.47436 * 60.00447 * 12 10 9 36 36 H 1.09008 * 109.46898 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47298 * 295.00561 * 13 10 9 38 38 H 1.09007 * 109.47125 * 54.99810 * 13 10 9 39 39 H 0.96994 * 120.00204 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47096 * 89.97916 * 23 22 6 41 41 H 1.08997 * 109.47402 * 209.97980 * 23 22 6 42 42 H 1.09002 * 109.47238 * 329.97871 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8838 1.9915 1.3309 5 6 2.7939 1.2605 2.3199 6 6 3.3313 1.4479 -0.4428 7 7 4.0781 0.4356 -0.8161 8 7 5.2396 0.8568 -1.1700 9 6 5.3055 2.1511 -1.0355 10 6 6.4982 3.0210 -1.3388 11 1 6.2520 4.0617 -1.1275 12 6 7.6792 2.5890 -0.4672 13 6 6.8735 2.8755 -2.8148 14 6 7.9864 3.8356 -3.1472 15 1 8.3858 4.4851 -2.3822 16 6 8.4941 3.8858 -4.4281 17 7 8.0067 3.0961 -5.3600 18 14 9.8731 5.0765 -4.8403 19 1 11.1829 4.4146 -4.6135 20 1 9.7650 5.4855 -6.2638 21 1 9.7677 6.2760 -3.9713 22 7 4.0921 2.5738 -0.5679 23 6 3.6920 3.9498 -0.2635 24 1 -0.3633 0.5286 0.8814 25 1 -0.3632 0.4991 -0.8984 26 1 -0.3633 -1.0274 0.0170 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1697 3.0422 1.2824 30 1 0.8486 1.9116 1.6626 31 1 3.8124 1.2434 1.9321 32 1 2.7789 1.7785 3.2789 33 1 2.4389 0.2386 2.4534 34 1 7.4119 2.6928 0.5844 35 1 7.9253 1.5485 -0.6787 36 1 8.5418 3.2185 -0.6863 37 1 7.2047 1.8549 -3.0066 38 1 6.0046 3.0979 -3.4343 39 1 8.3641 3.1311 -6.2611 40 1 3.9245 4.1739 0.7776 41 1 4.2335 4.6377 -0.9128 42 1 2.6205 4.0617 -0.4287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355703707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:30 Heat of formation + Delta-G solvation = 75.629459 kcal Electronic energy + Delta-G solvation = -21035.030080 eV Core-core repulsion = 18051.617353 eV Total energy + Delta-G solvation = -2983.412727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.61485 -38.41622 -35.31965 -34.46931 -32.23039 -31.64469 -30.34471 -27.88403 -27.22045 -26.88912 -24.48752 -23.67285 -22.44817 -21.60041 -20.10372 -18.94385 -17.00700 -16.57054 -16.49487 -15.88853 -15.39331 -14.62865 -14.53382 -13.98127 -13.50870 -13.46201 -13.24448 -13.15789 -12.85714 -12.49335 -12.36984 -12.13712 -11.87972 -11.75502 -11.42710 -11.18680 -11.02939 -10.92641 -10.89876 -10.71538 -10.46324 -10.25918 -9.92037 -9.78123 -9.70262 -9.23525 -9.09452 -8.35083 -7.84906 -5.98657 -4.02477 2.17406 2.54110 3.32391 3.34268 3.39000 3.40715 3.75878 4.45050 4.56273 4.73346 4.82981 4.92870 5.02238 5.08459 5.11116 5.16025 5.30077 5.36249 5.36836 5.38795 5.43586 5.56996 5.72283 5.77109 5.83634 5.89244 6.05811 6.08610 6.14309 6.26592 6.33474 6.69576 6.73836 6.85012 6.94624 7.07263 7.46470 7.65241 7.81104 8.01096 8.36719 9.03335 9.29397 9.60993 11.12416 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.004295 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.401772 B = 6517.316688 C = 6722.440790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 N -0.450 5.450 4 C 0.043 3.957 5 C -0.188 4.188 6 C 0.339 3.661 7 N -0.326 5.326 8 N -0.283 5.283 9 C 0.211 3.789 10 C -0.001 4.001 11 H 0.071 0.929 12 C -0.125 4.125 13 C 0.038 3.962 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.487 5.487 23 C 0.076 3.924 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.014 0.986 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 0.146 15.126 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 N -0.173 5.173 4 C -0.084 4.084 5 C -0.247 4.247 6 C -0.017 4.017 7 N -0.171 5.171 8 N -0.121 5.121 9 C -0.056 4.056 10 C -0.022 4.022 11 H 0.089 0.911 12 C -0.183 4.183 13 C 0.000 4.000 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 N -0.183 5.183 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.838 -1.057 14.305 19.931 hybrid contribution 0.612 1.671 0.399 1.824 sum -13.226 0.614 14.705 19.787 Atomic orbital electron populations 1.21798 0.94282 1.01901 1.02392 1.22110 0.95451 0.85577 1.03646 1.58918 1.11708 1.21708 1.24966 1.22451 1.01174 0.99106 0.85710 1.22408 1.00594 1.01566 1.00101 1.22422 0.90534 0.84060 1.04704 1.74536 0.99045 1.23104 1.20369 1.73985 1.11585 1.07652 1.18857 1.25551 0.87554 0.93336 0.99185 1.19967 0.86869 0.94110 1.01262 0.91062 1.21665 0.97825 1.02727 0.96053 1.19106 0.96405 0.98560 0.85925 1.21146 1.18594 1.20959 0.95245 0.92359 1.25005 0.96918 0.95842 0.96480 1.69984 1.42036 1.38266 1.02592 0.86607 0.82580 0.81314 0.77562 1.20594 1.21294 1.19904 1.46100 1.12230 1.07995 1.51931 1.22058 1.02524 0.79943 1.02212 0.92789 0.91789 0.91659 0.88805 0.92796 0.90209 0.88987 0.92423 0.91577 0.91788 0.95114 0.92075 0.90717 0.94978 0.96794 0.92923 0.90832 0.88588 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.04 37.16 0.37 -0.87 16 2 C 0.06 0.69 5.22 -3.83 -0.02 0.67 16 3 N -0.45 -5.80 4.70 -174.52 -0.82 -6.62 16 4 C 0.04 0.41 5.78 -3.83 -0.02 0.39 16 5 C -0.19 -1.90 9.35 37.16 0.35 -1.55 16 6 C 0.34 5.71 5.63 -318.88 -1.79 3.92 16 7 N -0.33 -6.63 10.94 30.31 0.33 -6.30 16 8 N -0.28 -6.37 12.18 32.99 0.40 -5.97 16 9 C 0.21 4.28 6.58 -154.01 -1.01 3.27 16 10 C 0.00 -0.02 2.70 -91.77 -0.25 -0.27 16 11 H 0.07 1.34 6.94 -51.93 -0.36 0.98 16 12 C -0.12 -2.38 8.98 37.16 0.33 -2.04 16 13 C 0.04 0.99 4.43 -27.89 -0.12 0.87 16 14 C -0.52 -14.23 8.41 -34.44 -0.29 -14.52 16 15 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 N -0.49 -8.11 3.21 -121.46 -0.39 -8.50 16 23 C 0.08 0.88 9.21 59.85 0.55 1.44 16 24 H 0.05 0.39 6.84 -51.93 -0.36 0.04 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 1.32 7.33 -51.93 -0.38 0.93 16 28 H 0.05 0.61 5.99 -51.93 -0.31 0.30 16 29 H 0.08 0.70 5.45 -51.93 -0.28 0.42 16 30 H 0.09 0.68 6.74 -51.93 -0.35 0.33 16 31 H 0.06 0.77 6.98 -51.93 -0.36 0.41 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 1.24 8.14 -51.94 -0.42 0.81 16 36 H 0.07 1.43 6.95 -51.92 -0.36 1.07 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 41 H 0.10 1.13 7.23 -51.93 -0.38 0.75 16 42 H 0.09 0.88 7.55 -51.93 -0.39 0.48 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -33.29 331.72 -8.51 -41.79 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.74 Total: -2.38 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.00 Total: -7.12 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.26 Total: -53.56 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.29 -8.51 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355703707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.424 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds