Wall clock time and date at job start Mon Mar 30 2020 00:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99919 * 2 1 4 4 C 1.52998 * 109.46959 * 124.99598 * 3 2 1 5 5 C 1.50702 * 109.47140 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99748 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00043 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.62990 * 0.02562 * 7 5 4 9 9 C 1.53194 * 108.77334 * 126.37126 * 8 7 5 10 10 C 1.53030 * 109.31679 * 54.63326 * 9 8 7 11 11 C 1.53047 * 109.53735 * 298.63682 * 10 9 8 12 12 H 1.09000 * 109.49548 * 301.40784 * 11 10 9 13 13 N 1.46500 * 109.49619 * 181.34662 * 11 10 9 14 14 C 1.46501 * 120.00240 * 300.00002 * 13 11 10 15 15 C 1.36946 * 119.99894 * 119.99925 * 13 11 10 16 16 H 1.07997 * 119.99669 * 21.99473 * 15 13 11 17 17 C 1.38811 * 120.00088 * 201.99543 * 15 13 11 18 18 N 1.31622 * 120.00021 * 12.71374 * 17 15 13 19 19 Si 1.86791 * 119.99967 * 192.71495 * 17 15 13 20 20 H 1.48498 * 109.47323 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47445 * 119.99977 * 19 17 15 22 22 H 1.48503 * 109.47023 * 240.00190 * 19 17 15 23 23 C 1.46923 * 120.62804 * 179.72400 * 7 5 4 24 24 H 1.08001 * 119.99990 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99876 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46714 * 5.00114 * 3 2 1 28 28 H 1.08995 * 109.47164 * 245.00182 * 3 2 1 29 29 H 1.08995 * 109.47659 * 300.00280 * 4 3 2 30 30 H 1.09000 * 109.46577 * 60.00376 * 4 3 2 31 31 H 1.09001 * 109.58771 * 246.15195 * 8 7 5 32 32 H 1.08998 * 109.58974 * 6.58287 * 8 7 5 33 33 H 1.09007 * 109.49597 * 174.58954 * 9 8 7 34 34 H 1.09000 * 109.49723 * 294.67714 * 9 8 7 35 35 H 1.09004 * 109.46270 * 58.65409 * 10 9 8 36 36 H 1.08995 * 109.46349 * 178.61472 * 10 9 8 37 37 H 1.08997 * 109.47308 * 94.32866 * 14 13 11 38 38 H 1.09008 * 109.46957 * 214.32547 * 14 13 11 39 39 H 1.08995 * 109.46625 * 334.32428 * 14 13 11 40 40 H 0.96999 * 119.99843 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58948 * 353.42300 * 23 7 5 42 42 H 1.09002 * 109.58762 * 113.84623 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7889 2.6380 1.1814 6 8 3.5704 3.4643 0.3210 7 7 4.7060 2.8866 2.1371 8 6 4.9821 1.8951 3.1856 9 6 6.4875 1.6123 3.2126 10 6 7.2473 2.9303 3.3782 11 6 6.9491 3.8458 2.1886 12 1 7.2422 3.3483 1.2641 13 7 7.7019 5.0944 2.3318 14 6 7.4846 5.9509 3.5003 15 6 8.6088 5.4609 1.3734 16 1 8.5315 5.0576 0.3745 17 6 9.6274 6.3507 1.6858 18 7 9.8785 6.6486 2.9430 19 14 10.6417 7.1254 0.3219 20 1 10.1635 6.6292 -0.9935 21 1 10.4982 8.6025 0.3761 22 1 12.0701 6.7600 0.4987 23 6 5.4533 4.1515 2.1465 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 2.4772 1.2356 2.1130 30 1 3.7399 0.5066 1.0921 31 1 4.6668 2.2880 4.1523 32 1 4.4410 0.9740 2.9692 33 1 6.7186 0.9516 4.0483 34 1 6.7849 1.1357 2.2785 35 1 6.9313 3.4183 4.3002 36 1 8.3176 2.7293 3.4224 37 1 8.2201 5.7114 4.2683 38 1 7.5904 6.9961 3.2094 39 1 6.4817 5.7827 3.8926 40 1 10.5905 7.2701 3.1613 41 1 5.2230 4.7187 1.2447 42 1 5.1773 4.7325 3.0265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567187962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:06 Heat of formation + Delta-G solvation = -1.028703 kcal Electronic energy + Delta-G solvation = -20761.680313 eV Core-core repulsion = 17742.650687 eV Total energy + Delta-G solvation = -3019.029626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00423 -37.56931 -35.46999 -35.07693 -32.35880 -31.38899 -30.78432 -28.69224 -26.01855 -25.58487 -24.07220 -23.07298 -21.61194 -19.99748 -19.45732 -18.49033 -16.99647 -16.68525 -15.86441 -15.58794 -15.17459 -14.74360 -14.07452 -13.94917 -13.84979 -13.64151 -13.30800 -12.77658 -12.67277 -12.48093 -12.28723 -12.12306 -11.91637 -11.21091 -11.18132 -11.03261 -10.91052 -10.84446 -10.63578 -10.39835 -10.28954 -10.09246 -9.86062 -9.79089 -9.62041 -9.41677 -8.59965 -8.30680 -6.74971 -5.71087 -3.16674 2.06002 2.83257 3.23371 3.39744 3.47213 3.50068 4.49707 4.51955 4.77167 4.90742 4.99185 5.09907 5.13100 5.18542 5.33339 5.41111 5.46247 5.55969 5.62853 5.65096 5.79339 5.83373 5.88540 6.01078 6.04384 6.17637 6.24357 6.39767 6.42420 6.53060 6.57632 6.67821 6.81223 6.96011 7.01646 7.40210 7.67285 7.73633 7.83521 8.37911 8.43433 9.25000 9.87702 10.35719 11.33813 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029964 B = 0.004179 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.215919 B = 6699.147149 C = 7202.977471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.081 4.081 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.545 6.545 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.169 3.831 12 H 0.063 0.937 13 N -0.593 5.593 14 C 0.162 3.838 15 C -0.253 4.253 16 H 0.069 0.931 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.096 3.904 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.044 0.956 39 H -0.002 1.002 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -13.896 1.091 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.118 4.118 4 C -0.174 4.174 5 C 0.297 3.703 6 O -0.423 6.423 7 N -0.340 5.340 8 C -0.015 4.015 9 C -0.172 4.172 10 C -0.172 4.172 11 C 0.060 3.940 12 H 0.082 0.918 13 N -0.315 5.315 14 C 0.018 3.982 15 C -0.383 4.383 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C -0.028 4.028 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.803 -13.288 0.701 19.173 hybrid contribution 0.758 0.380 -0.434 0.952 sum -13.046 -12.909 0.267 18.355 Atomic orbital electron populations 1.23866 0.95996 1.01790 1.01703 1.23008 0.96076 0.98450 0.99427 1.20523 0.97857 0.95186 0.98273 1.21633 0.98833 0.96133 1.00768 1.20644 0.79865 0.88847 0.80964 1.90693 1.66016 1.48422 1.37154 1.48223 1.38954 1.19090 1.27773 1.21752 0.96976 0.91720 0.91090 1.21939 0.94289 0.98925 1.02012 1.22118 1.00352 0.94431 1.00291 1.20485 0.89234 0.87797 0.96510 0.91833 1.43903 1.44668 1.18683 1.24258 1.20788 0.93531 0.94688 0.89197 1.19291 1.04546 1.24039 0.90381 0.91334 1.24988 0.97247 1.01375 0.96044 1.70086 1.32337 1.37436 1.15475 0.86176 0.79779 0.79065 0.81504 1.20291 1.21606 1.21785 1.22300 0.93251 0.84195 1.03011 0.88624 0.88547 0.87371 0.90762 0.90130 0.89105 0.88937 0.91515 0.90271 0.91308 0.91799 0.92479 0.91494 0.95230 0.93771 0.98382 0.93850 0.89269 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.15 -1.30 9.52 -36.03 -0.34 -1.64 16 3 C -0.08 -0.86 4.95 -27.88 -0.14 -1.00 16 4 C -0.13 -1.39 4.03 -27.88 -0.11 -1.50 16 5 C 0.51 7.77 7.70 -10.99 -0.08 7.68 16 6 O -0.55 -10.60 15.40 5.56 0.09 -10.51 16 7 N -0.61 -9.20 2.98 -173.06 -0.52 -9.71 16 8 C 0.11 1.24 6.34 -3.71 -0.02 1.21 16 9 C -0.13 -1.69 6.08 -26.62 -0.16 -1.85 16 10 C -0.13 -2.30 5.15 -26.69 -0.14 -2.43 16 11 C 0.17 3.47 2.72 -68.05 -0.19 3.28 16 12 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 13 N -0.59 -14.87 2.82 -173.62 -0.49 -15.36 16 14 C 0.16 3.98 8.03 59.85 0.48 4.46 16 15 C -0.25 -7.05 9.60 -15.06 -0.14 -7.19 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 18 N -0.91 -26.50 10.64 55.49 0.59 -25.91 16 19 Si 0.90 22.20 29.57 -169.99 -5.03 17.17 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.10 1.80 5.77 -3.95 -0.02 1.77 16 24 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 25 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 26 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 30 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 38 H 0.04 1.18 7.21 -51.92 -0.37 0.80 16 39 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 42 H 0.06 1.16 6.48 -51.93 -0.34 0.82 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -31.62 332.13 -7.93 -39.55 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.03 Total: -1.84 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.55 Total: 1.60 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.41 Total: -50.98 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.62 -7.93 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567187962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.524 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds