Wall clock time and date at job start Mon Mar 30 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.49888 * 2 1 4 4 N 1.46900 * 109.47029 * 300.42695 * 3 2 1 5 5 C 1.46897 * 110.99921 * 85.55898 * 4 3 2 6 6 C 1.50699 * 109.47292 * 200.74331 * 5 4 3 7 7 H 1.08002 * 119.99871 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00167 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99926 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99865 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46878 * 90.00376 * 10 8 6 12 12 H 1.48500 * 109.47243 * 210.00114 * 10 8 6 13 13 H 1.48496 * 109.47339 * 330.00374 * 10 8 6 14 14 C 1.46897 * 110.99880 * 209.51190 * 4 3 2 15 15 C 1.53003 * 109.47244 * 72.92880 * 14 4 3 16 16 C 1.52995 * 117.49780 * 243.26440 * 15 14 4 17 17 C 1.52998 * 60.00341 * 252.51070 * 16 15 14 18 18 C 1.53122 * 109.49858 * 120.07222 * 2 1 3 19 19 C 1.53114 * 109.15945 * 62.33585 * 18 2 1 20 20 C 1.53034 * 109.28216 * 57.64982 * 19 18 2 21 21 N 1.46849 * 109.52295 * 300.82166 * 20 19 18 22 22 C 1.46845 * 111.19859 * 61.74132 * 21 20 19 23 23 H 1.09004 * 109.46712 * 69.72448 * 1 2 3 24 24 H 1.09002 * 109.46868 * 189.71551 * 1 2 3 25 25 H 1.08993 * 109.47235 * 309.72433 * 1 2 3 26 26 H 1.08997 * 109.46689 * 180.43078 * 3 2 1 27 27 H 1.09000 * 109.46883 * 60.43181 * 3 2 1 28 28 H 1.08999 * 109.47515 * 320.74337 * 5 4 3 29 29 H 1.08999 * 109.47105 * 80.74224 * 5 4 3 30 30 H 0.96999 * 120.00108 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.47071 * 192.93186 * 14 4 3 32 32 H 1.09008 * 109.47400 * 312.92856 * 14 4 3 33 33 H 1.08999 * 115.54426 * 28.97217 * 15 14 4 34 34 H 1.09003 * 117.50250 * 0.02562 * 16 15 14 35 35 H 1.09002 * 117.49459 * 145.02056 * 16 15 14 36 36 H 1.08991 * 117.49885 * 252.51739 * 17 16 15 37 37 H 1.09000 * 117.49504 * 107.48628 * 17 16 15 38 38 H 1.09001 * 109.52006 * 182.23267 * 18 2 1 39 39 H 1.08996 * 109.52359 * 302.42416 * 18 2 1 40 40 H 1.09004 * 109.50684 * 177.59588 * 19 18 2 41 41 H 1.09003 * 109.50064 * 297.70730 * 19 18 2 42 42 H 1.08998 * 109.46734 * 60.83609 * 20 19 18 43 43 H 1.09003 * 109.46310 * 180.80772 * 20 19 18 44 44 H 1.00901 * 111.00320 * 297.64708 * 21 20 19 45 45 H 1.09002 * 109.46377 * 178.24157 * 22 21 20 46 46 H 1.09003 * 109.45945 * 58.27232 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 7 1.5430 2.1380 -1.1942 5 6 0.2030 2.6924 -0.9603 6 6 -0.4783 2.9347 -2.2824 7 1 0.0332 2.7006 -3.2044 8 6 -1.7543 3.4562 -2.3152 9 7 -2.3490 3.6671 -3.4690 10 14 -2.6387 3.8617 -0.7206 11 1 -2.3428 5.2645 -0.3334 12 1 -4.1024 3.6990 -0.9111 13 1 -2.1740 2.9440 0.3505 14 6 2.4793 3.1863 -1.6213 15 6 3.7152 2.5406 -2.2511 16 6 5.0595 2.7604 -1.5544 17 6 4.7574 3.4706 -2.8755 18 6 2.0412 -0.7233 1.2491 19 6 1.5759 -2.1815 1.2111 20 6 2.0864 -2.8416 -0.0717 21 7 1.5694 -2.1136 -1.2375 22 6 2.0419 -0.7233 -1.2477 23 1 -0.3633 0.3561 -0.9640 24 1 -0.3633 -1.0130 0.1734 25 1 -0.3633 0.6567 0.7904 26 1 3.1307 1.4417 -0.0077 27 1 1.6840 1.9540 0.8938 28 1 -0.3846 1.9871 -0.3727 29 1 0.2889 3.6340 -0.4179 30 1 -3.2465 4.0343 -3.4921 31 1 1.9933 3.8312 -2.3535 32 1 2.7795 3.7793 -0.7574 33 1 3.5486 1.5766 -2.7316 34 1 5.0634 3.3646 -0.6472 35 1 5.7776 1.9407 -1.5765 36 1 5.2768 3.1182 -3.7665 37 1 4.5626 4.5424 -2.8375 38 1 3.1304 -0.6890 1.2697 39 1 1.6435 -0.2370 2.1399 40 1 1.9724 -2.7128 2.0764 41 1 0.4866 -2.2165 1.2298 42 1 3.1761 -2.8186 -0.0832 43 1 1.7447 -3.8760 -0.1087 44 1 0.5617 -2.1532 -1.2709 45 1 1.6679 -0.2191 -2.1389 46 1 3.1318 -0.7102 -1.2536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576500322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:36 Heat of formation + Delta-G solvation = 25.141077 kcal Electronic energy + Delta-G solvation = -22060.914996 eV Core-core repulsion = 19178.853272 eV Total energy + Delta-G solvation = -2882.061724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67461 -37.61775 -35.63446 -32.77713 -32.05527 -31.09229 -28.54276 -26.49376 -26.39331 -23.81145 -23.37258 -22.15643 -21.47087 -20.49574 -19.63408 -18.47096 -16.72714 -15.81248 -15.57407 -15.13364 -14.64844 -14.57583 -14.16380 -13.95201 -13.78423 -13.37288 -12.90255 -12.48617 -12.32706 -12.25453 -12.15854 -11.89172 -11.60857 -11.29162 -11.14308 -11.07335 -11.02676 -10.90737 -10.67469 -10.56094 -10.32454 -10.09036 -10.06449 -9.75876 -9.64254 -9.48551 -9.10687 -8.53038 -8.06087 -7.31769 -6.03137 -3.98790 3.26558 3.34950 3.35725 4.11153 4.42131 4.54800 4.64783 4.89972 5.05230 5.08450 5.22090 5.23301 5.25160 5.29590 5.45047 5.52994 5.60321 5.72904 5.77982 5.80533 5.83770 5.89849 5.96643 6.05256 6.07438 6.10601 6.16414 6.20253 6.23771 6.31755 6.37658 6.42141 6.48688 6.54278 6.74946 6.80431 6.88152 6.95875 7.00917 7.34167 7.66086 7.68836 7.95913 8.09446 8.70021 9.09242 9.59666 11.10261 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.008041 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.046592 B = 3481.508235 C = 4913.213510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C 0.066 3.934 4 N -0.517 5.517 5 C 0.144 3.856 6 C -0.501 4.501 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.092 3.908 15 C -0.130 4.130 16 C -0.192 4.192 17 C -0.183 4.183 18 C -0.109 4.109 19 C -0.158 4.158 20 C 0.058 3.942 21 N -0.689 5.689 22 C 0.079 3.921 23 H 0.090 0.910 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.049 0.951 29 H -0.022 1.022 30 H 0.262 0.738 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.341 0.659 45 H 0.097 0.903 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -7.840 8.287 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.063 4.063 4 N -0.240 5.240 5 C 0.018 3.982 6 C -0.539 4.539 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.037 4.037 15 C -0.148 4.148 16 C -0.229 4.229 17 C -0.220 4.220 18 C -0.147 4.147 19 C -0.197 4.197 20 C -0.073 4.073 21 N -0.317 5.317 22 C -0.050 4.050 23 H 0.108 0.892 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.066 0.934 29 H -0.004 1.004 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.159 0.841 45 H 0.115 0.885 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.290 -8.347 7.383 15.864 hybrid contribution -1.051 1.418 2.393 2.974 sum 10.239 -6.929 9.776 15.762 Atomic orbital electron populations 1.22185 0.94460 0.99826 1.04065 1.21124 0.96399 0.95320 0.95728 1.22066 0.98572 0.93509 0.92178 1.61814 1.02948 1.27964 1.31308 1.20653 0.86172 0.93184 0.98170 1.21048 0.99326 1.40953 0.92600 0.90081 1.24879 0.97314 0.95552 0.95538 1.69890 1.14310 1.45524 1.24275 0.86964 0.79290 0.79093 0.84966 1.20548 1.21253 1.19299 1.21605 0.91124 0.92817 0.98112 1.22418 0.89384 1.00778 1.02248 1.23015 1.00485 1.03265 0.96183 1.22892 1.04167 0.98665 0.96290 1.21594 1.00139 0.95001 0.97969 1.22288 1.01404 0.96645 0.99354 1.21979 1.00018 0.97095 0.88161 1.60739 1.15751 1.14818 1.40366 1.21983 0.99051 0.86111 0.97868 0.89165 0.94076 0.93356 0.91930 0.95784 0.93365 1.00428 0.92788 0.89308 0.96323 0.87113 0.89572 0.89532 0.89205 0.89144 0.92389 0.92590 0.92270 0.91719 0.91498 0.91524 0.84077 0.88518 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 6.14 37.16 0.23 -2.24 16 2 C -0.08 -1.24 0.59 -154.42 -0.09 -1.33 16 3 C 0.07 1.08 4.00 -3.82 -0.02 1.07 16 4 N -0.52 -9.97 3.41 -236.07 -0.80 -10.77 16 5 C 0.14 3.31 2.74 -4.98 -0.01 3.30 16 6 C -0.50 -13.68 9.13 -34.44 -0.31 -13.99 16 7 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 10 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 14 C 0.09 1.66 5.00 -3.82 -0.02 1.64 16 15 C -0.13 -1.97 5.07 -90.62 -0.46 -2.43 16 16 C -0.19 -2.46 9.92 -26.73 -0.27 -2.73 16 17 C -0.18 -2.43 10.25 -26.73 -0.27 -2.70 16 18 C -0.11 -1.38 4.79 -26.61 -0.13 -1.51 16 19 C -0.16 -1.79 5.74 -26.65 -0.15 -1.94 16 20 C 0.06 0.67 6.55 -3.83 -0.03 0.64 16 21 N -0.69 -9.46 6.81 -113.82 -0.77 -10.24 16 22 C 0.08 1.19 5.16 -3.84 -0.02 1.17 16 23 H 0.09 1.79 6.47 -51.93 -0.34 1.46 16 24 H 0.04 0.60 5.20 -51.93 -0.27 0.33 16 25 H 0.05 0.84 7.18 -51.93 -0.37 0.47 16 26 H 0.06 0.95 6.88 -51.93 -0.36 0.59 16 27 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 28 H 0.05 1.11 3.12 -51.93 -0.16 0.95 16 29 H -0.02 -0.53 7.41 -51.93 -0.38 -0.91 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.09 1.85 7.38 -51.93 -0.38 1.47 16 32 H 0.02 0.33 7.77 -51.92 -0.40 -0.08 16 33 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.77 6.38 -51.93 -0.33 0.44 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.34 4.72 7.39 -39.29 -0.29 4.43 16 45 H 0.10 1.72 7.65 -51.93 -0.40 1.32 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -28.09 339.44 -10.34 -38.42 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.33 Total: 6.55 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.65 Total: -19.22 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.81 Total: -47.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.09 -10.34 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576500322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.564 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds