Wall clock time and date at job start Mon Mar 30 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46684 * 2 1 4 4 N 1.28713 * 125.86803 * 270.02009 * 3 2 1 5 5 N 1.28636 * 110.18004 * 179.97438 * 4 3 2 6 6 C 1.33776 * 108.88190 * 359.76769 * 5 4 3 7 7 C 1.50704 * 126.75080 * 180.23678 * 6 5 4 8 8 C 1.35310 * 125.86788 * 90.00656 * 3 2 1 9 9 C 1.50703 * 126.91292 * 359.97438 * 8 3 2 10 10 N 1.46899 * 109.47107 * 90.00133 * 9 8 3 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47312 * 300.00123 * 12 11 10 14 14 C 1.52997 * 109.47169 * 60.00159 * 12 11 10 15 15 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 16 16 H 1.08009 * 119.99873 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00054 * 180.02562 * 15 12 11 18 18 N 1.31504 * 120.00303 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99645 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.46968 * 90.00116 * 19 17 15 21 21 H 1.48498 * 109.46738 * 209.99954 * 19 17 15 22 22 H 1.48500 * 109.46999 * 329.99875 * 19 17 15 23 23 H 1.08998 * 109.47280 * 59.99750 * 1 2 3 24 24 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46911 * 300.00066 * 1 2 3 26 26 H 1.09000 * 109.46807 * 240.00055 * 2 1 3 27 27 H 1.08998 * 109.46989 * 119.99786 * 2 1 3 28 28 H 1.09004 * 109.46719 * 270.16171 * 7 6 5 29 29 H 1.08998 * 109.46997 * 30.15731 * 7 6 5 30 30 H 1.08998 * 109.47102 * 150.15870 * 7 6 5 31 31 H 1.09002 * 109.47152 * 330.00221 * 9 8 3 32 32 H 1.09001 * 109.46980 * 210.00321 * 9 8 3 33 33 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 34 34 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 35 35 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 36 36 H 1.09002 * 109.47029 * 60.00405 * 13 12 11 37 37 H 1.09000 * 109.47152 * 180.02562 * 13 12 11 38 38 H 1.08993 * 109.47356 * 300.00089 * 13 12 11 39 39 H 1.09005 * 109.46874 * 60.00300 * 14 12 11 40 40 H 1.09000 * 109.47103 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47446 * 299.99763 * 14 12 11 42 42 H 0.96998 * 120.00316 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2693 2.0924 -1.0430 5 7 2.6816 3.2602 -0.6952 6 6 2.7017 3.3322 0.6405 7 6 3.1134 4.5187 1.4735 8 6 2.2826 2.1287 1.0965 9 6 2.1336 1.7082 2.5360 10 7 3.3908 1.1096 3.0039 11 6 3.2827 0.6873 4.4068 12 6 4.6085 0.0708 4.8574 13 6 4.9301 -1.1427 3.9828 14 6 5.7254 1.1076 4.7215 15 6 4.4975 -0.3629 6.2963 16 1 3.5735 -0.2142 6.8354 17 6 5.5755 -0.9497 6.9246 18 7 6.7004 -1.1313 6.2681 19 14 5.4375 -1.4880 8.7081 20 1 4.9564 -2.8917 8.7656 21 1 6.7695 -1.3942 9.3578 22 1 4.4769 -0.6060 9.4185 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1833 4.4670 1.6755 29 1 2.8899 5.4378 0.9320 30 1 2.5648 4.5093 2.4153 31 1 1.3297 0.9768 2.6195 32 1 1.8967 2.5797 3.1464 33 1 3.6658 0.3385 2.4140 34 1 3.0541 1.5519 5.0299 35 1 2.4867 -0.0511 4.5036 36 1 5.0103 -0.8293 2.9419 37 1 5.8744 -1.5822 4.3041 38 1 4.1345 -1.8814 4.0796 39 1 5.4963 1.9722 5.3446 40 1 6.6698 0.6686 5.0429 41 1 5.8056 1.4210 3.6805 42 1 7.4586 -1.5444 6.7100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461566834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:37 Heat of formation + Delta-G solvation = 65.731583 kcal Electronic energy + Delta-G solvation = -20903.654923 eV Core-core repulsion = 17919.812992 eV Total energy + Delta-G solvation = -2983.841931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.27911 -38.73270 -36.64621 -35.95169 -33.77210 -32.53041 -31.57061 -28.90587 -27.48819 -27.22934 -26.94505 -25.46533 -24.45030 -22.16903 -21.54029 -20.32589 -18.15201 -17.76441 -17.35931 -17.08637 -16.40642 -15.74789 -15.48503 -15.16936 -14.71922 -14.40224 -14.32242 -14.15045 -13.92083 -13.68220 -13.42697 -13.17716 -13.03313 -12.93114 -12.83350 -12.62983 -12.53610 -12.47261 -12.28586 -12.09810 -12.04741 -11.69712 -11.27707 -11.04239 -10.90211 -10.57681 -10.31652 -9.94496 -9.20184 -7.93838 -6.10509 0.55498 1.42808 1.44488 1.47914 1.51907 1.55221 2.49055 3.27858 3.29246 3.47405 3.63992 3.78658 3.89800 3.96101 4.19971 4.27786 4.48928 4.57425 4.65375 4.69860 4.71917 4.85468 4.88356 4.90136 4.98798 5.06102 5.10355 5.13360 5.18988 5.31672 5.43551 5.45845 5.57167 5.66344 5.73482 5.79753 6.12335 6.23564 6.35579 6.47189 6.57920 6.99903 7.50449 7.57665 9.04143 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.004435 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.867796 B = 6311.198972 C = 6736.760133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.279 5.279 4 N -0.113 5.113 5 N -0.308 5.308 6 C -0.019 4.019 7 C -0.061 4.061 8 C -0.010 4.010 9 C 0.138 3.862 10 N -0.682 5.682 11 C 0.092 3.908 12 C 0.060 3.940 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.521 4.521 16 H 0.050 0.950 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.271 1.271 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.335 0.665 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.014 0.986 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 2.716 -8.758 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.074 5.074 4 N -0.091 5.091 5 N -0.173 5.173 6 C -0.159 4.159 7 C -0.119 4.119 8 C -0.143 4.143 9 C 0.007 3.993 10 N -0.315 5.315 11 C -0.037 4.037 12 C 0.059 3.941 13 C -0.180 4.180 14 C -0.164 4.164 15 C -0.560 4.560 16 H 0.068 0.932 17 C -0.177 4.177 18 N -0.544 5.544 19 Si 0.769 3.231 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.195 1.195 23 H 0.078 0.922 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.571 3.248 -10.150 15.731 hybrid contribution -0.213 -1.378 1.899 2.356 sum -11.783 1.870 -8.251 14.506 Atomic orbital electron populations 1.22130 0.91503 1.05362 1.02903 1.22480 0.97544 0.75314 1.06970 1.47618 1.41789 1.14064 1.03947 1.78128 1.18595 0.99481 1.12917 1.74971 1.17703 1.11313 1.13352 1.22267 1.04850 0.97865 0.90885 1.20109 1.02122 0.92074 0.97620 1.22062 1.07512 0.92745 0.91967 1.20376 0.91760 1.01007 0.86138 1.60510 1.30318 1.36802 1.03862 1.21853 0.97385 0.97484 0.86950 1.18142 0.91134 0.91793 0.93020 1.21673 1.01227 0.98751 0.96309 1.21476 1.00827 0.96951 0.97168 1.21435 0.98008 1.38990 0.97575 0.93195 1.25522 0.95294 0.96114 1.00770 1.69972 1.03006 1.44349 1.37098 0.85811 0.77022 0.78515 0.81740 1.20607 1.21613 1.19547 0.92194 0.87109 0.91934 0.86271 0.86981 0.90774 0.90280 0.89186 0.92623 0.87448 0.84577 0.92183 0.96067 0.95295 0.92917 0.95887 0.96677 0.93731 0.95102 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 10.24 71.98 0.74 -1.29 16 2 C 0.10 1.58 6.75 86.38 0.58 2.16 16 3 N -0.28 -7.00 3.34 -334.39 -1.12 -8.12 16 4 N -0.11 -3.51 13.16 37.02 0.49 -3.02 16 5 N -0.31 -10.20 12.41 -48.60 -0.60 -10.80 16 6 C -0.02 -0.55 7.25 41.60 0.30 -0.25 16 7 C -0.06 -1.40 10.27 71.24 0.73 -0.66 16 8 C -0.01 -0.26 6.51 41.36 0.27 0.01 16 9 C 0.14 3.26 5.58 85.56 0.48 3.73 16 10 N -0.68 -20.50 5.70 -517.92 -2.95 -23.45 16 11 C 0.09 3.27 4.59 86.30 0.40 3.66 16 12 C 0.06 2.66 0.57 -52.93 -0.03 2.63 16 13 C -0.12 -5.35 7.92 71.98 0.57 -4.78 16 14 C -0.11 -4.96 8.09 71.98 0.58 -4.37 16 15 C -0.52 -26.42 8.01 25.60 0.21 -26.21 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 17 C 0.02 1.14 5.15 84.66 0.44 1.58 16 18 N -0.90 -49.25 9.35 21.45 0.20 -49.05 16 19 Si 0.94 41.76 29.54 68.60 2.03 43.79 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 1.64 7.72 -2.39 -0.02 1.62 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.74 7.31 -2.39 -0.02 1.72 16 31 H 0.06 1.12 7.81 -2.39 -0.02 1.10 16 32 H 0.11 2.35 7.30 -2.39 -0.02 2.33 16 33 H 0.34 10.18 6.77 -89.69 -0.61 9.58 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.03 1.11 6.57 -2.39 -0.02 1.10 16 37 H 0.05 2.67 6.07 -2.39 -0.01 2.65 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.04 2.34 6.07 -2.39 -0.01 2.32 16 41 H 0.03 1.32 7.60 -2.39 -0.02 1.31 16 42 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -61.96 336.43 3.69 -58.26 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.39 Total: 16.17 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 5.26 Total: -23.79 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.98 Total: -94.44 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -61.96 3.69 -58.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461566834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.996 kcal (2) G-P(sol) polarization free energy of solvation -61.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds