Wall clock time and date at job start Mon Mar 30 2020 00:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50702 * 120.00034 * 2 1 4 4 C 1.53003 * 109.47196 * 125.00141 * 3 2 1 5 5 C 1.50702 * 109.47196 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99575 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00335 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99594 * 0.02562 * 7 5 4 9 9 C 1.46501 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.09000 * 109.46894 * 0.02562 * 9 7 5 11 11 C 1.52998 * 109.46930 * 240.00162 * 9 7 5 12 12 N 1.46497 * 109.47175 * 54.99916 * 11 9 7 13 13 C 1.36938 * 119.99875 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.38816 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31612 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47398 * 59.99824 * 17 15 13 19 19 H 1.48499 * 109.47151 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47061 * 299.99799 * 17 15 13 21 21 C 1.52993 * 109.47004 * 120.00028 * 9 7 5 22 22 C 1.53003 * 117.49988 * 248.74516 * 21 9 7 23 23 C 1.53004 * 117.49817 * 180.08937 * 21 9 7 24 24 H 1.08002 * 119.99625 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00562 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47188 * 5.00311 * 3 2 1 28 28 H 1.09001 * 109.47214 * 245.00510 * 3 2 1 29 29 H 1.09000 * 109.46913 * 60.00002 * 4 3 2 30 30 H 1.08996 * 109.47080 * 299.99922 * 4 3 2 31 31 H 1.09001 * 109.47060 * 90.00388 * 8 7 5 32 32 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 33 33 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 34 34 H 1.09003 * 109.47292 * 175.00032 * 11 9 7 35 35 H 1.09000 * 109.47028 * 294.99614 * 11 9 7 36 36 H 0.97000 * 120.00199 * 359.97438 * 12 11 9 37 37 H 0.97004 * 120.00488 * 180.02562 * 16 15 13 38 38 H 1.09006 * 115.55680 * 34.41872 * 21 9 7 39 39 H 1.09001 * 117.49612 * 0.02562 * 22 21 9 40 40 H 1.08999 * 117.49835 * 145.02549 * 22 21 9 41 41 H 1.09009 * 117.49742 * 214.98163 * 23 21 9 42 42 H 1.09000 * 117.49727 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6380 1.1813 6 8 3.5703 3.4643 0.3209 7 7 4.7054 2.8870 2.1375 8 6 4.9690 1.8889 3.1771 9 6 5.4380 4.1557 2.1375 10 1 5.1091 4.7651 1.2957 11 6 6.9374 3.8788 2.0122 12 7 7.1853 3.0611 0.8222 13 6 8.4629 2.6849 0.5039 14 1 9.2879 2.9913 1.1300 15 6 8.6979 1.9105 -0.6240 16 7 7.6926 1.5375 -1.3872 17 14 10.4407 1.3979 -1.0585 18 1 11.0125 0.5957 0.0528 19 1 10.4221 0.5826 -2.2995 20 1 11.2734 2.6083 -1.2746 21 6 5.1647 4.9024 3.4446 22 6 4.3379 6.1873 3.3646 23 6 5.8423 6.2606 3.6373 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7399 0.5066 1.0920 30 1 2.4773 1.2356 2.1130 31 1 5.7637 1.2204 2.8458 32 1 5.2762 2.3919 4.0941 33 1 4.0635 1.3120 3.3649 34 1 7.4751 4.8228 1.9228 35 1 7.2837 3.3459 2.8978 36 1 6.4443 2.7856 0.2601 37 1 7.8566 0.9961 -2.1752 38 1 5.0354 4.2749 4.3264 39 1 3.9883 6.5004 2.3808 40 1 3.6650 6.4053 4.1939 41 1 6.1586 6.5267 4.6460 42 1 6.4831 6.6219 2.8330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485802983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:44 Heat of formation + Delta-G solvation = 17.304293 kcal Electronic energy + Delta-G solvation = -20855.658795 eV Core-core repulsion = 17837.424148 eV Total energy + Delta-G solvation = -3018.234647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80983 -37.61058 -35.32827 -34.97021 -33.95010 -31.38034 -30.40227 -28.14167 -26.43107 -24.62503 -23.61238 -22.38484 -21.51972 -19.98010 -19.69386 -18.66267 -17.12950 -16.79899 -16.09047 -15.67922 -14.89381 -14.67160 -14.50404 -14.15942 -13.50709 -13.44124 -13.03579 -12.97252 -12.71645 -12.40588 -12.18035 -11.96136 -11.72457 -11.43424 -11.41819 -11.04249 -10.95340 -10.87192 -10.79522 -10.66426 -10.29690 -10.14426 -9.77810 -9.61287 -9.42195 -9.17929 -8.82990 -8.15361 -6.86638 -5.70420 -2.99642 2.29926 3.11763 3.36477 3.45818 3.50221 3.51488 3.97781 4.60196 4.77611 4.85479 5.06348 5.07227 5.11490 5.22446 5.31666 5.41805 5.44246 5.46237 5.60331 5.70995 5.74786 5.77181 5.86315 5.88281 5.98748 6.02926 6.12871 6.17785 6.24761 6.28985 6.33631 6.36836 6.53978 6.67030 6.79227 6.82469 7.06533 7.72442 7.83233 8.47276 8.65704 9.58576 10.17690 10.53326 11.51700 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.006944 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.894920 B = 4031.562305 C = 5983.678519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.081 4.081 4 C -0.131 4.131 5 C 0.518 3.482 6 O -0.542 6.542 7 N -0.596 5.596 8 C 0.080 3.920 9 C 0.162 3.838 10 H 0.100 0.900 11 C 0.149 3.851 12 N -0.728 5.728 13 C -0.240 4.240 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.158 4.158 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 0.915 11.090 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.171 4.171 5 C 0.307 3.693 6 O -0.420 6.420 7 N -0.329 5.329 8 C -0.063 4.063 9 C 0.058 3.942 10 H 0.118 0.882 11 C 0.020 3.980 12 N -0.372 5.372 13 C -0.372 4.372 14 H 0.086 0.914 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.178 4.178 22 C -0.216 4.216 23 C -0.208 4.208 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.321 1.321 10.623 15.581 hybrid contribution 0.889 -0.570 -0.319 1.104 sum -10.432 0.750 10.304 14.682 Atomic orbital electron populations 1.23801 0.95953 1.01540 1.02772 1.23050 0.95998 0.98708 0.98455 1.20525 0.97690 0.94829 0.98810 1.21597 0.98853 0.96489 1.00176 1.20548 0.79431 0.88700 0.80647 1.90674 1.66226 1.48390 1.36665 1.47586 1.39257 1.17678 1.28336 1.21728 1.01468 0.92107 0.91013 1.20883 0.92947 0.84419 0.95956 0.88235 1.20915 0.90925 0.94863 0.91268 1.42294 1.06767 1.61247 1.26932 1.19162 0.85209 1.26103 1.06688 0.91379 1.24733 0.97147 1.01067 0.97907 1.69674 1.29340 1.41597 1.17184 0.86293 0.84444 0.78146 0.77422 1.21368 1.21733 1.21328 1.22557 1.05332 0.90368 0.99537 1.23007 0.93922 1.01728 1.02926 1.22925 0.95333 0.99778 1.02795 0.88780 0.88716 0.87309 0.91064 0.89680 0.88529 0.89495 0.91643 0.91470 0.91691 0.95518 0.96197 0.77959 0.93536 0.87758 0.88703 0.89245 0.88896 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 29.02 0.42 -1.72 16 2 C -0.14 -1.70 9.52 -36.02 -0.34 -2.04 16 3 C -0.08 -1.14 4.95 -27.88 -0.14 -1.28 16 4 C -0.13 -1.84 4.23 -27.88 -0.12 -1.96 16 5 C 0.52 9.37 7.38 -10.99 -0.08 9.29 16 6 O -0.54 -11.83 15.31 5.55 0.09 -11.74 16 7 N -0.60 -10.00 2.24 -173.93 -0.39 -10.39 16 8 C 0.08 1.07 9.38 59.85 0.56 1.63 16 9 C 0.16 2.85 2.42 -67.93 -0.16 2.69 16 10 H 0.10 2.04 6.66 -51.93 -0.35 1.69 16 11 C 0.15 3.07 5.32 -4.04 -0.02 3.05 16 12 N -0.73 -19.02 5.43 -59.91 -0.33 -19.35 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 17 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 C -0.16 -2.18 5.15 -90.62 -0.47 -2.64 16 22 C -0.18 -2.23 10.18 -26.69 -0.27 -2.50 16 23 C -0.17 -2.11 9.80 -26.69 -0.26 -2.37 16 24 H 0.09 0.84 8.06 -52.49 -0.42 0.41 16 25 H 0.09 0.96 7.84 -52.49 -0.41 0.55 16 26 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 27 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 28 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.09 0.98 7.40 -51.93 -0.38 0.59 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 33 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 34 H 0.03 0.56 7.48 -51.93 -0.39 0.17 16 35 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 36 H 0.39 10.94 7.06 -40.82 -0.29 10.65 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.10 1.29 6.59 -51.93 -0.34 0.95 16 39 H 0.09 1.28 8.05 -51.93 -0.42 0.87 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.10 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -33.11 345.13 -7.82 -40.93 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.95 Total: 11.03 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.14 Total: -5.31 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.01 Total: -57.81 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.11 -7.82 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485802983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.237 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds