Wall clock time and date at job start Mon Mar 30 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00401 * 2 1 4 4 H 1.07994 * 120.00171 * 200.36377 * 3 2 1 5 5 C 1.38820 * 119.99670 * 20.35922 * 3 2 1 6 6 N 1.31621 * 119.99906 * 14.98982 * 5 3 2 7 7 Si 1.86790 * 119.99760 * 194.98989 * 5 3 2 8 8 H 1.48504 * 109.47249 * 85.00698 * 7 5 3 9 9 H 1.48502 * 109.47041 * 205.00401 * 7 5 3 10 10 H 1.48498 * 109.47764 * 325.00161 * 7 5 3 11 11 C 1.46506 * 120.00029 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47028 * 269.99967 * 11 2 1 13 13 N 1.46500 * 109.46731 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99695 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00333 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00075 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47556 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43552 * 54.29498 * 17 16 14 19 19 C 1.54895 * 110.48532 * 291.75999 * 17 16 14 20 20 C 1.54897 * 102.74522 * 203.37777 * 19 17 16 21 21 C 1.54263 * 104.19676 * 37.94131 * 20 19 17 22 22 H 1.09004 * 117.41153 * 195.20131 * 21 20 19 23 23 C 1.52998 * 118.20215 * 40.56646 * 21 20 19 24 24 C 1.53307 * 60.40426 * 266.30913 * 23 21 20 25 25 H 1.08996 * 119.96945 * 248.83943 * 24 23 21 26 26 H 1.09004 * 109.46958 * 275.09736 * 1 2 3 27 27 H 1.08997 * 109.47125 * 35.09911 * 1 2 3 28 28 H 1.09003 * 109.47093 * 155.09560 * 1 2 3 29 29 H 0.96994 * 119.99873 * 179.97438 * 6 5 3 30 30 H 1.08997 * 109.46859 * 150.00076 * 11 2 1 31 31 H 1.08999 * 109.46598 * 30.00228 * 11 2 1 32 32 H 1.08999 * 109.47130 * 299.99736 * 12 11 2 33 33 H 1.08997 * 109.47212 * 60.00325 * 12 11 2 34 34 H 0.97001 * 120.00537 * 359.97438 * 13 12 11 35 35 H 1.09001 * 109.46863 * 300.00215 * 16 14 13 36 36 H 1.09000 * 109.47364 * 59.99059 * 16 14 13 37 37 H 1.09001 * 110.74905 * 321.68898 * 19 17 16 38 38 H 1.08993 * 110.75845 * 84.88016 * 19 17 16 39 39 H 1.09000 * 110.47935 * 156.61958 * 20 19 17 40 40 H 1.09000 * 110.48216 * 279.25980 * 20 19 17 41 41 H 1.09000 * 117.45889 * 13.98177 * 23 21 20 42 42 H 1.09000 * 117.46035 * 158.80826 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3505 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2825 4.0126 0.0356 8 1 1.8682 4.4460 -1.3231 9 1 1.8224 5.0099 1.0350 10 1 3.7624 3.9034 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1855 -2.9782 1.4437 14 6 3.5221 -3.5615 2.6112 15 8 3.2186 -3.0361 3.6613 16 6 4.2767 -4.8660 2.6118 17 6 4.5317 -5.3071 4.0544 18 1 3.5957 -5.3456 4.6116 19 6 5.5345 -4.3496 4.7449 20 6 6.1223 -5.2287 5.8768 21 6 6.2485 -6.6288 5.2416 22 1 6.4010 -7.4730 5.9141 23 6 6.7392 -6.7253 3.7957 24 6 5.2339 -6.6804 4.0830 25 1 4.6189 -7.5623 3.9041 26 1 -0.3633 0.0913 1.0236 27 1 -0.3633 0.8408 -0.5909 28 1 -0.3633 -0.9321 -0.4328 29 1 -0.0518 3.0974 1.3771 30 1 3.1499 -1.1386 -0.5133 31 1 1.6084 -2.0286 -0.5130 32 1 3.0416 -0.9499 1.9567 33 1 1.5001 -1.8399 1.9571 34 1 3.4280 -3.3986 0.6039 35 1 3.6886 -5.6261 2.0976 36 1 5.2293 -4.7350 2.0985 37 1 6.3156 -4.0418 4.0497 38 1 5.0195 -3.4808 5.1546 39 1 7.1014 -4.8570 6.1788 40 1 5.4439 -5.2563 6.7295 41 1 7.1952 -5.8366 3.3593 42 1 7.1590 -7.6769 3.4698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492310148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:10 Heat of formation + Delta-G solvation = -20.683821 kcal Electronic energy + Delta-G solvation = -20070.288544 eV Core-core repulsion = 17050.406608 eV Total energy + Delta-G solvation = -3019.881935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22111 -39.95020 -37.84427 -35.66630 -33.50341 -33.10424 -31.33294 -29.77503 -27.94966 -26.59744 -24.72607 -24.31409 -22.38421 -21.46980 -20.56666 -19.84906 -18.81219 -18.10661 -17.18047 -16.95372 -16.65276 -16.56562 -15.63669 -15.49020 -15.11369 -14.73665 -14.50360 -14.35141 -14.03377 -13.89953 -13.39109 -13.14661 -12.80875 -12.68797 -12.64799 -12.47606 -12.24287 -12.10046 -12.00859 -11.94665 -11.79826 -11.76629 -11.56670 -10.90364 -10.82856 -10.66924 -10.38185 -10.01177 -8.89940 -7.86460 -5.33995 1.46089 1.47288 1.55748 1.74746 2.25625 2.52574 2.84353 3.28187 3.50007 3.71904 3.74892 3.95112 4.02450 4.17539 4.23594 4.29783 4.33973 4.40987 4.49494 4.62049 4.65089 4.72206 4.80736 4.82357 4.92154 4.97560 5.04865 5.07509 5.11987 5.17951 5.29982 5.32447 5.37712 5.41146 5.46900 5.53471 5.62372 5.69806 6.28644 6.69304 7.10767 7.40082 7.82548 8.24247 9.17414 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033467 B = 0.003312 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.442889 B = 8451.407421 C = 8785.085167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.714 5.714 14 C 0.498 3.502 15 O -0.592 6.592 16 C -0.118 4.118 17 C -0.047 4.047 18 H 0.064 0.936 19 C -0.126 4.126 20 C -0.097 4.097 21 C -0.173 4.173 22 H 0.120 0.880 23 C -0.142 4.142 24 C -0.161 4.161 25 H 0.124 0.876 26 H -0.002 1.002 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.248 0.752 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.029 0.971 34 H 0.417 0.583 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 -21.144 1.425 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.207 1.207 9 H -0.225 1.225 10 H -0.193 1.193 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.286 3.714 15 O -0.473 6.473 16 C -0.158 4.158 17 C -0.066 4.066 18 H 0.082 0.918 19 C -0.164 4.164 20 C -0.134 4.134 21 C -0.191 4.191 22 H 0.138 0.862 23 C -0.179 4.179 24 C -0.179 4.179 25 H 0.142 0.858 26 H 0.016 0.984 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.254 0.746 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.607 -20.622 2.196 23.766 hybrid contribution -0.160 1.360 0.083 1.372 sum 11.448 -19.262 2.279 22.523 Atomic orbital electron populations 1.20605 0.82471 0.96513 0.97548 1.44217 1.02380 1.01692 1.85557 1.19611 0.97451 0.86042 1.36690 0.90529 1.25828 0.98606 1.02041 0.98662 1.70268 1.20334 1.27296 1.40679 0.85220 0.78307 0.79402 0.77138 1.20727 1.22475 1.19334 1.21141 0.97114 0.87502 0.92267 1.21851 0.94064 0.84212 1.01005 1.45968 1.57712 1.23659 1.09371 1.21636 0.79011 0.87681 0.83037 1.90683 1.56592 1.66830 1.33182 1.21691 1.01912 0.92810 0.99384 1.21254 0.98065 0.93156 0.94145 0.91775 1.22544 0.97966 0.97731 0.98139 1.21913 1.00672 0.93452 0.97413 1.23214 1.05902 0.98489 0.91531 0.86224 1.23038 0.94556 1.03859 0.96454 1.23193 0.91856 0.97562 1.05303 0.85808 0.98358 0.96055 0.94362 0.94285 0.91697 0.90640 0.95651 0.95227 0.74619 0.86079 0.86693 0.91404 0.93462 0.91115 0.91586 0.89109 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.68 9.02 127.77 1.15 9.83 16 2 N -0.62 -30.87 2.93 -726.93 -2.13 -33.00 16 3 C -0.27 -14.80 9.68 84.04 0.81 -13.99 16 4 H 0.08 4.05 7.86 -2.91 -0.02 4.03 16 5 C -0.06 -3.22 5.06 84.86 0.43 -2.79 16 6 N -0.94 -57.13 10.67 21.65 0.23 -56.90 16 7 Si 0.97 45.77 29.58 68.60 2.03 47.80 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 C 0.15 5.57 5.82 86.38 0.50 6.07 16 12 C 0.12 4.59 6.00 86.38 0.52 5.10 16 13 N -0.71 -20.32 5.56 -463.07 -2.57 -22.89 16 14 C 0.50 14.95 7.63 87.66 0.67 15.62 16 15 O -0.59 -24.28 14.61 -3.02 -0.04 -24.33 16 16 C -0.12 -2.22 5.24 29.85 0.16 -2.06 16 17 C -0.05 -0.99 2.39 -9.72 -0.02 -1.02 16 18 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 19 C -0.13 -2.97 5.22 31.89 0.17 -2.80 16 20 C -0.10 -1.85 6.77 31.67 0.21 -1.64 16 21 C -0.17 -2.64 7.05 -10.00 -0.07 -2.71 16 22 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 23 C -0.14 -1.79 9.83 30.70 0.30 -1.49 16 24 C -0.16 -2.42 6.45 -9.89 -0.06 -2.48 16 25 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.00 -0.11 7.40 -2.39 -0.02 -0.13 16 27 H 0.02 1.13 7.21 -2.39 -0.02 1.11 16 28 H 0.04 1.57 7.84 -2.39 -0.02 1.56 16 29 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 31 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 32 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 8.10 8.47 -92.71 -0.79 7.32 16 35 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.65 8.06 -2.39 -0.02 1.63 16 37 H 0.07 1.49 7.24 -2.39 -0.02 1.47 16 38 H 0.05 1.45 7.16 -2.39 -0.02 1.43 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.20 7.21 -2.39 -0.02 1.19 16 42 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.77 336.55 2.49 -70.28 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.20 Total: 13.38 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.77 Total: 5.65 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.47 Total: -112.79 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.77 2.49 -70.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492310148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.600 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds