Wall clock time and date at job start Mon Mar 30 2020 00:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.52996 * 109.47563 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47538 * 179.97438 * 4 3 2 6 6 C 1.36743 * 127.13890 * 273.70765 * 5 4 3 7 7 C 1.50695 * 126.34448 * 359.94438 * 6 5 4 8 8 N 1.30288 * 107.30483 * 179.97438 * 6 5 4 9 9 N 1.28525 * 110.05543 * 359.72738 * 8 6 5 10 10 C 1.31214 * 109.86067 * 0.45497 * 9 8 6 11 11 N 1.38580 * 126.47174 * 179.82378 * 10 9 8 12 12 C 1.46891 * 111.00039 * 306.02650 * 11 10 9 13 13 C 1.46897 * 111.00402 * 69.98577 * 11 10 9 14 14 H 1.09005 * 109.47007 * 54.99540 * 13 11 10 15 15 C 1.53003 * 109.47092 * 295.00125 * 13 11 10 16 16 C 1.50695 * 109.47465 * 174.99734 * 13 11 10 17 17 H 1.08003 * 120.00078 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00069 * 180.02562 * 16 13 11 19 19 N 1.31520 * 120.00099 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 120.00024 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47029 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46972 * 119.99599 * 20 18 16 23 23 H 1.48498 * 109.46827 * 239.99682 * 20 18 16 24 24 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46705 * 300.00211 * 1 2 3 26 26 H 1.08998 * 109.47207 * 59.99924 * 1 2 3 27 27 H 1.08994 * 109.47308 * 239.99620 * 2 1 3 28 28 H 1.09008 * 109.47473 * 119.99625 * 2 1 3 29 29 H 1.09002 * 109.47056 * 59.99874 * 3 2 1 30 30 H 1.08998 * 109.47088 * 300.00148 * 3 2 1 31 31 H 1.09002 * 109.47006 * 59.99881 * 4 3 2 32 32 H 1.08998 * 109.47071 * 300.00197 * 4 3 2 33 33 H 1.08994 * 109.47844 * 89.99928 * 7 6 5 34 34 H 1.09001 * 109.47012 * 210.00053 * 7 6 5 35 35 H 1.09007 * 109.47410 * 329.99436 * 7 6 5 36 36 H 1.08999 * 109.47286 * 54.17738 * 12 11 10 37 37 H 1.08999 * 109.47286 * 174.17744 * 12 11 10 38 38 H 1.09001 * 109.47300 * 294.17972 * 12 11 10 39 39 H 1.09001 * 109.46854 * 300.00085 * 15 13 11 40 40 H 1.08996 * 109.47101 * 59.99223 * 15 13 11 41 41 H 1.08997 * 109.47350 * 180.02562 * 15 13 11 42 42 H 0.97000 * 119.99914 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2675 3.6250 -1.0882 7 6 4.0384 3.2510 -2.5299 8 7 4.7023 4.7714 -0.6475 9 7 4.7761 4.7512 0.6355 10 6 4.3983 3.5778 1.0853 11 7 4.3482 3.1814 2.4122 12 6 5.6421 3.3940 3.0743 13 6 3.2699 3.8753 3.1287 14 1 2.3261 3.7166 2.6069 15 6 3.5761 5.3734 3.1843 16 6 3.1667 3.3313 4.5303 17 1 3.8356 2.5486 4.8563 18 6 2.2183 3.8328 5.3963 19 7 1.4040 4.7863 4.9994 20 14 2.0908 3.1589 7.1339 21 1 3.1135 2.1004 7.3305 22 1 2.3196 4.2560 8.1083 23 1 0.7377 2.5845 7.3440 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.0160 3.5019 -2.8123 34 1 4.7353 3.8001 -3.1629 35 1 4.1982 2.1802 -2.6573 36 1 5.9500 4.4317 2.9455 37 1 5.5471 3.1726 4.1373 38 1 6.3895 2.7357 2.6314 39 1 4.5199 5.5321 3.7060 40 1 3.6508 5.7668 2.1706 41 1 2.7762 5.8883 3.7164 42 1 0.7365 5.1388 5.6086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500458729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:41 Heat of formation + Delta-G solvation = 75.978971 kcal Electronic energy + Delta-G solvation = -21441.845034 eV Core-core repulsion = 18458.447463 eV Total energy + Delta-G solvation = -2983.397571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.44406 -37.19927 -36.32498 -33.56405 -32.93259 -31.37878 -29.09662 -28.59862 -27.04319 -25.25713 -25.10487 -24.06327 -21.43293 -21.25322 -20.36478 -19.34481 -16.61462 -16.18018 -15.92290 -15.52337 -15.21354 -14.66627 -14.06130 -13.90705 -13.66574 -13.14070 -13.08991 -12.81090 -12.67593 -12.36379 -12.24078 -11.75066 -11.44497 -11.38280 -11.26134 -11.22492 -10.95458 -10.93041 -10.77901 -10.60955 -10.51719 -10.13991 -10.12636 -9.85434 -9.59199 -8.88570 -8.46970 -8.36700 -7.67327 -6.07913 -4.14091 2.23962 2.76151 3.25799 3.33801 3.36524 3.39721 4.32996 4.62614 4.66631 4.72768 4.86875 5.04785 5.07980 5.16705 5.24230 5.42368 5.49213 5.55806 5.69155 5.73098 5.76137 5.86250 5.90679 6.03279 6.14263 6.16798 6.29314 6.35227 6.41735 6.55733 6.65094 6.86650 7.08526 7.11275 7.18713 7.55290 7.66272 7.76576 7.93772 8.26370 8.48336 8.89528 9.31414 9.50721 10.98812 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.007019 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.363152 B = 3988.461506 C = 5130.938367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.135 4.135 4 C 0.116 3.884 5 N -0.470 5.470 6 C 0.152 3.848 7 C -0.057 4.057 8 N -0.297 5.297 9 N -0.316 5.316 10 C 0.375 3.625 11 N -0.470 5.470 12 C 0.045 3.955 13 C 0.226 3.774 14 H 0.035 0.965 15 C -0.173 4.173 16 C -0.507 4.507 17 H 0.066 0.934 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.085 0.915 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -9.384 -11.608 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.174 4.174 4 C -0.007 4.007 5 N -0.163 5.163 6 C -0.115 4.115 7 C -0.116 4.116 8 N -0.138 5.138 9 N -0.159 5.159 10 C 0.019 3.981 11 N -0.196 5.196 12 C -0.103 4.103 13 C 0.122 3.878 14 H 0.053 0.947 15 C -0.233 4.233 16 C -0.545 4.545 17 H 0.084 0.916 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.899 -8.369 -11.517 14.362 hybrid contribution -0.565 -0.823 1.033 1.437 sum 1.335 -9.192 -10.483 14.006 Atomic orbital electron populations 1.21748 0.95495 1.01494 1.02203 1.21400 0.96327 0.95672 1.02093 1.21975 0.93642 0.98058 1.03691 1.21815 0.95343 0.79238 1.04325 1.46401 1.49896 1.13605 1.06424 1.24599 1.05482 0.89619 0.91779 1.20071 1.03396 1.01759 0.86363 1.73928 1.17736 1.17926 1.04228 1.74714 1.22188 1.16496 1.02481 1.22907 0.98828 0.86624 0.89694 1.59391 1.08103 1.57673 0.94472 1.22244 0.87884 0.99738 1.00426 1.19377 0.86409 0.89318 0.92734 0.94700 1.22443 1.01497 0.99793 0.99536 1.21044 1.17758 1.20332 0.95390 0.91572 1.24911 0.95448 0.94917 0.98719 1.69925 1.20062 1.26837 1.35843 0.86421 0.77909 0.78837 0.84128 1.19653 1.20992 1.21046 0.92764 0.92182 0.92942 0.92176 0.91320 0.90108 0.91818 0.89821 0.87880 0.90246 0.89254 0.91026 0.94164 0.89112 0.93821 0.94979 0.94781 0.89595 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.14 -1.76 5.54 -26.73 -0.15 -1.90 16 4 C 0.12 1.54 5.99 -4.04 -0.02 1.51 16 5 N -0.47 -8.15 2.81 -114.09 -0.32 -8.47 16 6 C 0.15 2.56 8.07 -154.02 -1.24 1.32 16 7 C -0.06 -0.61 10.25 36.00 0.37 -0.24 16 8 N -0.30 -6.16 12.18 32.99 0.40 -5.76 16 9 N -0.32 -7.20 9.70 30.31 0.29 -6.91 16 10 C 0.38 7.97 6.21 -318.88 -1.98 5.99 16 11 N -0.47 -10.35 4.77 -176.09 -0.84 -11.19 16 12 C 0.04 0.91 8.65 60.06 0.52 1.43 16 13 C 0.23 5.74 2.31 -68.87 -0.16 5.58 16 14 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 15 C -0.17 -4.49 8.20 37.16 0.30 -4.19 16 16 C -0.51 -13.40 7.80 -34.44 -0.27 -13.67 16 17 H 0.07 1.72 6.82 -52.48 -0.36 1.36 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.83 7.37 -51.93 -0.38 0.45 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.59 7.35 -51.93 -0.38 0.21 16 36 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 37 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.80 6.61 -51.93 -0.34 0.46 16 40 H 0.03 0.88 5.92 -51.93 -0.31 0.57 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -31.20 334.78 -9.29 -40.49 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.96 Total: 0.67 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.52 Total: -5.18 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.16 Total: -56.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.20 -9.29 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500458729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.466 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds