Wall clock time and date at job start Mon Mar 30 2020 00:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99919 * 2 1 4 4 C 1.52998 * 109.46959 * 124.99598 * 3 2 1 5 5 C 1.50702 * 109.47140 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99748 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00043 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.62990 * 0.02562 * 7 5 4 9 9 C 1.53194 * 108.77334 * 126.37126 * 8 7 5 10 10 C 1.53030 * 109.31679 * 54.63326 * 9 8 7 11 11 C 1.53047 * 109.53735 * 298.63682 * 10 9 8 12 12 H 1.09000 * 109.49548 * 301.40784 * 11 10 9 13 13 N 1.46500 * 109.49619 * 181.34662 * 11 10 9 14 14 C 1.46501 * 120.00240 * 300.00002 * 13 11 10 15 15 C 1.36946 * 119.99894 * 119.99925 * 13 11 10 16 16 H 1.07997 * 119.99669 * 21.99473 * 15 13 11 17 17 C 1.38811 * 120.00088 * 201.99543 * 15 13 11 18 18 N 1.31622 * 120.00021 * 12.71374 * 17 15 13 19 19 Si 1.86791 * 119.99967 * 192.71495 * 17 15 13 20 20 H 1.48498 * 109.47323 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47445 * 119.99977 * 19 17 15 22 22 H 1.48503 * 109.47023 * 240.00190 * 19 17 15 23 23 C 1.46923 * 120.62804 * 179.72400 * 7 5 4 24 24 H 1.08001 * 119.99990 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00142 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.99876 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46714 * 5.00114 * 3 2 1 28 28 H 1.08995 * 109.47164 * 245.00182 * 3 2 1 29 29 H 1.08995 * 109.47659 * 300.00280 * 4 3 2 30 30 H 1.09000 * 109.46577 * 60.00376 * 4 3 2 31 31 H 1.09001 * 109.58771 * 246.15195 * 8 7 5 32 32 H 1.08998 * 109.58974 * 6.58287 * 8 7 5 33 33 H 1.09007 * 109.49597 * 174.58954 * 9 8 7 34 34 H 1.09000 * 109.49723 * 294.67714 * 9 8 7 35 35 H 1.09004 * 109.46270 * 58.65409 * 10 9 8 36 36 H 1.08995 * 109.46349 * 178.61472 * 10 9 8 37 37 H 1.08997 * 109.47308 * 94.32866 * 14 13 11 38 38 H 1.09008 * 109.46957 * 214.32547 * 14 13 11 39 39 H 1.08995 * 109.46625 * 334.32428 * 14 13 11 40 40 H 0.96999 * 119.99843 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58948 * 353.42300 * 23 7 5 42 42 H 1.09002 * 109.58762 * 113.84623 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7889 2.6380 1.1814 6 8 3.5704 3.4643 0.3210 7 7 4.7060 2.8866 2.1371 8 6 4.9821 1.8951 3.1856 9 6 6.4875 1.6123 3.2126 10 6 7.2473 2.9303 3.3782 11 6 6.9491 3.8458 2.1886 12 1 7.2422 3.3483 1.2641 13 7 7.7019 5.0944 2.3318 14 6 7.4846 5.9509 3.5003 15 6 8.6088 5.4609 1.3734 16 1 8.5315 5.0576 0.3745 17 6 9.6274 6.3507 1.6858 18 7 9.8785 6.6486 2.9430 19 14 10.6417 7.1254 0.3219 20 1 10.1635 6.6292 -0.9935 21 1 10.4982 8.6025 0.3761 22 1 12.0701 6.7600 0.4987 23 6 5.4533 4.1515 2.1465 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 2.4772 1.2356 2.1130 30 1 3.7399 0.5066 1.0921 31 1 4.6668 2.2880 4.1523 32 1 4.4410 0.9740 2.9692 33 1 6.7186 0.9516 4.0483 34 1 6.7849 1.1357 2.2785 35 1 6.9313 3.4183 4.3002 36 1 8.3176 2.7293 3.4224 37 1 8.2201 5.7114 4.2683 38 1 7.5904 6.9961 3.2094 39 1 6.4817 5.7827 3.8926 40 1 10.5905 7.2701 3.1613 41 1 5.2230 4.7187 1.2447 42 1 5.1773 4.7325 3.0265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567187962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:05 Heat of formation + Delta-G solvation = -20.053440 kcal Electronic energy + Delta-G solvation = -20762.505287 eV Core-core repulsion = 17742.650687 eV Total energy + Delta-G solvation = -3019.854600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25251 -39.01221 -36.78268 -36.25959 -33.98859 -32.86056 -31.82944 -30.23854 -28.08525 -26.75818 -25.49989 -24.39843 -23.02673 -20.99886 -20.62041 -19.76769 -18.78737 -18.08862 -17.10849 -16.79259 -16.66860 -15.93875 -15.71508 -15.30779 -15.13301 -14.82706 -14.64443 -14.43277 -13.86874 -13.78156 -13.63777 -13.38768 -13.05128 -12.89520 -12.78206 -12.51537 -12.29753 -12.10794 -11.99737 -11.91754 -11.84401 -11.78861 -11.66507 -11.38878 -10.81784 -10.67100 -10.17922 -9.68268 -8.78302 -7.86101 -5.33863 1.42101 1.43274 1.44153 1.54545 1.66342 2.05667 2.48921 3.26764 3.55531 3.61539 3.97129 4.00583 4.07809 4.13946 4.21547 4.23698 4.37253 4.41217 4.50143 4.59323 4.69620 4.75872 4.79181 4.88713 4.92898 4.96536 5.04669 5.11797 5.15543 5.25633 5.27163 5.44343 5.49508 5.53964 5.62425 5.70145 5.79466 5.95756 6.29773 6.51149 7.11914 7.22200 7.83744 8.25903 9.16660 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029964 B = 0.004179 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.215919 B = 6699.147149 C = 7202.977471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.121 4.121 5 C 0.501 3.499 6 O -0.598 6.598 7 N -0.608 5.608 8 C 0.105 3.895 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.167 3.833 12 H 0.042 0.958 13 N -0.611 5.611 14 C 0.181 3.819 15 C -0.266 4.266 16 H 0.061 0.939 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.112 3.888 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.008 0.992 38 H 0.013 0.987 39 H 0.030 0.970 40 H 0.249 0.751 41 H 0.052 0.948 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 -16.747 1.824 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C -0.118 4.118 4 C -0.160 4.160 5 C 0.291 3.709 6 O -0.479 6.479 7 N -0.340 5.340 8 C -0.017 4.017 9 C -0.162 4.162 10 C -0.163 4.163 11 C 0.060 3.940 12 H 0.061 0.939 13 N -0.334 5.334 14 C 0.036 3.964 15 C -0.396 4.396 16 H 0.079 0.921 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.214 1.214 23 C -0.014 4.014 24 H 0.132 0.868 25 H 0.108 0.892 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.208 -16.198 1.451 22.266 hybrid contribution 1.123 1.250 -0.688 1.816 sum -14.085 -14.948 0.763 20.553 Atomic orbital electron populations 1.24042 0.96032 1.02444 1.00634 1.22972 0.96151 0.97879 1.00302 1.20463 0.97626 0.96026 0.97691 1.21681 0.98887 0.93515 1.01951 1.21647 0.79470 0.90025 0.79732 1.90674 1.67556 1.50512 1.39173 1.48326 1.38380 1.18423 1.28893 1.22103 0.96401 0.92525 0.90628 1.21904 0.94485 0.96322 1.03498 1.21938 0.99606 0.96424 0.98305 1.20618 0.89693 0.86595 0.97128 0.93929 1.44110 1.44799 1.20644 1.23852 1.20491 0.94553 0.92883 0.88482 1.19521 1.05045 1.24201 0.90878 0.92081 1.25704 0.98536 1.02038 0.98144 1.70226 1.32889 1.37974 1.16999 0.85206 0.78218 0.77878 0.79160 1.19690 1.21598 1.21420 1.21768 0.92335 0.86059 1.01197 0.86798 0.89164 0.85339 0.92615 0.92115 0.86081 0.85978 0.89893 0.85787 0.87789 0.91863 0.92417 0.94076 0.97353 0.96804 0.95211 0.94156 0.92901 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 67.78 0.97 -1.62 16 2 C -0.16 -2.18 9.52 25.65 0.24 -1.94 16 3 C -0.08 -1.57 4.95 29.85 0.15 -1.42 16 4 C -0.12 -2.09 4.03 29.85 0.12 -1.97 16 5 C 0.50 14.61 7.70 87.66 0.67 15.29 16 6 O -0.60 -23.79 15.40 -3.03 -0.05 -23.84 16 7 N -0.61 -17.29 2.98 -819.83 -2.44 -19.74 16 8 C 0.10 1.93 6.34 86.36 0.55 2.48 16 9 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 10 C -0.12 -4.16 5.15 30.62 0.16 -4.01 16 11 C 0.17 6.99 2.72 44.92 0.12 7.11 16 12 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 13 N -0.61 -31.62 2.82 -703.20 -1.98 -33.60 16 14 C 0.18 9.10 8.03 127.77 1.03 10.13 16 15 C -0.27 -15.32 9.60 84.03 0.81 -14.52 16 16 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 17 C -0.05 -2.82 5.10 84.86 0.43 -2.39 16 18 N -0.93 -56.02 10.64 21.65 0.23 -55.79 16 19 Si 0.97 46.66 29.57 68.60 2.03 48.69 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 C 0.11 4.21 5.77 86.21 0.50 4.70 16 24 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 25 H 0.09 1.29 7.84 -2.91 -0.02 1.27 16 26 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.06 1.27 7.75 -2.39 -0.02 1.26 16 28 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 29 H 0.12 1.44 7.94 -2.39 -0.02 1.42 16 30 H 0.12 1.46 7.69 -2.39 -0.02 1.45 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.28 5.93 -2.39 -0.01 1.27 16 33 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.93 7.72 -2.39 -0.02 1.92 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.01 0.45 7.41 -2.39 -0.02 0.43 16 38 H 0.01 0.74 7.21 -2.38 -0.02 0.72 16 39 H 0.03 1.27 6.35 -2.39 -0.02 1.26 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.05 2.37 7.01 -2.39 -0.02 2.35 16 42 H 0.06 2.34 6.48 -2.39 -0.02 2.32 16 Total: -1.00 -73.32 332.13 4.70 -68.62 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.97 Total: 6.33 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.94 Total: 9.32 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.19 Total: -109.13 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.32 4.70 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567187962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.569 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds