Wall clock time and date at job start Mon Mar 30 2020 00:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00401 * 2 1 4 4 H 1.07994 * 120.00171 * 200.36377 * 3 2 1 5 5 C 1.38820 * 119.99670 * 20.35922 * 3 2 1 6 6 N 1.31621 * 119.99906 * 14.98982 * 5 3 2 7 7 Si 1.86790 * 119.99760 * 194.98989 * 5 3 2 8 8 H 1.48504 * 109.47249 * 85.00698 * 7 5 3 9 9 H 1.48502 * 109.47041 * 205.00401 * 7 5 3 10 10 H 1.48498 * 109.47764 * 325.00161 * 7 5 3 11 11 C 1.46506 * 120.00029 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47028 * 269.99967 * 11 2 1 13 13 N 1.46500 * 109.46731 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99695 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00333 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00075 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47556 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43552 * 54.29498 * 17 16 14 19 19 C 1.54895 * 110.48532 * 291.75999 * 17 16 14 20 20 C 1.54897 * 102.74522 * 203.37777 * 19 17 16 21 21 C 1.54263 * 104.19676 * 37.94131 * 20 19 17 22 22 H 1.09004 * 117.41153 * 195.20131 * 21 20 19 23 23 C 1.52998 * 118.20215 * 40.56646 * 21 20 19 24 24 C 1.53307 * 60.40426 * 266.30913 * 23 21 20 25 25 H 1.08996 * 119.96945 * 248.83943 * 24 23 21 26 26 H 1.09004 * 109.46958 * 275.09736 * 1 2 3 27 27 H 1.08997 * 109.47125 * 35.09911 * 1 2 3 28 28 H 1.09003 * 109.47093 * 155.09560 * 1 2 3 29 29 H 0.96994 * 119.99873 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46859 * 150.00076 * 11 2 1 31 31 H 1.08999 * 109.46598 * 30.00228 * 11 2 1 32 32 H 1.08999 * 109.47130 * 299.99736 * 12 11 2 33 33 H 1.08997 * 109.47212 * 60.00325 * 12 11 2 34 34 H 0.97001 * 120.00537 * 359.97438 * 13 12 11 35 35 H 1.09001 * 109.46863 * 300.00215 * 16 14 13 36 36 H 1.09000 * 109.47364 * 59.99059 * 16 14 13 37 37 H 1.09001 * 110.74905 * 321.68898 * 19 17 16 38 38 H 1.08993 * 110.75845 * 84.88016 * 19 17 16 39 39 H 1.09000 * 110.47935 * 156.61958 * 20 19 17 40 40 H 1.09000 * 110.48216 * 279.25980 * 20 19 17 41 41 H 1.09000 * 117.45889 * 13.98177 * 23 21 20 42 42 H 1.09000 * 117.46035 * 158.80826 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3505 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2825 4.0126 0.0356 8 1 1.8682 4.4460 -1.3231 9 1 1.8224 5.0099 1.0350 10 1 3.7624 3.9034 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1855 -2.9782 1.4437 14 6 3.5221 -3.5615 2.6112 15 8 3.2186 -3.0361 3.6613 16 6 4.2767 -4.8660 2.6118 17 6 4.5317 -5.3071 4.0544 18 1 3.5957 -5.3456 4.6116 19 6 5.5345 -4.3496 4.7449 20 6 6.1223 -5.2287 5.8768 21 6 6.2485 -6.6288 5.2416 22 1 6.4010 -7.4730 5.9141 23 6 6.7392 -6.7253 3.7957 24 6 5.2339 -6.6804 4.0830 25 1 4.6189 -7.5623 3.9041 26 1 -0.3633 0.0913 1.0236 27 1 -0.3633 0.8408 -0.5909 28 1 -0.3633 -0.9321 -0.4328 29 1 -0.0518 3.0974 1.3771 30 1 3.1499 -1.1386 -0.5133 31 1 1.6084 -2.0286 -0.5130 32 1 3.0416 -0.9499 1.9567 33 1 1.5001 -1.8399 1.9571 34 1 3.4280 -3.3986 0.6039 35 1 3.6886 -5.6261 2.0976 36 1 5.2293 -4.7350 2.0985 37 1 6.3156 -4.0418 4.0497 38 1 5.0195 -3.4808 5.1546 39 1 7.1014 -4.8570 6.1788 40 1 5.4439 -5.2563 6.7295 41 1 7.1952 -5.8366 3.3593 42 1 7.1590 -7.6769 3.4698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492310148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:11 Heat of formation + Delta-G solvation = -0.765975 kcal Electronic energy + Delta-G solvation = -20069.424841 eV Core-core repulsion = 17050.406608 eV Total energy + Delta-G solvation = -3019.018233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25248 -38.82439 -36.02853 -34.06370 -32.44416 -31.30743 -30.42139 -28.18536 -25.91673 -25.44081 -23.66341 -22.94503 -20.62678 -20.19938 -19.80828 -18.99231 -17.09647 -16.73503 -16.18088 -15.57875 -15.24720 -14.71627 -14.50612 -14.02371 -13.68758 -13.40865 -13.28363 -12.99367 -12.63510 -12.38229 -12.25830 -11.79588 -11.46901 -11.20618 -11.05092 -10.98711 -10.87718 -10.83732 -10.73773 -10.57890 -10.27791 -10.20158 -9.98607 -9.88416 -9.78102 -9.39039 -8.59297 -8.52774 -6.83930 -5.74134 -3.19208 2.98600 3.38449 3.42889 3.45684 3.46789 3.62528 4.28138 4.49192 4.51121 4.74919 4.91266 4.95511 5.07056 5.18410 5.28572 5.40366 5.43771 5.45233 5.59023 5.60376 5.64474 5.74907 5.85120 5.89073 5.92376 6.02085 6.02991 6.08939 6.28485 6.29233 6.35961 6.70388 6.73443 6.78606 7.01921 7.35432 7.70901 7.80280 7.89303 8.36255 8.60797 9.20847 9.83845 10.31266 11.31078 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003312 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.442889 B = 8451.407421 C = 8785.085167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.728 5.728 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.132 4.132 17 C -0.045 4.045 18 H 0.088 0.912 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.168 4.168 22 H 0.106 0.894 23 C -0.155 4.155 24 C -0.163 4.163 25 H 0.109 0.891 26 H 0.030 0.970 27 H 0.045 0.955 28 H -0.001 1.001 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.394 0.606 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -18.731 3.083 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.379 5.379 14 C 0.289 3.711 15 O -0.419 6.419 16 C -0.172 4.172 17 C -0.064 4.064 18 H 0.106 0.894 19 C -0.161 4.161 20 C -0.134 4.134 21 C -0.186 4.186 22 H 0.124 0.876 23 C -0.192 4.192 24 C -0.181 4.181 25 H 0.127 0.873 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.017 0.983 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.227 0.773 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.645 -18.152 3.899 20.922 hybrid contribution 0.415 0.675 -0.462 0.917 sum 10.060 -17.476 3.437 20.455 Atomic orbital electron populations 1.20846 0.82186 0.95652 0.99636 1.43954 1.02062 1.00400 1.85524 1.19226 0.97154 0.84831 1.37812 0.91143 1.25012 0.97849 0.98531 0.98228 1.70089 1.18772 1.26976 1.39085 0.86239 0.78667 0.83827 0.77591 1.21407 1.21702 1.20515 1.20986 0.96292 0.88846 0.92301 1.22475 0.95696 0.83038 1.01909 1.46236 1.58416 1.25305 1.07982 1.20691 0.79756 0.86556 0.84077 1.90688 1.54699 1.65234 1.31289 1.21672 1.01167 0.95356 0.99024 1.21308 0.99056 0.91755 0.94262 0.89408 1.22593 0.97823 0.98430 0.97242 1.21938 1.00687 0.92672 0.98129 1.23164 1.05400 0.99150 0.90854 0.87571 1.22932 0.95721 1.02864 0.97645 1.23256 0.91307 0.98768 1.04779 0.87312 0.95131 0.93605 0.98251 0.93628 0.93374 0.94024 0.91484 0.92353 0.77306 0.89186 0.89227 0.91861 0.89756 0.91706 0.90968 0.88913 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 16 2 N -0.60 -15.03 2.93 -181.12 -0.53 -15.56 16 3 C -0.26 -7.20 9.68 -15.06 -0.15 -7.34 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 5 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 6 N -0.90 -26.70 10.67 55.49 0.59 -26.11 16 7 Si 0.91 22.03 29.58 -169.99 -5.03 17.00 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 12 C 0.09 1.86 6.00 -4.04 -0.02 1.84 16 13 N -0.73 -10.91 5.56 -60.30 -0.33 -11.24 16 14 C 0.50 7.73 7.63 -10.98 -0.08 7.64 16 15 O -0.54 -10.69 14.61 5.56 0.08 -10.61 16 16 C -0.13 -1.41 5.24 -27.88 -0.15 -1.55 16 17 C -0.05 -0.50 2.39 -88.96 -0.21 -0.71 16 18 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 19 C -0.12 -1.45 5.22 -24.73 -0.13 -1.58 16 20 C -0.10 -0.95 6.77 -25.07 -0.17 -1.12 16 21 C -0.17 -1.48 7.05 -89.39 -0.63 -2.11 16 22 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.15 -1.25 9.83 -26.57 -0.26 -1.51 16 24 C -0.16 -1.46 6.45 -89.23 -0.58 -2.04 16 25 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.82 7.40 -51.93 -0.38 0.44 16 27 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 28 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 31 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 32 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.39 4.49 8.47 -40.82 -0.35 4.14 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.06 0.72 7.24 -51.93 -0.38 0.34 16 38 H 0.08 1.21 7.16 -51.93 -0.37 0.83 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.78 7.21 -51.93 -0.37 0.40 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -32.00 336.55 -9.32 -41.32 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.22 Total: 1.25 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.95 Total: -1.12 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.27 Total: -52.91 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.00 -9.32 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492310148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.551 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds