Wall clock time and date at job start Mon Mar 30 2020 00:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00002 * 2 1 4 4 H 1.07999 * 119.99624 * 160.08962 * 3 2 1 5 5 C 1.38808 * 119.99943 * 340.08948 * 3 2 1 6 6 N 1.31617 * 120.00371 * 344.12820 * 5 3 2 7 7 Si 1.86805 * 119.99818 * 164.12255 * 5 3 2 8 8 H 1.48494 * 109.47170 * 265.41698 * 7 5 3 9 9 H 1.48502 * 109.47086 * 145.41656 * 7 5 3 10 10 H 1.48501 * 109.46957 * 25.41742 * 7 5 3 11 11 C 1.46499 * 119.99886 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47154 * 269.99892 * 11 2 1 13 13 N 1.46499 * 109.47154 * 179.97438 * 12 11 2 14 14 C 1.34777 * 119.99800 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99761 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46749 * 180.02562 * 16 14 13 18 18 H 1.08995 * 110.43566 * 54.30325 * 17 16 14 19 19 C 1.54891 * 110.48826 * 291.76010 * 17 16 14 20 20 C 1.54890 * 102.74944 * 203.38424 * 19 17 16 21 21 C 1.54265 * 104.19400 * 37.93929 * 20 19 17 22 22 H 1.09003 * 117.41169 * 116.37414 * 21 20 19 23 23 C 1.53001 * 118.20080 * 272.21199 * 21 20 19 24 24 C 1.52855 * 60.49955 * 93.59524 * 23 21 20 25 25 H 1.09003 * 119.72972 * 111.15048 * 24 23 21 26 26 H 1.08996 * 109.46962 * 85.44083 * 1 2 3 27 27 H 1.09001 * 109.46899 * 205.44180 * 1 2 3 28 28 H 1.08996 * 109.47041 * 325.44270 * 1 2 3 29 29 H 0.97002 * 120.00330 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.47551 * 29.99653 * 11 2 1 31 31 H 1.08995 * 109.47529 * 150.00189 * 11 2 1 32 32 H 1.08994 * 109.47187 * 300.00158 * 12 11 2 33 33 H 1.09005 * 109.46679 * 59.99956 * 12 11 2 34 34 H 0.96993 * 120.00285 * 359.97438 * 13 12 11 35 35 H 1.09000 * 109.47293 * 300.00035 * 16 14 13 36 36 H 1.09001 * 109.46708 * 60.00816 * 16 14 13 37 37 H 1.09007 * 110.75429 * 321.69658 * 19 17 16 38 38 H 1.08999 * 110.75548 * 85.06630 * 19 17 16 39 39 H 1.08990 * 110.48813 * 156.62139 * 20 19 17 40 40 H 1.09006 * 110.48362 * 279.26581 * 20 19 17 41 41 H 1.09004 * 117.46023 * 201.22313 * 23 21 20 42 42 H 1.09000 * 117.45925 * 346.02020 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1813 1.2138 0.3185 5 6 1.5179 2.3521 -0.4094 6 7 0.3892 2.2874 -1.0833 7 14 2.2696 4.0134 -0.0037 8 1 1.6673 4.5367 1.2487 9 1 2.0032 4.9618 -1.1150 10 1 3.7357 3.8623 0.1775 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4418 13 7 3.1845 -2.9801 1.4412 14 6 3.5218 -3.5640 2.6082 15 8 3.2189 -3.0390 3.6587 16 6 4.2742 -4.8698 2.6076 17 6 4.5293 -5.3119 4.0499 18 1 3.5936 -5.3493 4.6077 19 6 5.5341 -4.3564 4.7402 20 6 6.1212 -5.2369 5.8713 21 6 6.2447 -6.6369 5.2354 22 1 7.2464 -7.0537 5.1302 23 6 5.0366 -7.5730 5.3075 24 6 5.2294 -6.6863 4.0774 25 1 5.4837 -7.1392 3.1191 26 1 -0.3633 0.0817 -1.0244 27 1 -0.3633 -0.9280 0.4415 28 1 -0.3633 0.8463 0.5829 29 1 -0.0522 3.1023 -1.3697 30 1 1.6084 -2.0282 -0.5147 31 1 3.1499 -1.1383 -0.5143 32 1 3.0416 -0.9517 1.9559 33 1 1.5001 -1.8416 1.9555 34 1 3.4263 -3.4001 0.6011 35 1 3.6841 -5.6289 2.0941 36 1 5.2264 -4.7401 2.0932 37 1 6.3153 -4.0494 4.0448 38 1 5.0203 -3.4885 5.1535 39 1 7.1011 -4.8671 6.1729 40 1 5.4433 -5.2639 6.7245 41 1 5.2206 -8.6410 5.1908 42 1 4.2353 -7.3071 5.9969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492310146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:08 Heat of formation + Delta-G solvation = -1.789780 kcal Electronic energy + Delta-G solvation = -19927.851255 eV Core-core repulsion = 16908.788626 eV Total energy + Delta-G solvation = -3019.062628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16731 -38.86508 -36.06960 -34.13133 -32.78439 -31.36804 -30.55412 -28.21828 -25.92184 -25.46383 -23.19068 -22.70665 -20.66912 -20.60260 -19.96506 -19.59515 -16.92670 -16.56963 -16.20763 -15.58101 -15.28152 -14.87573 -14.62905 -14.01347 -13.46454 -13.41238 -13.17037 -13.10517 -12.95669 -12.47750 -12.33625 -11.95973 -11.38987 -11.23997 -11.16905 -10.89496 -10.86635 -10.83004 -10.75735 -10.57501 -10.34356 -10.32572 -9.95482 -9.90777 -9.79007 -9.53343 -8.66880 -8.54879 -6.83578 -5.75041 -3.19320 2.89623 3.38514 3.41190 3.44803 3.46559 3.49119 4.31236 4.48827 4.51748 4.57240 4.87397 4.97158 5.09516 5.14441 5.30513 5.33774 5.38450 5.41412 5.50622 5.57910 5.63399 5.69457 5.76703 5.82872 5.85788 5.94204 6.00078 6.06496 6.21485 6.26174 6.36480 6.62775 6.66269 6.76678 6.91444 7.37227 7.68581 7.80066 7.80488 8.35249 8.51381 9.20580 9.83921 10.30845 11.30545 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.003142 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.414108 B = 8908.179893 C = 9366.434029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.727 5.727 14 C 0.506 3.494 15 O -0.543 6.543 16 C -0.133 4.133 17 C -0.045 4.045 18 H 0.082 0.918 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.169 4.169 22 H 0.107 0.893 23 C -0.154 4.154 24 C -0.163 4.163 25 H 0.109 0.891 26 H 0.031 0.969 27 H -0.001 1.001 28 H 0.045 0.955 29 H 0.253 0.747 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 -19.089 8.047 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.378 5.378 14 C 0.292 3.708 15 O -0.420 6.420 16 C -0.173 4.173 17 C -0.064 4.064 18 H 0.101 0.899 19 C -0.153 4.153 20 C -0.135 4.135 21 C -0.187 4.187 22 H 0.125 0.875 23 C -0.191 4.191 24 C -0.181 4.181 25 H 0.127 0.873 26 H 0.049 0.951 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.336 -18.507 8.704 22.482 hybrid contribution 0.463 0.703 -0.329 0.904 sum 9.799 -17.804 8.375 21.980 Atomic orbital electron populations 1.20831 0.82248 0.95779 0.99459 1.43821 1.02007 1.00374 1.85929 1.19228 0.96715 0.84913 1.37936 0.91185 1.24955 0.97864 0.98415 0.98416 1.70102 1.19155 1.26824 1.39048 0.86225 0.78686 0.83957 0.77614 1.21446 1.21772 1.20402 1.20830 0.96636 0.89082 0.91904 1.22386 0.95627 0.83236 1.01887 1.46130 1.58388 1.25153 1.08126 1.20630 0.79672 0.86528 0.83980 1.90680 1.54770 1.65320 1.31251 1.21702 1.01281 0.95430 0.98864 1.21302 0.99011 0.91732 0.94382 0.89931 1.22756 0.97447 0.98320 0.96807 1.21972 1.00974 0.92534 0.97992 1.23296 0.94756 0.97654 1.02967 0.87531 1.23023 0.99516 0.96565 0.99961 1.23307 1.03310 0.97867 0.93644 0.87250 0.95114 0.98276 0.93640 0.93707 0.94135 0.93022 0.91665 0.92379 0.77093 0.89045 0.89025 0.91748 0.89969 0.91421 0.91531 0.88632 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.98 59.85 0.54 4.55 16 2 N -0.60 -15.09 2.93 -181.12 -0.53 -15.63 16 3 C -0.26 -7.15 9.67 -15.06 -0.15 -7.30 16 4 H 0.07 1.90 7.88 -52.49 -0.41 1.48 16 5 C 0.00 0.05 5.04 -17.43 -0.09 -0.04 16 6 N -0.91 -26.57 10.70 55.49 0.59 -25.97 16 7 Si 0.91 22.08 29.58 -169.99 -5.03 17.05 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.14 2.85 5.76 -4.04 -0.02 2.83 16 12 C 0.09 1.74 6.00 -4.04 -0.02 1.72 16 13 N -0.73 -10.32 5.56 -60.29 -0.33 -10.65 16 14 C 0.51 7.33 7.63 -10.98 -0.08 7.24 16 15 O -0.54 -10.09 14.61 5.56 0.08 -10.00 16 16 C -0.13 -1.33 5.18 -27.88 -0.14 -1.47 16 17 C -0.05 -0.48 2.25 -88.96 -0.20 -0.68 16 18 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 19 C -0.12 -1.29 5.69 -24.74 -0.14 -1.43 16 20 C -0.10 -0.91 6.63 -25.07 -0.17 -1.08 16 21 C -0.17 -1.43 6.95 -89.39 -0.62 -2.06 16 22 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.15 -1.23 10.06 -26.80 -0.27 -1.50 16 24 C -0.16 -1.41 6.37 -89.47 -0.57 -1.98 16 25 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.03 0.81 7.44 -51.93 -0.39 0.43 16 27 H 0.00 -0.03 8.04 -51.93 -0.42 -0.45 16 28 H 0.04 1.22 7.17 -51.93 -0.37 0.85 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 37 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 38 H 0.08 1.11 7.17 -51.93 -0.37 0.74 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -31.84 338.69 -9.38 -41.22 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.33 Total: 0.08 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.94 Total: -1.20 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.27 Total: -52.25 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.84 -9.38 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492310146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.435 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds