Wall clock time and date at job start Mon Mar 30 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46684 * 2 1 4 4 N 1.28713 * 125.86803 * 270.02009 * 3 2 1 5 5 N 1.28636 * 110.18004 * 179.97438 * 4 3 2 6 6 C 1.33776 * 108.88190 * 359.76769 * 5 4 3 7 7 C 1.50704 * 126.75080 * 180.23678 * 6 5 4 8 8 C 1.35310 * 125.86788 * 90.00656 * 3 2 1 9 9 C 1.50703 * 126.91292 * 359.97438 * 8 3 2 10 10 N 1.46899 * 109.47107 * 90.00133 * 9 8 3 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99873 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00054 * 180.02562 * 15 12 11 18 18 N 1.31504 * 120.00303 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99645 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46968 * 90.00116 * 19 17 15 21 21 H 1.48498 * 109.46738 * 209.99954 * 19 17 15 22 22 H 1.48500 * 109.46999 * 329.99875 * 19 17 15 23 23 H 1.08998 * 109.47280 * 59.99750 * 1 2 3 24 24 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46911 * 300.00066 * 1 2 3 26 26 H 1.09000 * 109.46807 * 240.00055 * 2 1 3 27 27 H 1.08998 * 109.46989 * 119.99786 * 2 1 3 28 28 H 1.09004 * 109.46719 * 270.16171 * 7 6 5 29 29 H 1.08998 * 109.46997 * 30.15731 * 7 6 5 30 30 H 1.08998 * 109.47102 * 150.15870 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00221 * 9 8 3 32 32 H 1.09001 * 109.46980 * 210.00321 * 9 8 3 33 33 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 34 34 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 35 35 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 36 36 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 37 37 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 38 38 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 39 39 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 40 40 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 42 42 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2693 2.0924 -1.0430 5 7 2.6816 3.2602 -0.6952 6 6 2.7017 3.3322 0.6405 7 6 3.1134 4.5187 1.4735 8 6 2.2826 2.1287 1.0965 9 6 2.1336 1.7082 2.5360 10 7 3.3908 1.1096 3.0039 11 6 3.2827 0.6873 4.4068 12 6 4.6085 0.0708 4.8574 13 6 4.9301 -1.1427 3.9828 14 6 5.7254 1.1076 4.7215 15 6 4.4975 -0.3629 6.2963 16 1 3.5735 -0.2142 6.8354 17 6 5.5755 -0.9497 6.9246 18 7 6.7004 -1.1313 6.2681 19 14 5.4375 -1.4880 8.7081 20 1 4.9564 -2.8917 8.7656 21 1 6.7695 -1.3942 9.3578 22 1 4.4769 -0.6060 9.4185 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1833 4.4670 1.6755 29 1 2.8899 5.4378 0.9320 30 1 2.5648 4.5093 2.4153 31 1 1.3297 0.9768 2.6195 32 1 1.8967 2.5797 3.1464 33 1 3.6658 0.3385 2.4140 34 1 3.0541 1.5519 5.0299 35 1 2.4867 -0.0511 4.5036 36 1 5.0103 -0.8293 2.9419 37 1 5.8744 -1.5822 4.3041 38 1 4.1345 -1.8814 4.0796 39 1 5.4963 1.9722 5.3446 40 1 6.6698 0.6686 5.0429 41 1 5.8056 1.4210 3.6805 42 1 7.4586 -1.5444 6.7100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461566834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:37 Heat of formation + Delta-G solvation = 83.778926 kcal Electronic energy + Delta-G solvation = -20902.872332 eV Core-core repulsion = 17919.812992 eV Total energy + Delta-G solvation = -2983.059340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.19418 -37.18795 -35.67191 -34.51641 -32.37686 -31.21171 -30.37508 -27.81781 -25.74799 -25.64360 -25.24237 -24.53007 -23.08137 -21.14417 -20.50708 -18.55719 -17.07777 -16.30815 -16.06251 -15.58372 -14.99254 -14.58629 -14.11206 -13.91540 -13.70399 -13.43169 -12.90317 -12.78040 -12.54174 -12.53504 -12.21440 -12.17446 -11.90838 -11.78938 -11.37847 -11.19382 -11.07276 -10.76144 -10.67250 -10.56588 -10.25684 -10.12230 -9.92299 -9.46522 -9.23132 -8.83595 -8.68031 -8.34771 -7.90427 -5.96601 -4.07595 1.63731 2.34560 2.65646 3.27344 3.35167 3.37469 4.25400 4.36165 4.44177 4.54987 4.76467 4.82855 4.87444 5.00038 5.14046 5.24077 5.29155 5.43937 5.53458 5.68792 5.82192 5.85981 5.97865 6.09128 6.19156 6.24038 6.43713 6.60978 6.64869 6.78666 6.97165 7.07303 7.30738 7.36674 7.57057 7.68515 7.74448 7.76547 8.12953 8.27758 8.48564 8.62551 8.93667 9.57937 11.03918 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.004435 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.867796 B = 6311.198972 C = 6736.760133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.109 3.891 3 N -0.288 5.288 4 N -0.093 5.093 5 N -0.274 5.274 6 C -0.006 4.006 7 C -0.062 4.062 8 C -0.007 4.007 9 C 0.131 3.869 10 N -0.677 5.677 11 C 0.075 3.925 12 C 0.070 3.930 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.508 4.508 16 H 0.052 0.948 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.084 0.916 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 3.005 -8.984 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.083 5.083 4 N -0.071 5.071 5 N -0.141 5.141 6 C -0.145 4.145 7 C -0.121 4.121 8 C -0.139 4.139 9 C 0.000 4.000 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.191 4.191 14 C -0.177 4.177 15 C -0.547 4.547 16 H 0.070 0.930 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.717 3.283 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.103 0.897 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.000 3.542 -10.356 14.826 hybrid contribution -0.683 -1.446 2.002 2.563 sum -10.683 2.096 -8.354 13.723 Atomic orbital electron populations 1.22154 0.93090 1.03866 1.03527 1.22063 0.96244 0.77130 1.05834 1.47271 1.43189 1.13174 1.04644 1.78203 1.17730 0.99205 1.11964 1.75006 1.16390 1.10523 1.12179 1.21758 1.05007 0.96605 0.91131 1.20033 1.02346 0.92509 0.97172 1.21957 1.07527 0.92861 0.91555 1.20365 0.92657 1.00294 0.86711 1.60636 1.28231 1.36956 1.05198 1.22221 0.99762 0.97737 0.85520 1.18090 0.89272 0.91685 0.94041 1.21848 1.02929 0.98979 0.95304 1.21642 1.01952 0.97216 0.96925 1.21075 0.98277 1.39361 0.95979 0.92952 1.24881 0.95337 0.95681 0.97606 1.69823 1.02630 1.43726 1.36047 0.86656 0.77343 0.78878 0.85442 1.20887 1.21268 1.20026 0.91327 0.89688 0.91611 0.87472 0.87994 0.90238 0.91198 0.90770 0.94774 0.88523 0.84499 0.92034 0.96650 0.97285 0.89708 0.96227 0.96148 0.90736 0.96107 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.11 1.02 6.75 -4.04 -0.03 0.99 16 3 N -0.29 -3.86 3.34 -57.04 -0.19 -4.05 16 4 N -0.09 -1.48 13.16 60.35 0.79 -0.68 16 5 N -0.27 -4.62 12.41 33.29 0.41 -4.20 16 6 C -0.01 -0.10 7.25 -82.77 -0.60 -0.70 16 7 C -0.06 -0.76 10.27 36.01 0.37 -0.39 16 8 C -0.01 -0.10 6.51 -82.09 -0.53 -0.63 16 9 C 0.13 1.74 5.58 -4.98 -0.03 1.71 16 10 N -0.68 -11.05 5.70 -115.05 -0.66 -11.70 16 11 C 0.08 1.43 4.59 -3.82 -0.02 1.42 16 12 C 0.07 1.60 0.57 -155.66 -0.09 1.51 16 13 C -0.13 -2.99 7.92 37.16 0.29 -2.69 16 14 C -0.12 -2.82 8.09 37.16 0.30 -2.52 16 15 C -0.51 -13.09 8.01 -34.44 -0.28 -13.36 16 16 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 18 N -0.88 -23.86 9.35 55.43 0.52 -23.34 16 19 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.10 0.90 7.72 -51.93 -0.40 0.50 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 31 H 0.03 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.10 1.22 7.30 -51.93 -0.38 0.84 16 33 H 0.34 5.55 6.77 -39.29 -0.27 5.28 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.01 0.17 6.57 -51.93 -0.34 -0.17 16 37 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.95 6.07 -51.93 -0.32 1.63 16 41 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 42 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -29.18 336.43 -6.36 -35.53 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.97 Total: 1.81 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.32 Total: -13.91 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.88 Total: -43.98 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.18 -6.36 -35.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461566834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.314 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds