Wall clock time and date at job start Mon Mar 30 2020 00:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47468 * 2 1 4 4 C 1.46894 * 111.00504 * 76.05845 * 3 2 1 5 5 C 1.52998 * 109.47207 * 65.02706 * 4 3 2 6 6 C 1.38579 * 111.00302 * 200.01632 * 3 2 1 7 7 N 1.31215 * 126.47167 * 359.68454 * 6 3 2 8 8 N 1.28524 * 109.86303 * 179.82202 * 7 6 3 9 9 C 1.30296 * 110.05037 * 0.45482 * 8 7 6 10 10 C 1.50704 * 126.34447 * 179.69498 * 9 8 7 11 11 H 1.09006 * 109.47008 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46741 * 300.03757 * 10 9 8 13 13 C 1.52992 * 109.47692 * 60.03765 * 10 9 8 14 14 C 1.50691 * 109.47511 * 175.00055 * 13 10 9 15 15 H 1.08001 * 120.00097 * 359.97438 * 14 13 10 16 16 C 1.37884 * 120.00456 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99706 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00202 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47038 * 90.00094 * 18 16 14 20 20 H 1.48502 * 109.46896 * 210.00120 * 18 16 14 21 21 H 1.48495 * 109.47272 * 330.00025 * 18 16 14 22 22 N 1.36453 * 126.47538 * 179.97438 * 6 3 2 23 23 C 1.46498 * 127.13673 * 0.02562 * 22 6 3 24 24 H 1.09005 * 109.46791 * 300.95177 * 1 2 3 25 25 H 1.09001 * 109.46577 * 60.94771 * 1 2 3 26 26 H 1.08990 * 109.47264 * 180.94953 * 1 2 3 27 27 H 1.08998 * 109.47410 * 239.99397 * 2 1 3 28 28 H 1.09001 * 109.47080 * 119.99951 * 2 1 3 29 29 H 1.09001 * 109.47806 * 185.02677 * 4 3 2 30 30 H 1.08999 * 109.47377 * 305.02919 * 4 3 2 31 31 H 1.08997 * 109.47429 * 53.67851 * 5 4 3 32 32 H 1.08999 * 109.47708 * 173.68745 * 5 4 3 33 33 H 1.09001 * 109.46849 * 293.68777 * 5 4 3 34 34 H 1.09003 * 109.47073 * 299.99624 * 12 10 9 35 35 H 1.08989 * 109.47436 * 60.00447 * 12 10 9 36 36 H 1.09008 * 109.46898 * 180.02562 * 12 10 9 37 37 H 1.09003 * 109.47298 * 295.00561 * 13 10 9 38 38 H 1.09007 * 109.47125 * 54.99810 * 13 10 9 39 39 H 0.96994 * 120.00204 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47096 * 89.97916 * 23 22 6 41 41 H 1.08997 * 109.47402 * 209.97980 * 23 22 6 42 42 H 1.09002 * 109.47238 * 329.97871 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8838 1.9915 1.3309 5 6 2.7939 1.2605 2.3199 6 6 3.3313 1.4479 -0.4428 7 7 4.0781 0.4356 -0.8161 8 7 5.2396 0.8568 -1.1700 9 6 5.3055 2.1511 -1.0355 10 6 6.4982 3.0210 -1.3388 11 1 6.2520 4.0617 -1.1275 12 6 7.6792 2.5890 -0.4672 13 6 6.8735 2.8755 -2.8148 14 6 7.9864 3.8356 -3.1472 15 1 8.3858 4.4851 -2.3822 16 6 8.4941 3.8858 -4.4281 17 7 8.0067 3.0961 -5.3600 18 14 9.8731 5.0765 -4.8403 19 1 11.1829 4.4146 -4.6135 20 1 9.7650 5.4855 -6.2638 21 1 9.7677 6.2760 -3.9713 22 7 4.0921 2.5738 -0.5679 23 6 3.6920 3.9498 -0.2635 24 1 -0.3633 0.5286 0.8814 25 1 -0.3632 0.4991 -0.8984 26 1 -0.3633 -1.0274 0.0170 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.1697 3.0422 1.2824 30 1 0.8486 1.9116 1.6626 31 1 3.8124 1.2434 1.9321 32 1 2.7789 1.7785 3.2789 33 1 2.4389 0.2386 2.4534 34 1 7.4119 2.6928 0.5844 35 1 7.9253 1.5485 -0.6787 36 1 8.5418 3.2185 -0.6863 37 1 7.2047 1.8549 -3.0066 38 1 6.0046 3.0979 -3.4343 39 1 8.3641 3.1311 -6.2611 40 1 3.9245 4.1739 0.7776 41 1 4.2335 4.6377 -0.9128 42 1 2.6205 4.0617 -0.4287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355703707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:30 Heat of formation + Delta-G solvation = 55.085368 kcal Electronic energy + Delta-G solvation = -21035.920939 eV Core-core repulsion = 18051.617353 eV Total energy + Delta-G solvation = -2984.303586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.00676 -39.44823 -37.04227 -35.82666 -34.24872 -32.46113 -31.51347 -29.35871 -28.66433 -28.29850 -25.99970 -24.93649 -23.71517 -23.10080 -21.28141 -20.41227 -18.62886 -18.04624 -17.75047 -17.19956 -16.52030 -16.38930 -15.86230 -15.27419 -14.95117 -14.51063 -14.43198 -14.24669 -14.09531 -13.82438 -13.63414 -13.25353 -13.03538 -12.95787 -12.77284 -12.71447 -12.62386 -12.37320 -12.26631 -12.11550 -11.95002 -11.78779 -11.51391 -11.35479 -11.15225 -11.06864 -10.64781 -10.54292 -9.19410 -8.15653 -6.27921 0.84251 1.29916 1.44516 1.46349 1.56749 1.87849 2.44323 2.68332 3.18336 3.49198 3.71833 3.79509 3.89375 4.04461 4.14817 4.25180 4.28762 4.34738 4.38417 4.43737 4.50555 4.54597 4.60992 4.69184 4.75033 4.86184 4.96399 5.00759 5.10024 5.13010 5.16086 5.19421 5.34138 5.38767 5.46234 5.56211 5.70867 5.75920 5.84312 6.19704 6.24565 6.88334 7.41543 7.84031 8.96994 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.004295 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.401772 B = 6517.316688 C = 6722.440790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 N -0.448 5.448 4 C 0.040 3.960 5 C -0.182 4.182 6 C 0.359 3.641 7 N -0.368 5.368 8 N -0.329 5.329 9 C 0.195 3.805 10 C 0.010 3.990 11 H 0.097 0.903 12 C -0.116 4.116 13 C 0.050 3.950 14 C -0.529 4.529 15 H 0.078 0.922 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.253 1.253 22 N -0.484 5.484 23 C 0.065 3.935 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.019 0.981 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.074 0.926 37 H -0.013 1.013 38 H -0.023 1.023 39 H 0.261 0.739 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.153 2.510 17.627 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 N -0.172 5.172 4 C -0.085 4.085 5 C -0.241 4.241 6 C 0.002 3.998 7 N -0.213 5.213 8 N -0.167 5.167 9 C -0.074 4.074 10 C -0.011 4.011 11 H 0.115 0.885 12 C -0.174 4.174 13 C 0.012 3.988 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.177 1.177 22 N -0.179 5.179 23 C -0.076 4.076 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.039 0.961 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.006 0.994 38 H -0.005 1.005 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.081 1.331 16.846 22.649 hybrid contribution 0.836 0.894 -0.335 1.269 sum -14.244 2.225 16.511 21.920 Atomic orbital electron populations 1.21748 0.91297 1.03179 1.03098 1.22176 0.97672 0.84834 1.02303 1.59147 1.08607 1.22431 1.27024 1.22695 1.03063 0.99369 0.83415 1.22366 0.98311 1.02172 1.01247 1.22839 0.91277 0.83448 1.02262 1.74418 0.99164 1.24901 1.22796 1.73863 1.13276 1.09350 1.20167 1.25266 0.88818 0.92870 1.00485 1.19722 0.87980 0.95729 0.97642 0.88540 1.21569 0.97104 1.01161 0.97583 1.18847 0.94766 0.95773 0.89412 1.21591 1.18457 1.20853 0.95763 0.90387 1.26043 0.99796 0.97748 0.96447 1.70163 1.44067 1.40548 1.03105 0.85400 0.78772 0.79263 0.77323 1.20037 1.21427 1.17701 1.46241 1.10866 1.09690 1.51085 1.22490 1.03891 0.77097 1.04158 0.90545 0.92415 0.90265 0.92028 0.92441 0.88803 0.85652 0.96139 0.89040 0.91775 0.91940 0.94351 0.90688 0.99443 1.00472 0.92991 0.87611 0.88687 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.04 71.98 0.72 -1.25 16 2 C 0.06 1.28 5.22 86.30 0.45 1.73 16 3 N -0.45 -10.81 4.70 -706.06 -3.32 -14.12 16 4 C 0.04 0.63 5.78 86.30 0.50 1.13 16 5 C -0.18 -3.22 9.35 71.98 0.67 -2.55 16 6 C 0.36 12.05 5.63 260.11 1.46 13.51 16 7 N -0.37 -15.65 10.94 -58.01 -0.63 -16.28 16 8 N -0.33 -15.59 12.18 -49.53 -0.60 -16.19 16 9 C 0.20 8.09 6.58 137.64 0.91 9.00 16 10 C 0.01 0.43 2.70 -11.54 -0.03 0.39 16 11 H 0.10 3.49 6.94 -2.38 -0.02 3.48 16 12 C -0.12 -4.41 8.98 71.98 0.65 -3.76 16 13 C 0.05 2.74 4.43 29.84 0.13 2.87 16 14 C -0.53 -29.18 8.41 25.60 0.22 -28.96 16 15 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 18 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 22 N -0.48 -15.78 3.21 -538.19 -1.73 -17.51 16 23 C 0.06 1.33 9.21 127.77 1.18 2.50 16 24 H 0.08 0.79 6.84 -2.38 -0.02 0.77 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.79 7.33 -2.39 -0.02 1.77 16 28 H 0.06 1.24 5.99 -2.39 -0.01 1.23 16 29 H 0.09 1.24 5.45 -2.39 -0.01 1.22 16 30 H 0.13 1.21 6.74 -2.39 -0.02 1.20 16 31 H 0.02 0.51 6.98 -2.39 -0.02 0.49 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.12 6.53 -2.39 -0.02 1.10 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.80 6.95 -2.38 -0.02 2.78 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 39 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.11 1.52 7.87 -2.39 -0.02 1.50 16 41 H 0.09 2.01 7.23 -2.39 -0.02 1.99 16 42 H 0.11 1.79 7.55 -2.39 -0.02 1.78 16 Total: -1.00 -77.68 331.72 4.34 -73.34 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.00 Total: 8.65 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 7.32 Total: -5.09 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -6.00 Total: -122.60 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.68 4.34 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355703707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.425 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds