Wall clock time and date at job start Mon Mar 30 2020 00:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.52996 * 109.47563 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47538 * 179.97438 * 4 3 2 6 6 C 1.36743 * 127.13890 * 273.70765 * 5 4 3 7 7 C 1.50695 * 126.34448 * 359.94438 * 6 5 4 8 8 N 1.30288 * 107.30483 * 179.97438 * 6 5 4 9 9 N 1.28525 * 110.05543 * 359.72738 * 8 6 5 10 10 C 1.31214 * 109.86067 * 0.45497 * 9 8 6 11 11 N 1.38580 * 126.47174 * 179.82378 * 10 9 8 12 12 C 1.46891 * 111.00039 * 306.02650 * 11 10 9 13 13 C 1.46897 * 111.00402 * 69.98577 * 11 10 9 14 14 H 1.09005 * 109.47007 * 54.99540 * 13 11 10 15 15 C 1.53003 * 109.47092 * 295.00125 * 13 11 10 16 16 C 1.50695 * 109.47465 * 174.99734 * 13 11 10 17 17 H 1.08003 * 120.00078 * 0.02562 * 16 13 11 18 18 C 1.37874 * 120.00069 * 180.02562 * 16 13 11 19 19 N 1.31520 * 120.00099 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 120.00024 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47029 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46972 * 119.99599 * 20 18 16 23 23 H 1.48498 * 109.46827 * 239.99682 * 20 18 16 24 24 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46705 * 300.00211 * 1 2 3 26 26 H 1.08998 * 109.47207 * 59.99924 * 1 2 3 27 27 H 1.08994 * 109.47308 * 239.99620 * 2 1 3 28 28 H 1.09008 * 109.47473 * 119.99625 * 2 1 3 29 29 H 1.09002 * 109.47056 * 59.99874 * 3 2 1 30 30 H 1.08998 * 109.47088 * 300.00148 * 3 2 1 31 31 H 1.09002 * 109.47006 * 59.99881 * 4 3 2 32 32 H 1.08998 * 109.47071 * 300.00197 * 4 3 2 33 33 H 1.08994 * 109.47844 * 89.99928 * 7 6 5 34 34 H 1.09001 * 109.47012 * 210.00053 * 7 6 5 35 35 H 1.09007 * 109.47410 * 329.99436 * 7 6 5 36 36 H 1.08999 * 109.47286 * 54.17738 * 12 11 10 37 37 H 1.08999 * 109.47286 * 174.17744 * 12 11 10 38 38 H 1.09001 * 109.47300 * 294.17972 * 12 11 10 39 39 H 1.09001 * 109.46854 * 300.00085 * 15 13 11 40 40 H 1.08996 * 109.47101 * 59.99223 * 15 13 11 41 41 H 1.08997 * 109.47350 * 180.02562 * 15 13 11 42 42 H 0.97000 * 119.99914 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2675 3.6250 -1.0882 7 6 4.0384 3.2510 -2.5299 8 7 4.7023 4.7714 -0.6475 9 7 4.7761 4.7512 0.6355 10 6 4.3983 3.5778 1.0853 11 7 4.3482 3.1814 2.4122 12 6 5.6421 3.3940 3.0743 13 6 3.2699 3.8753 3.1287 14 1 2.3261 3.7166 2.6069 15 6 3.5761 5.3734 3.1843 16 6 3.1667 3.3313 4.5303 17 1 3.8356 2.5486 4.8563 18 6 2.2183 3.8328 5.3963 19 7 1.4040 4.7863 4.9994 20 14 2.0908 3.1589 7.1339 21 1 3.1135 2.1004 7.3305 22 1 2.3196 4.2560 8.1083 23 1 0.7377 2.5845 7.3440 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.0160 3.5019 -2.8123 34 1 4.7353 3.8001 -3.1629 35 1 4.1982 2.1802 -2.6573 36 1 5.9500 4.4317 2.9455 37 1 5.5471 3.1726 4.1373 38 1 6.3895 2.7357 2.6314 39 1 4.5199 5.5321 3.7060 40 1 3.6508 5.7668 2.1706 41 1 2.7762 5.8883 3.7164 42 1 0.7365 5.1388 5.6086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500458729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:41 Heat of formation + Delta-G solvation = 58.890595 kcal Electronic energy + Delta-G solvation = -21442.586042 eV Core-core repulsion = 18458.447463 eV Total energy + Delta-G solvation = -2984.138579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.91751 -39.00643 -37.44785 -34.92455 -34.69881 -32.68653 -30.79621 -29.94777 -28.42309 -27.21366 -26.89356 -25.16832 -23.21587 -22.19742 -21.71094 -21.00049 -18.43553 -17.75692 -17.56982 -16.83465 -16.52643 -16.43660 -15.49863 -15.28674 -14.88275 -14.74295 -14.32060 -14.00545 -13.78683 -13.61667 -13.38752 -13.31890 -13.10705 -13.01447 -12.74531 -12.64153 -12.55313 -12.37580 -12.31689 -12.12024 -12.03020 -11.93273 -11.57247 -11.41919 -11.02053 -10.83952 -10.55106 -9.92309 -9.44727 -8.15508 -6.29239 0.80408 1.41500 1.43435 1.45955 1.57206 1.85876 2.41106 3.06706 3.15271 3.53852 3.67759 3.83464 4.05746 4.16157 4.18970 4.29162 4.40940 4.52696 4.62110 4.64135 4.70734 4.71939 4.74127 4.91496 4.94461 4.97046 5.00271 5.06079 5.08147 5.10584 5.15916 5.22928 5.35541 5.42369 5.44564 5.60043 5.65589 5.88259 6.03372 6.19362 6.64879 6.80782 7.39946 7.80419 8.91709 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.007019 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.363152 B = 3988.461506 C = 5130.938367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.127 4.127 4 C 0.111 3.889 5 N -0.467 5.467 6 C 0.176 3.824 7 C -0.057 4.057 8 N -0.342 5.342 9 N -0.351 5.351 10 C 0.349 3.651 11 N -0.465 5.465 12 C 0.050 3.950 13 C 0.240 3.760 14 H -0.004 1.004 15 C -0.155 4.155 16 C -0.516 4.516 17 H 0.071 0.929 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.281 1.281 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.025 0.975 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -11.953 -13.125 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.166 4.166 4 C -0.011 4.011 5 N -0.160 5.160 6 C -0.092 4.092 7 C -0.116 4.116 8 N -0.183 5.183 9 N -0.194 5.194 10 C -0.009 4.009 11 N -0.191 5.191 12 C -0.098 4.098 13 C 0.134 3.866 14 H 0.014 0.986 15 C -0.215 4.215 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.207 1.207 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.380 -10.961 -13.053 17.210 hybrid contribution -0.728 -0.029 1.357 1.540 sum 1.652 -10.990 -11.697 16.135 Atomic orbital electron populations 1.21766 0.95679 1.02350 1.01297 1.21387 0.96112 0.93797 1.03488 1.21897 0.93565 0.99541 1.01576 1.22177 0.95291 0.77294 1.06289 1.46651 1.49067 1.14849 1.05390 1.25787 1.01605 0.88036 0.93803 1.20440 1.04791 1.04333 0.82023 1.73843 1.20623 1.20375 1.03441 1.74558 1.23174 1.17748 1.03929 1.22846 1.00720 0.87406 0.89924 1.59266 1.07805 1.56879 0.95103 1.22232 0.87731 0.99486 1.00316 1.18995 0.86125 0.89002 0.92516 0.98614 1.22239 1.00337 1.00301 0.98592 1.21289 1.17882 1.20405 0.95863 0.91044 1.25768 0.94977 0.95057 1.02802 1.70070 1.20680 1.28063 1.37284 0.85353 0.78107 0.78335 0.78925 1.18352 1.20853 1.20732 0.91004 0.94876 0.92124 0.88663 0.91913 0.95289 0.90858 0.84888 0.88803 0.88488 0.87913 0.87355 0.95640 0.89510 0.91114 0.94912 0.95452 0.92109 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.11 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.13 -3.16 5.54 30.59 0.17 -2.99 16 4 C 0.11 2.68 5.99 86.38 0.52 3.20 16 5 N -0.47 -15.69 2.81 -514.88 -1.45 -17.14 16 6 C 0.18 5.58 8.07 137.64 1.11 6.69 16 7 C -0.06 -0.98 10.25 71.23 0.73 -0.25 16 8 N -0.34 -14.21 12.18 -49.54 -0.60 -14.82 16 9 N -0.35 -16.43 9.70 -58.01 -0.56 -16.99 16 10 C 0.35 15.04 6.21 260.11 1.62 16.66 16 11 N -0.47 -20.95 4.77 -711.03 -3.39 -24.34 16 12 C 0.05 2.04 8.65 127.69 1.11 3.14 16 13 C 0.24 12.69 2.31 44.17 0.10 12.79 16 14 H 0.00 -0.24 8.11 -2.38 -0.02 -0.26 16 15 C -0.16 -8.45 8.20 71.98 0.59 -7.86 16 16 C -0.52 -27.88 7.80 25.60 0.20 -27.69 16 17 H 0.07 3.72 6.82 -2.91 -0.02 3.70 16 18 C 0.01 0.71 5.30 84.65 0.45 1.16 16 19 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 20 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.13 1.94 7.37 -2.39 -0.02 1.92 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.12 7.35 -2.38 -0.02 1.11 16 36 H 0.02 1.10 6.57 -2.39 -0.02 1.08 16 37 H 0.09 3.57 6.28 -2.39 -0.01 3.56 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.03 1.71 6.61 -2.39 -0.02 1.69 16 40 H 0.03 1.48 5.92 -2.39 -0.01 1.47 16 41 H 0.06 3.59 6.07 -2.39 -0.01 3.57 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.92 334.78 4.74 -67.18 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.99 Total: 13.89 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 7.49 Total: 0.77 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.76 Total: -126.70 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -71.92 4.74 -67.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500458729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.072 kcal (2) G-P(sol) polarization free energy of solvation -71.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds