Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.53453 * 2 1 4 4 N 1.46899 * 109.47550 * 324.53252 * 3 2 1 5 5 C 1.46897 * 111.00155 * 167.89400 * 4 3 2 6 6 C 1.50700 * 109.47050 * 190.22728 * 5 4 3 7 7 H 1.07998 * 119.99831 * 5.35267 * 6 5 4 8 8 C 1.37878 * 119.99896 * 185.34896 * 6 5 4 9 9 N 1.31513 * 119.99831 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99962 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47252 * 90.00081 * 10 8 6 12 12 H 1.48499 * 109.47338 * 210.00350 * 10 8 6 13 13 H 1.48504 * 109.46878 * 330.00348 * 10 8 6 14 14 C 1.46900 * 110.99824 * 291.85023 * 4 3 2 15 15 C 1.53005 * 109.47198 * 306.29511 * 14 4 3 16 16 C 1.53001 * 117.49803 * 242.87624 * 15 14 4 17 17 C 1.52996 * 59.99957 * 252.50715 * 16 15 14 18 18 C 1.53120 * 109.50352 * 239.90608 * 2 1 3 19 19 C 1.53123 * 109.16037 * 297.71122 * 18 2 1 20 20 C 1.53034 * 109.28036 * 302.34551 * 19 18 2 21 21 N 1.46826 * 109.51381 * 59.17729 * 20 19 18 22 22 C 1.46845 * 111.21130 * 298.24983 * 21 20 19 23 23 H 1.08997 * 109.47243 * 297.20554 * 1 2 3 24 24 H 1.09005 * 109.47591 * 57.20350 * 1 2 3 25 25 H 1.09008 * 109.47221 * 177.20120 * 1 2 3 26 26 H 1.09001 * 109.46528 * 84.53471 * 3 2 1 27 27 H 1.09003 * 109.47258 * 204.52951 * 3 2 1 28 28 H 1.08998 * 109.46953 * 310.23321 * 5 4 3 29 29 H 1.08998 * 109.47147 * 70.23154 * 5 4 3 30 30 H 0.97001 * 119.99437 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47273 * 66.29013 * 14 4 3 32 32 H 1.08997 * 109.47365 * 186.29357 * 14 4 3 33 33 H 1.09000 * 115.54969 * 28.57066 * 15 14 4 34 34 H 1.09008 * 117.49723 * 359.97438 * 16 15 14 35 35 H 1.08993 * 117.49987 * 145.01612 * 16 15 14 36 36 H 1.09004 * 117.50192 * 252.51393 * 17 16 15 37 37 H 1.09002 * 117.50210 * 107.48793 * 17 16 15 38 38 H 1.09003 * 109.52226 * 57.61465 * 18 2 1 39 39 H 1.09004 * 109.52611 * 177.74454 * 18 2 1 40 40 H 1.09003 * 109.50371 * 62.29012 * 19 18 2 41 41 H 1.09000 * 109.50219 * 182.40032 * 19 18 2 42 42 H 1.08995 * 109.46062 * 179.19396 * 20 19 18 43 43 H 1.09003 * 109.46282 * 299.17477 * 20 19 18 44 44 H 1.00907 * 110.98263 * 174.15785 * 21 20 19 45 45 H 1.08998 * 109.46498 * 301.73889 * 22 21 20 46 46 H 1.09001 * 109.46134 * 181.76297 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4419 0.0000 4 7 1.1423 2.2807 -0.8036 5 6 1.4286 3.7067 -0.5980 6 6 0.3399 4.5341 -1.2314 7 1 -0.5254 4.0506 -1.6603 8 6 0.4485 5.9082 -1.2635 9 7 1.5024 6.4968 -0.7416 10 14 -0.9013 6.9338 -2.0481 11 1 -1.9151 7.2862 -1.0218 12 1 -0.3148 8.1762 -2.6116 13 1 -1.5471 6.1541 -3.1345 14 6 1.2246 1.9271 -2.2270 15 6 2.6844 1.9801 -2.6821 16 6 3.0517 3.0021 -3.7599 17 6 2.9984 1.5125 -4.1047 18 6 2.0412 -0.7237 -1.2488 19 6 1.5749 -2.1817 -1.2109 20 6 2.0846 -2.8420 0.0722 21 7 1.5675 -2.1135 1.2374 22 6 2.0409 -0.7235 1.2479 23 1 -0.3633 0.4698 0.9139 24 1 -0.3634 0.5566 -0.8639 25 1 -0.3634 -1.0265 -0.0502 26 1 2.0707 1.8170 1.0230 27 1 3.0442 1.4718 -0.4267 28 1 1.4708 3.9184 0.4704 29 1 2.3862 3.9547 -1.0556 30 1 1.5790 7.4635 -0.7645 31 1 0.8345 0.9199 -2.3744 32 1 0.6359 2.6339 -2.8117 33 1 3.4254 1.7746 -1.9096 34 1 2.2533 3.6365 -4.1449 35 1 4.0345 3.4692 -3.6965 36 1 3.9461 0.9994 -4.2681 37 1 2.1650 1.1669 -4.7163 38 1 1.6441 -0.2374 -2.1398 39 1 3.1304 -0.6891 -1.2697 40 1 0.4856 -2.2161 -1.2300 41 1 1.9715 -2.7132 -2.0760 42 1 1.7423 -3.8762 0.1091 43 1 3.1743 -2.8195 0.0841 44 1 1.8112 -2.5850 2.0956 45 1 3.1308 -0.7110 1.2543 46 1 1.6668 -0.2192 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576500321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = 17.356304 kcal Electronic energy + Delta-G solvation = -22122.866224 eV Core-core repulsion = 19240.466927 eV Total energy + Delta-G solvation = -2882.399297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03923 -38.83236 -36.61275 -34.90585 -33.37719 -32.39736 -29.22297 -28.29365 -27.63509 -25.53851 -24.54647 -23.20980 -23.13527 -22.34597 -20.59918 -19.17240 -18.35306 -17.31232 -17.08027 -16.66206 -16.19162 -15.77447 -15.57951 -15.31428 -14.77818 -14.57232 -14.23308 -14.18932 -13.92092 -13.46532 -13.30562 -12.90444 -12.75681 -12.60687 -12.54570 -12.45213 -12.29664 -12.27645 -12.14869 -11.96361 -11.81007 -11.47083 -11.35186 -11.03938 -10.90850 -10.85317 -10.55979 -10.40621 -9.26706 -8.79299 -8.15144 -6.23455 1.40595 1.41588 1.52136 2.42014 2.97919 3.17739 3.24924 3.55758 3.82780 3.87727 3.99499 4.08599 4.12171 4.19539 4.32780 4.46604 4.50867 4.54535 4.65906 4.71125 4.78748 4.79698 4.81196 4.86302 4.96164 5.02033 5.03362 5.07398 5.10294 5.18717 5.28491 5.29868 5.34513 5.36575 5.42569 5.50964 5.56710 5.68822 5.72210 5.82193 6.13862 6.15840 6.45341 6.60576 6.76692 6.94183 7.45501 8.95342 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.005680 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.758335 B = 4928.635374 C = 5539.853161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.044 4.044 3 C 0.059 3.941 4 N -0.525 5.525 5 C 0.210 3.790 6 C -0.510 4.510 7 H 0.058 0.942 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.091 3.909 15 C -0.185 4.185 16 C -0.191 4.191 17 C -0.148 4.148 18 C -0.118 4.118 19 C -0.116 4.116 20 C 0.059 3.941 21 N -0.689 5.689 22 C 0.075 3.925 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.030 0.970 28 H -0.011 1.011 29 H -0.026 1.026 30 H 0.261 0.739 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.350 0.650 45 H 0.026 0.974 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -18.356 -1.876 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.045 4.045 3 C -0.070 4.070 4 N -0.247 5.247 5 C 0.084 3.916 6 C -0.549 4.549 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.189 1.189 14 C -0.037 4.037 15 C -0.205 4.205 16 C -0.228 4.228 17 C -0.185 4.185 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.070 4.070 21 N -0.321 5.321 22 C -0.055 4.055 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.007 0.993 29 H -0.009 1.009 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.045 0.955 44 H 0.169 0.831 45 H 0.044 0.956 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.817 -18.122 -1.969 18.320 hybrid contribution 1.474 1.516 0.061 2.115 sum 3.291 -16.606 -1.908 17.036 Atomic orbital electron populations 1.21481 0.93660 1.00279 1.00810 1.20442 0.96890 0.91833 0.95295 1.22212 0.94113 0.93844 0.96826 1.62308 1.51204 1.04253 1.06913 1.19309 0.94237 0.84259 0.93824 1.21390 1.05462 0.91270 1.36747 0.92344 1.25794 0.97976 0.99220 0.96316 1.70091 1.30262 1.09975 1.47217 0.85518 0.79127 0.77954 0.78840 1.20115 1.21016 1.18934 1.21960 0.92314 1.00757 0.88671 1.22975 0.99762 1.05095 0.92660 1.22854 1.01830 0.93108 1.05001 1.22951 1.03600 0.95318 0.96625 1.22004 0.99605 0.96047 0.97874 1.21636 1.01577 0.94885 0.97268 1.21949 0.96625 0.97772 0.90613 1.60175 1.63808 1.02093 1.06037 1.21830 0.96400 0.89658 0.97615 0.95256 0.93223 0.91995 0.93398 0.95229 0.99316 1.00858 0.93012 0.88721 0.92964 0.88850 0.90641 0.90050 0.87472 0.87789 0.90484 0.93113 0.91471 0.90457 0.89518 0.95461 0.83119 0.95567 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.24 7.51 71.98 0.54 -2.70 16 2 C -0.04 -1.24 0.51 -52.13 -0.03 -1.27 16 3 C 0.06 2.12 4.29 86.30 0.37 2.49 16 4 N -0.52 -22.26 3.37 -900.79 -3.03 -25.29 16 5 C 0.21 11.24 4.61 85.56 0.39 11.63 16 6 C -0.51 -29.04 8.25 25.60 0.21 -28.83 16 7 H 0.06 3.29 7.41 -2.91 -0.02 3.27 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.09 3.40 4.36 86.30 0.38 3.78 16 15 C -0.19 -6.33 3.32 -10.79 -0.04 -6.37 16 16 C -0.19 -6.71 10.18 30.59 0.31 -6.40 16 17 C -0.15 -3.96 10.25 30.59 0.31 -3.65 16 18 C -0.12 -2.90 3.79 30.68 0.12 -2.78 16 19 C -0.12 -2.30 5.74 30.65 0.18 -2.12 16 20 C 0.06 1.06 6.55 86.33 0.57 1.63 16 21 N -0.69 -14.06 6.18 -514.08 -3.18 -17.24 16 22 C 0.07 1.85 5.14 86.32 0.44 2.29 16 23 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.69 5.65 -2.38 -0.01 1.68 16 25 H 0.06 1.73 5.95 -2.38 -0.01 1.71 16 26 H 0.05 1.84 7.65 -2.39 -0.02 1.82 16 27 H 0.03 1.07 5.16 -2.39 -0.01 1.06 16 28 H -0.01 -0.66 7.90 -2.39 -0.02 -0.68 16 29 H -0.03 -1.53 7.27 -2.39 -0.02 -1.55 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.10 3.10 4.04 -2.38 -0.01 3.09 16 32 H 0.05 2.26 6.50 -2.39 -0.02 2.25 16 33 H 0.09 3.32 5.57 -2.39 -0.01 3.30 16 34 H 0.07 2.95 8.03 -2.38 -0.02 2.93 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.02 4.06 -2.39 -0.01 2.01 16 39 H 0.05 1.25 8.08 -2.38 -0.02 1.23 16 40 H 0.07 1.44 6.52 -2.39 -0.02 1.42 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.35 5.72 8.90 -89.69 -0.80 4.92 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 1.72 8.13 -2.39 -0.02 1.71 16 Total: -1.00 -63.02 333.92 0.48 -62.53 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.16 Total: 21.16 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 4.22 Total: -31.57 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -5.92 Total: -99.16 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.02 0.48 -62.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576500321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.890 kcal (2) G-P(sol) polarization free energy of solvation -63.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds