Wall clock time and date at job start Mon Mar 30 2020 00:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00002 * 2 1 4 4 H 1.07999 * 119.99624 * 160.08962 * 3 2 1 5 5 C 1.38808 * 119.99943 * 340.08948 * 3 2 1 6 6 N 1.31617 * 120.00371 * 344.12820 * 5 3 2 7 7 Si 1.86805 * 119.99818 * 164.12255 * 5 3 2 8 8 H 1.48494 * 109.47170 * 265.41698 * 7 5 3 9 9 H 1.48502 * 109.47086 * 145.41656 * 7 5 3 10 10 H 1.48501 * 109.46957 * 25.41742 * 7 5 3 11 11 C 1.46499 * 119.99886 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47154 * 269.99892 * 11 2 1 13 13 N 1.46499 * 109.47154 * 179.97438 * 12 11 2 14 14 C 1.34777 * 119.99800 * 179.97438 * 13 12 11 15 15 O 1.21276 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99761 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46749 * 180.02562 * 16 14 13 18 18 H 1.08995 * 110.43566 * 54.30325 * 17 16 14 19 19 C 1.54891 * 110.48826 * 291.76010 * 17 16 14 20 20 C 1.54890 * 102.74944 * 203.38424 * 19 17 16 21 21 C 1.54265 * 104.19400 * 37.93929 * 20 19 17 22 22 H 1.09003 * 117.41169 * 116.37414 * 21 20 19 23 23 C 1.53001 * 118.20080 * 272.21199 * 21 20 19 24 24 C 1.52855 * 60.49955 * 93.59524 * 23 21 20 25 25 H 1.09003 * 119.72972 * 111.15048 * 24 23 21 26 26 H 1.08996 * 109.46962 * 85.44083 * 1 2 3 27 27 H 1.09001 * 109.46899 * 205.44180 * 1 2 3 28 28 H 1.08996 * 109.47041 * 325.44270 * 1 2 3 29 29 H 0.97002 * 120.00330 * 180.02562 * 6 5 3 30 30 H 1.09005 * 109.47551 * 29.99653 * 11 2 1 31 31 H 1.08995 * 109.47529 * 150.00189 * 11 2 1 32 32 H 1.08994 * 109.47187 * 300.00158 * 12 11 2 33 33 H 1.09005 * 109.46679 * 59.99956 * 12 11 2 34 34 H 0.96993 * 120.00285 * 359.97438 * 13 12 11 35 35 H 1.09000 * 109.47293 * 300.00035 * 16 14 13 36 36 H 1.09001 * 109.46708 * 60.00816 * 16 14 13 37 37 H 1.09007 * 110.75429 * 321.69658 * 19 17 16 38 38 H 1.08999 * 110.75548 * 85.06630 * 19 17 16 39 39 H 1.08990 * 110.48813 * 156.62139 * 20 19 17 40 40 H 1.09006 * 110.48362 * 279.26581 * 20 19 17 41 41 H 1.09004 * 117.46023 * 201.22313 * 23 21 20 42 42 H 1.09000 * 117.45925 * 346.02020 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1813 1.2138 0.3185 5 6 1.5179 2.3521 -0.4094 6 7 0.3892 2.2874 -1.0833 7 14 2.2696 4.0134 -0.0037 8 1 1.6673 4.5367 1.2487 9 1 2.0032 4.9618 -1.1150 10 1 3.7357 3.8623 0.1775 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4418 13 7 3.1845 -2.9801 1.4412 14 6 3.5218 -3.5640 2.6082 15 8 3.2189 -3.0390 3.6587 16 6 4.2742 -4.8698 2.6076 17 6 4.5293 -5.3119 4.0499 18 1 3.5936 -5.3493 4.6077 19 6 5.5341 -4.3564 4.7402 20 6 6.1212 -5.2369 5.8713 21 6 6.2447 -6.6369 5.2354 22 1 7.2464 -7.0537 5.1302 23 6 5.0366 -7.5730 5.3075 24 6 5.2294 -6.6863 4.0774 25 1 5.4837 -7.1392 3.1191 26 1 -0.3633 0.0817 -1.0244 27 1 -0.3633 -0.9280 0.4415 28 1 -0.3633 0.8463 0.5829 29 1 -0.0522 3.1023 -1.3697 30 1 1.6084 -2.0282 -0.5147 31 1 3.1499 -1.1383 -0.5143 32 1 3.0416 -0.9517 1.9559 33 1 1.5001 -1.8416 1.9555 34 1 3.4263 -3.4001 0.6011 35 1 3.6841 -5.6289 2.0941 36 1 5.2264 -4.7401 2.0932 37 1 6.3153 -4.0494 4.0448 38 1 5.0203 -3.4885 5.1535 39 1 7.1011 -4.8671 6.1729 40 1 5.4433 -5.2639 6.7245 41 1 5.2206 -8.6410 5.1908 42 1 4.2353 -7.3071 5.9969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492310146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:08 Heat of formation + Delta-G solvation = -21.154489 kcal Electronic energy + Delta-G solvation = -19928.690971 eV Core-core repulsion = 16908.788626 eV Total energy + Delta-G solvation = -3019.902345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12100 -39.87836 -37.85665 -35.67314 -33.69285 -33.21809 -31.45059 -29.77392 -27.95290 -26.58411 -24.71131 -23.54767 -22.37624 -21.53071 -21.04338 -20.33478 -18.79352 -17.86834 -17.27845 -16.81022 -16.62753 -16.24589 -15.87579 -15.54212 -15.14023 -14.62073 -14.57478 -14.11744 -14.10637 -13.79289 -13.67325 -13.08215 -12.84839 -12.81362 -12.66704 -12.49134 -12.17567 -12.13742 -11.99670 -11.95956 -11.80921 -11.65303 -11.55468 -11.00811 -10.77835 -10.63575 -10.47807 -10.00983 -8.88780 -7.87334 -5.33672 1.44617 1.47428 1.55567 1.74420 2.23688 2.52680 2.77246 3.26737 3.53421 3.73309 3.77486 3.84610 4.04095 4.22057 4.28131 4.29708 4.36460 4.43466 4.54021 4.59255 4.65500 4.66123 4.75797 4.80706 4.92965 4.98369 5.01456 5.05730 5.10971 5.13779 5.23822 5.32417 5.38842 5.39424 5.53803 5.56749 5.59966 5.67679 6.27983 6.68005 7.10604 7.38100 7.82141 8.23869 9.16743 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.003142 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.414108 B = 8908.179893 C = 9366.434029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.267 4.267 4 H 0.071 0.929 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.267 1.267 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.715 5.715 14 C 0.502 3.498 15 O -0.590 6.590 16 C -0.121 4.121 17 C -0.048 4.048 18 H 0.057 0.943 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.170 4.170 22 H 0.122 0.878 23 C -0.152 4.152 24 C -0.160 4.160 25 H 0.131 0.869 26 H 0.010 0.990 27 H 0.031 0.969 28 H 0.015 0.985 29 H 0.249 0.751 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.416 0.584 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -21.303 7.554 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.397 4.397 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.368 5.368 14 C 0.290 3.710 15 O -0.470 6.470 16 C -0.160 4.160 17 C -0.066 4.066 18 H 0.076 0.924 19 C -0.156 4.156 20 C -0.136 4.136 21 C -0.188 4.188 22 H 0.140 0.860 23 C -0.189 4.189 24 C -0.178 4.178 25 H 0.149 0.851 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.253 0.747 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.113 -20.776 8.195 24.946 hybrid contribution -0.075 1.337 -0.123 1.344 sum 11.038 -19.439 8.073 23.767 Atomic orbital electron populations 1.20587 0.82531 0.96069 0.97889 1.44069 1.02305 1.01665 1.86102 1.19529 0.96914 0.86212 1.37000 0.91094 1.25712 0.98606 1.01628 0.98813 1.70242 1.20468 1.27256 1.40309 0.85254 0.78442 0.79895 0.76897 1.21726 1.21808 1.19190 1.20952 0.96816 0.87502 0.92690 1.21791 0.94703 0.84486 1.00165 1.45923 1.57794 1.23682 1.09412 1.21509 0.78968 0.87583 0.82966 1.90675 1.56541 1.66806 1.32979 1.21726 1.02163 0.93051 0.99059 1.21256 0.97908 0.93100 0.94383 0.92416 1.22720 0.97598 0.97670 0.97624 1.21957 1.01063 0.93318 0.97225 1.23332 0.95691 0.97016 1.02743 0.85968 1.23111 0.98925 0.97542 0.99346 1.23289 1.02900 0.96799 0.94790 0.85077 0.97160 0.95095 0.96596 0.94139 0.91617 0.92236 0.94711 0.94202 0.74714 0.86084 0.86371 0.91212 0.93384 0.90567 0.92386 0.86658 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.72 8.98 127.77 1.15 9.87 16 2 N -0.62 -31.07 2.93 -726.94 -2.13 -33.20 16 3 C -0.27 -14.78 9.67 84.03 0.81 -13.97 16 4 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 5 C -0.05 -2.97 5.04 84.86 0.43 -2.54 16 6 N -0.94 -55.76 10.70 21.65 0.23 -55.53 16 7 Si 0.97 45.74 29.58 68.60 2.03 47.77 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 C 0.15 5.62 5.76 86.38 0.50 6.12 16 12 C 0.12 4.20 6.00 86.38 0.52 4.72 16 13 N -0.72 -19.01 5.56 -463.05 -2.57 -21.58 16 14 C 0.50 13.93 7.63 87.66 0.67 14.60 16 15 O -0.59 -22.33 14.61 -3.02 -0.04 -22.38 16 16 C -0.12 -2.07 5.18 29.85 0.15 -1.92 16 17 C -0.05 -0.94 2.25 -9.72 -0.02 -0.96 16 18 H 0.06 1.42 7.96 -2.39 -0.02 1.40 16 19 C -0.12 -2.61 5.69 31.89 0.18 -2.43 16 20 C -0.10 -1.77 6.63 31.67 0.21 -1.56 16 21 C -0.17 -2.47 6.95 -10.00 -0.07 -2.54 16 22 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 23 C -0.15 -2.07 10.06 30.55 0.31 -1.76 16 24 C -0.16 -2.29 6.37 -10.05 -0.06 -2.35 16 25 H 0.13 1.36 8.05 -2.39 -0.02 1.34 16 26 H 0.01 0.54 7.44 -2.39 -0.02 0.53 16 27 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 28 H 0.02 0.85 7.17 -2.39 -0.02 0.83 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 31 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.42 7.75 8.47 -92.71 -0.79 6.97 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.07 1.42 8.00 -2.38 -0.02 1.41 16 38 H 0.05 1.37 7.17 -2.39 -0.02 1.35 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.59 338.69 2.49 -68.10 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.20 Total: 11.54 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 4.77 Total: 5.28 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.47 Total: -110.31 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.38 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.59 2.49 -68.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492310146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.948 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds