Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.53453 * 2 1 4 4 N 1.46899 * 109.47550 * 324.53252 * 3 2 1 5 5 C 1.46897 * 111.00155 * 167.89400 * 4 3 2 6 6 C 1.50700 * 109.47050 * 190.22728 * 5 4 3 7 7 H 1.07998 * 119.99831 * 5.35267 * 6 5 4 8 8 C 1.37878 * 119.99896 * 185.34896 * 6 5 4 9 9 N 1.31513 * 119.99831 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99962 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47252 * 90.00081 * 10 8 6 12 12 H 1.48499 * 109.47338 * 210.00350 * 10 8 6 13 13 H 1.48504 * 109.46878 * 330.00348 * 10 8 6 14 14 C 1.46900 * 110.99824 * 291.85023 * 4 3 2 15 15 C 1.53005 * 109.47198 * 306.29511 * 14 4 3 16 16 C 1.53001 * 117.49803 * 242.87624 * 15 14 4 17 17 C 1.52996 * 59.99957 * 252.50715 * 16 15 14 18 18 C 1.53120 * 109.50352 * 239.90608 * 2 1 3 19 19 C 1.53123 * 109.16037 * 297.71122 * 18 2 1 20 20 C 1.53034 * 109.28036 * 302.34551 * 19 18 2 21 21 N 1.46826 * 109.51381 * 59.17729 * 20 19 18 22 22 C 1.46845 * 111.21130 * 298.24983 * 21 20 19 23 23 H 1.08997 * 109.47243 * 297.20554 * 1 2 3 24 24 H 1.09005 * 109.47591 * 57.20350 * 1 2 3 25 25 H 1.09008 * 109.47221 * 177.20120 * 1 2 3 26 26 H 1.09001 * 109.46528 * 84.53471 * 3 2 1 27 27 H 1.09003 * 109.47258 * 204.52951 * 3 2 1 28 28 H 1.08998 * 109.46953 * 310.23321 * 5 4 3 29 29 H 1.08998 * 109.47147 * 70.23154 * 5 4 3 30 30 H 0.97001 * 119.99437 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47273 * 66.29013 * 14 4 3 32 32 H 1.08997 * 109.47365 * 186.29357 * 14 4 3 33 33 H 1.09000 * 115.54969 * 28.57066 * 15 14 4 34 34 H 1.09008 * 117.49723 * 359.97438 * 16 15 14 35 35 H 1.08993 * 117.49987 * 145.01612 * 16 15 14 36 36 H 1.09004 * 117.50192 * 252.51393 * 17 16 15 37 37 H 1.09002 * 117.50210 * 107.48793 * 17 16 15 38 38 H 1.09003 * 109.52226 * 57.61465 * 18 2 1 39 39 H 1.09004 * 109.52611 * 177.74454 * 18 2 1 40 40 H 1.09003 * 109.50371 * 62.29012 * 19 18 2 41 41 H 1.09000 * 109.50219 * 182.40032 * 19 18 2 42 42 H 1.08995 * 109.46062 * 179.19396 * 20 19 18 43 43 H 1.09003 * 109.46282 * 299.17477 * 20 19 18 44 44 H 1.00907 * 110.98263 * 174.15785 * 21 20 19 45 45 H 1.08998 * 109.46498 * 301.73889 * 22 21 20 46 46 H 1.09001 * 109.46134 * 181.76297 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4419 0.0000 4 7 1.1423 2.2807 -0.8036 5 6 1.4286 3.7067 -0.5980 6 6 0.3399 4.5341 -1.2314 7 1 -0.5254 4.0506 -1.6603 8 6 0.4485 5.9082 -1.2635 9 7 1.5024 6.4968 -0.7416 10 14 -0.9013 6.9338 -2.0481 11 1 -1.9151 7.2862 -1.0218 12 1 -0.3148 8.1762 -2.6116 13 1 -1.5471 6.1541 -3.1345 14 6 1.2246 1.9271 -2.2270 15 6 2.6844 1.9801 -2.6821 16 6 3.0517 3.0021 -3.7599 17 6 2.9984 1.5125 -4.1047 18 6 2.0412 -0.7237 -1.2488 19 6 1.5749 -2.1817 -1.2109 20 6 2.0846 -2.8420 0.0722 21 7 1.5675 -2.1135 1.2374 22 6 2.0409 -0.7235 1.2479 23 1 -0.3633 0.4698 0.9139 24 1 -0.3634 0.5566 -0.8639 25 1 -0.3634 -1.0265 -0.0502 26 1 2.0707 1.8170 1.0230 27 1 3.0442 1.4718 -0.4267 28 1 1.4708 3.9184 0.4704 29 1 2.3862 3.9547 -1.0556 30 1 1.5790 7.4635 -0.7645 31 1 0.8345 0.9199 -2.3744 32 1 0.6359 2.6339 -2.8117 33 1 3.4254 1.7746 -1.9096 34 1 2.2533 3.6365 -4.1449 35 1 4.0345 3.4692 -3.6965 36 1 3.9461 0.9994 -4.2681 37 1 2.1650 1.1669 -4.7163 38 1 1.6441 -0.2374 -2.1398 39 1 3.1304 -0.6891 -1.2697 40 1 0.4856 -2.2161 -1.2300 41 1 1.9715 -2.7132 -2.0760 42 1 1.7423 -3.8762 0.1091 43 1 3.1743 -2.8195 0.0841 44 1 1.8112 -2.5850 2.0956 45 1 3.1308 -0.7110 1.2543 46 1 1.6668 -0.2192 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576500321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = 34.639050 kcal Electronic energy + Delta-G solvation = -22122.116788 eV Core-core repulsion = 19240.466927 eV Total energy + Delta-G solvation = -2881.649861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76697 -37.53481 -35.15963 -33.09692 -31.84127 -31.34831 -27.28341 -26.81812 -26.40971 -23.83649 -23.50950 -21.86834 -21.49472 -21.15440 -19.12157 -18.02747 -16.42362 -16.04649 -15.55710 -15.06286 -14.67834 -14.41011 -14.29520 -14.13791 -13.48171 -13.38238 -12.79112 -12.67907 -12.33052 -12.12707 -11.82799 -11.35060 -11.18406 -11.16656 -11.06176 -11.00162 -10.91188 -10.75087 -10.63757 -10.45204 -10.23991 -10.06175 -9.86017 -9.70595 -9.57843 -9.15426 -8.97486 -8.37507 -8.35318 -7.07061 -5.96974 -3.97148 3.34458 3.40705 3.43859 4.24044 4.33000 4.47320 4.91145 5.00720 5.04496 5.15519 5.25198 5.37911 5.40840 5.47940 5.48939 5.56650 5.59748 5.68523 5.83217 5.86358 5.94493 5.98477 6.03367 6.06737 6.17440 6.23793 6.29550 6.37026 6.40754 6.47678 6.56182 6.62646 6.65748 6.78460 6.85057 7.01280 7.07275 7.14447 7.37165 7.43072 7.52384 7.87904 8.18196 8.29208 8.64700 9.11157 9.66492 11.13712 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.005680 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.758335 B = 4928.635374 C = 5539.853161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C 0.057 3.943 4 N -0.521 5.521 5 C 0.191 3.809 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.083 3.917 15 C -0.174 4.174 16 C -0.167 4.167 17 C -0.190 4.190 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.060 3.940 21 N -0.685 5.685 22 C 0.070 3.930 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.021 0.979 29 H 0.001 0.999 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.023 0.977 44 H 0.336 0.664 45 H 0.023 0.977 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 -16.007 -0.825 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.072 4.072 4 N -0.243 5.243 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.045 4.045 15 C -0.194 4.194 16 C -0.204 4.204 17 C -0.227 4.227 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.070 4.070 21 N -0.316 5.316 22 C -0.060 4.060 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.153 0.847 45 H 0.041 0.959 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.043 -15.740 -0.921 15.899 hybrid contribution 1.384 0.820 -0.294 1.635 sum 3.427 -14.921 -1.215 15.357 Atomic orbital electron populations 1.21587 0.92981 1.00014 1.02584 1.20530 0.97657 0.93704 0.93196 1.22160 0.94383 0.92357 0.98317 1.62399 1.50248 1.06670 1.05034 1.19719 0.96013 0.81176 0.96502 1.21127 1.05199 0.90625 1.36896 0.92069 1.24948 0.95705 0.97951 0.95875 1.69962 1.28313 1.09638 1.45970 0.86584 0.82071 0.79699 0.79554 1.20739 1.21469 1.19939 1.22029 0.91470 1.00482 0.90502 1.23123 1.01076 1.03843 0.91362 1.22882 1.02554 0.91327 1.03601 1.22865 1.02015 0.98279 0.99575 1.22098 0.99656 0.94831 0.99487 1.21644 1.01927 0.96265 0.95840 1.21890 0.96364 0.97072 0.91628 1.60218 1.63672 1.02874 1.04803 1.21993 0.96329 0.88654 0.99027 0.93529 0.91459 0.93421 0.91866 0.95295 0.96117 0.98120 0.93124 0.91150 0.90072 0.88312 0.88525 0.89919 0.90025 0.89373 0.89570 0.93257 0.90868 0.92382 0.91498 0.95875 0.84651 0.95904 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 7.51 37.15 0.28 -1.52 16 2 C -0.05 -0.73 0.51 -154.43 -0.08 -0.81 16 3 C 0.06 1.00 4.29 -3.82 -0.02 0.99 16 4 N -0.52 -10.69 3.37 -236.07 -0.79 -11.48 16 5 C 0.19 4.85 4.61 -4.98 -0.02 4.83 16 6 C -0.50 -13.76 8.25 -34.44 -0.28 -14.04 16 7 H 0.06 1.68 7.41 -52.49 -0.39 1.29 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.08 1.55 4.36 -3.82 -0.02 1.53 16 15 C -0.17 -3.00 3.32 -90.62 -0.30 -3.30 16 16 C -0.17 -2.91 10.18 -26.73 -0.27 -3.18 16 17 C -0.19 -2.77 10.25 -26.73 -0.27 -3.05 16 18 C -0.12 -1.65 3.79 -26.61 -0.10 -1.76 16 19 C -0.12 -1.38 5.74 -26.65 -0.15 -1.53 16 20 C 0.06 0.64 6.55 -3.85 -0.03 0.62 16 21 N -0.69 -7.87 6.18 -113.84 -0.70 -8.58 16 22 C 0.07 0.91 5.14 -3.84 -0.02 0.89 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.16 5.65 -51.93 -0.29 0.87 16 25 H 0.05 0.70 5.95 -51.92 -0.31 0.39 16 26 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 27 H 0.03 0.52 5.16 -51.93 -0.27 0.25 16 28 H 0.02 0.57 7.90 -51.93 -0.41 0.16 16 29 H 0.00 0.02 7.27 -51.93 -0.38 -0.35 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.07 1.18 4.04 -51.93 -0.21 0.97 16 32 H 0.08 1.71 6.50 -51.93 -0.34 1.38 16 33 H 0.10 1.76 5.57 -51.93 -0.29 1.47 16 34 H 0.10 1.82 8.03 -51.92 -0.42 1.40 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.23 4.06 -51.93 -0.21 1.02 16 39 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.34 3.21 8.90 -39.29 -0.35 2.86 16 45 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -28.45 333.92 -10.09 -38.53 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.96 Total: 4.58 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.38 Total: -18.86 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.76 Total: -45.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.45 -10.09 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576500321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.174 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds