Wall clock time and date at job start Mon Mar 30 2020 00:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50702 * 120.00034 * 2 1 4 4 C 1.53003 * 109.47196 * 125.00141 * 3 2 1 5 5 C 1.50702 * 109.47196 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99575 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00335 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99594 * 0.02562 * 7 5 4 9 9 C 1.46501 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.09000 * 109.46894 * 0.02562 * 9 7 5 11 11 C 1.52998 * 109.46930 * 240.00162 * 9 7 5 12 12 N 1.46497 * 109.47175 * 54.99916 * 11 9 7 13 13 C 1.36938 * 119.99875 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00080 * 359.97438 * 13 12 11 15 15 C 1.38816 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31612 * 119.99914 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47398 * 59.99824 * 17 15 13 19 19 H 1.48499 * 109.47151 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47061 * 299.99799 * 17 15 13 21 21 C 1.52993 * 109.47004 * 120.00028 * 9 7 5 22 22 C 1.53003 * 117.49988 * 248.74516 * 21 9 7 23 23 C 1.53004 * 117.49817 * 180.08937 * 21 9 7 24 24 H 1.08002 * 119.99625 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00562 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47188 * 5.00311 * 3 2 1 28 28 H 1.09001 * 109.47214 * 245.00510 * 3 2 1 29 29 H 1.09000 * 109.46913 * 60.00002 * 4 3 2 30 30 H 1.08996 * 109.47080 * 299.99922 * 4 3 2 31 31 H 1.09001 * 109.47060 * 90.00388 * 8 7 5 32 32 H 1.09004 * 109.47073 * 209.99877 * 8 7 5 33 33 H 1.09000 * 109.47212 * 329.99960 * 8 7 5 34 34 H 1.09003 * 109.47292 * 175.00032 * 11 9 7 35 35 H 1.09000 * 109.47028 * 294.99614 * 11 9 7 36 36 H 0.97000 * 120.00199 * 359.97438 * 12 11 9 37 37 H 0.97004 * 120.00488 * 180.02562 * 16 15 13 38 38 H 1.09006 * 115.55680 * 34.41872 * 21 9 7 39 39 H 1.09001 * 117.49612 * 0.02562 * 22 21 9 40 40 H 1.08999 * 117.49835 * 145.02549 * 22 21 9 41 41 H 1.09009 * 117.49742 * 214.98163 * 23 21 9 42 42 H 1.09000 * 117.49727 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6380 1.1813 6 8 3.5703 3.4643 0.3209 7 7 4.7054 2.8870 2.1375 8 6 4.9690 1.8889 3.1771 9 6 5.4380 4.1557 2.1375 10 1 5.1091 4.7651 1.2957 11 6 6.9374 3.8788 2.0122 12 7 7.1853 3.0611 0.8222 13 6 8.4629 2.6849 0.5039 14 1 9.2879 2.9913 1.1300 15 6 8.6979 1.9105 -0.6240 16 7 7.6926 1.5375 -1.3872 17 14 10.4407 1.3979 -1.0585 18 1 11.0125 0.5957 0.0528 19 1 10.4221 0.5826 -2.2995 20 1 11.2734 2.6083 -1.2746 21 6 5.1647 4.9024 3.4446 22 6 4.3379 6.1873 3.3646 23 6 5.8423 6.2606 3.6373 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7399 0.5066 1.0920 30 1 2.4773 1.2356 2.1130 31 1 5.7637 1.2204 2.8458 32 1 5.2762 2.3919 4.0941 33 1 4.0635 1.3120 3.3649 34 1 7.4751 4.8228 1.9228 35 1 7.2837 3.3459 2.8978 36 1 6.4443 2.7856 0.2601 37 1 7.8566 0.9961 -2.1752 38 1 5.0354 4.2749 4.3264 39 1 3.9883 6.5004 2.3808 40 1 3.6650 6.4053 4.1939 41 1 6.1586 6.5267 4.6460 42 1 6.4831 6.6219 2.8330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485802983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:44 Heat of formation + Delta-G solvation = -3.002712 kcal Electronic energy + Delta-G solvation = -20856.539373 eV Core-core repulsion = 17837.424148 eV Total energy + Delta-G solvation = -3019.115225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18294 -38.87480 -36.60680 -36.23625 -35.71948 -33.24416 -31.68583 -29.71791 -27.67533 -26.30345 -25.05850 -23.64871 -22.89491 -21.22880 -20.66694 -20.04172 -19.15186 -18.14875 -17.37703 -16.94238 -16.60811 -16.06592 -15.70760 -15.47202 -15.17545 -14.84462 -14.77188 -14.32252 -14.02592 -13.61891 -13.43097 -13.23211 -13.14921 -12.91508 -12.77794 -12.67237 -12.40561 -12.22096 -12.15056 -12.00747 -11.88539 -11.77380 -11.33265 -11.00212 -10.90120 -10.70903 -10.19934 -9.52781 -9.01322 -7.94059 -5.24543 1.40758 1.44838 1.48791 1.54966 1.72002 2.10595 2.54513 2.90890 3.38377 3.56065 3.69497 3.98730 3.99482 4.07201 4.13775 4.16328 4.28497 4.34166 4.40412 4.46251 4.49242 4.56260 4.68768 4.77002 4.79444 4.88541 4.94387 4.99211 5.04688 5.08896 5.10666 5.22703 5.27107 5.30042 5.46084 5.69266 5.76766 5.92567 6.25301 6.50684 7.27462 7.31954 8.07534 8.31620 9.28831 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.006944 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.894920 B = 4031.562305 C = 5983.678519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C -0.076 4.076 4 C -0.122 4.122 5 C 0.504 3.496 6 O -0.593 6.593 7 N -0.597 5.597 8 C 0.076 3.924 9 C 0.168 3.832 10 H 0.061 0.939 11 C 0.150 3.850 12 N -0.742 5.742 13 C -0.246 4.246 14 H 0.077 0.923 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.976 3.024 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.280 1.280 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.163 4.163 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 0.312 13.777 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.114 4.114 4 C -0.161 4.161 5 C 0.294 3.706 6 O -0.474 6.474 7 N -0.328 5.328 8 C -0.065 4.065 9 C 0.064 3.936 10 H 0.079 0.921 11 C 0.022 3.978 12 N -0.384 5.384 13 C -0.378 4.378 14 H 0.095 0.905 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.206 1.206 21 C -0.183 4.183 22 C -0.209 4.209 23 C -0.200 4.200 24 H 0.134 0.866 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.581 0.728 13.382 17.713 hybrid contribution 0.943 -0.315 -1.134 1.508 sum -10.638 0.413 12.248 16.229 Atomic orbital electron populations 1.24024 0.95432 1.02733 1.00008 1.22925 0.96455 0.97581 1.00898 1.20419 0.97452 0.96326 0.97231 1.21616 0.98678 0.93874 1.01924 1.21369 0.79702 0.89530 0.80000 1.90642 1.67949 1.50237 1.38557 1.47741 1.38337 1.17966 1.28714 1.21949 1.02544 0.91472 0.90578 1.20637 0.90828 0.85062 0.97077 0.92066 1.21072 0.93341 0.93823 0.89528 1.42506 1.05648 1.61900 1.28365 1.19607 0.86360 1.25247 1.06585 0.90480 1.25605 1.01236 1.01760 0.98122 1.69866 1.31636 1.42809 1.17683 0.85178 0.79555 0.77779 0.77011 1.19880 1.22331 1.20598 1.22460 1.07074 0.90902 0.97889 1.23034 0.94592 1.00324 1.02947 1.23010 0.95007 0.98198 1.03820 0.86552 0.88479 0.86430 0.91617 0.93375 0.88470 0.85702 0.94044 0.89060 0.88170 0.95714 0.94737 0.79738 0.94169 0.85289 0.90703 0.86528 0.86027 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 14.32 67.79 0.97 -2.52 16 2 C -0.16 -3.62 9.52 25.66 0.24 -3.38 16 3 C -0.08 -2.22 4.95 29.85 0.15 -2.07 16 4 C -0.12 -3.38 4.23 29.85 0.13 -3.25 16 5 C 0.50 18.73 7.38 87.66 0.65 19.38 16 6 O -0.59 -27.54 15.31 -3.04 -0.05 -27.59 16 7 N -0.60 -19.95 2.24 -822.58 -1.85 -21.79 16 8 C 0.08 1.90 9.38 127.77 1.20 3.10 16 9 C 0.17 6.00 2.42 44.99 0.11 6.11 16 10 H 0.06 2.66 6.66 -2.39 -0.02 2.64 16 11 C 0.15 6.21 5.32 86.38 0.46 6.67 16 12 N -0.74 -39.78 5.43 -343.45 -1.87 -41.64 16 13 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 14 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 15 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 16 N -0.97 -61.90 13.06 21.65 0.28 -61.61 16 17 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C -0.16 -4.21 5.15 -10.79 -0.06 -4.26 16 22 C -0.17 -4.01 10.18 30.62 0.31 -3.69 16 23 C -0.16 -3.70 9.80 30.62 0.30 -3.40 16 24 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 25 H 0.10 1.79 7.84 -2.91 -0.02 1.76 16 26 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.07 1.93 7.75 -2.39 -0.02 1.91 16 28 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 29 H 0.10 2.71 8.11 -2.39 -0.02 2.69 16 30 H 0.13 2.49 7.40 -2.39 -0.02 2.47 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.82 6.43 -2.38 -0.02 1.80 16 33 H 0.10 1.77 6.44 -2.39 -0.02 1.75 16 34 H 0.03 1.05 7.48 -2.39 -0.02 1.03 16 35 H 0.03 1.35 7.84 -2.39 -0.02 1.33 16 36 H 0.37 21.98 7.06 -92.71 -0.65 21.32 16 37 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 38 H 0.13 2.70 6.59 -2.38 -0.02 2.68 16 39 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.08 2.15 7.67 -2.39 -0.02 2.13 16 Total: -1.00 -75.04 345.13 4.65 -70.39 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.33 Total: 37.69 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.76 Total: -4.63 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -3.43 Total: -125.05 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -75.04 4.65 -70.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485802983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.384 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds