Wall clock time and date at job start Mon Mar 30 2020 00:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37089 * 120.00069 * 2 1 4 4 H 1.08002 * 120.00260 * 205.14755 * 3 2 1 5 5 C 1.38956 * 120.00351 * 25.14280 * 3 2 1 6 6 N 1.31408 * 119.99609 * 11.73221 * 5 3 2 7 7 Si 1.86798 * 120.00017 * 191.73510 * 5 3 2 8 8 H 1.48493 * 109.47321 * 60.00288 * 7 5 3 9 9 H 1.48509 * 109.46686 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47124 * 299.99677 * 7 5 3 11 11 C 1.34773 * 119.99892 * 179.97438 * 2 1 3 12 12 O 1.21292 * 120.00217 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99835 * 0.02562 * 11 2 1 14 14 H 1.08997 * 109.46155 * 40.03290 * 13 11 2 15 15 C 1.53032 * 109.44281 * 280.07487 * 13 11 2 16 16 C 1.53122 * 109.29789 * 180.87648 * 15 13 11 17 17 C 1.53159 * 109.11542 * 57.68563 * 16 15 13 18 18 H 1.08995 * 109.54829 * 181.96268 * 17 16 15 19 19 C 1.53022 * 109.31504 * 61.91890 * 17 16 15 20 20 C 1.52994 * 109.49343 * 180.49902 * 19 17 16 21 21 C 1.52995 * 109.47209 * 60.04377 * 20 19 17 22 22 C 1.53000 * 109.44781 * 299.96140 * 21 20 19 23 23 C 1.52971 * 109.49280 * 59.99221 * 22 21 20 24 24 H 1.08993 * 109.34579 * 180.12981 * 23 22 21 25 25 N 1.46831 * 109.56396 * 60.18555 * 23 22 21 26 26 H 1.08997 * 109.46980 * 265.08467 * 1 2 3 27 27 H 1.09007 * 109.46731 * 25.08371 * 1 2 3 28 28 H 1.08994 * 109.47101 * 145.07760 * 1 2 3 29 29 H 0.96998 * 119.99790 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.49672 * 300.82198 * 15 13 11 31 31 H 1.08989 * 109.49772 * 60.89381 * 15 13 11 32 32 H 1.09001 * 109.53023 * 177.57240 * 16 15 13 33 33 H 1.08997 * 109.53395 * 297.72279 * 16 15 13 34 34 H 1.08995 * 109.46873 * 300.50468 * 19 17 16 35 35 H 1.08996 * 109.46519 * 60.50075 * 19 17 16 36 36 H 1.08997 * 109.46893 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.47018 * 300.04407 * 20 19 17 38 38 H 1.08996 * 109.48089 * 59.95427 * 21 20 19 39 39 H 1.09007 * 109.47669 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47450 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46819 * 299.99583 * 22 21 20 42 42 H 1.00908 * 110.99703 * 53.96606 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1538 1.2316 -0.3975 5 6 1.5546 2.3337 0.5113 6 7 0.4386 2.2430 1.1992 7 14 2.3397 4.0035 0.2206 8 1 2.4240 4.2635 -1.2390 9 1 1.5149 5.0571 0.8648 10 1 3.7045 4.0174 0.8056 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 1 0.5226 -2.3934 -0.6609 15 6 0.9115 -2.7868 1.4212 16 6 0.1653 -4.1240 1.4213 17 6 1.0932 -5.2162 0.8811 18 1 0.5577 -6.1648 0.8454 19 6 2.3086 -5.3486 1.8013 20 6 3.2445 -6.4303 1.2584 21 6 3.7100 -6.0436 -0.1467 22 6 2.4953 -5.9119 -1.0676 23 6 1.5583 -4.8312 -0.5252 24 1 0.6929 -4.7410 -1.1815 25 7 2.2677 -3.5467 -0.4725 26 1 -0.3633 -0.0881 1.0239 27 1 -0.3633 0.9308 -0.4357 28 1 -0.3633 -0.8426 -0.5883 29 1 0.0228 3.0433 1.5565 30 1 1.7728 -2.8507 2.0862 31 1 0.2439 -1.9970 1.7653 32 1 -0.1365 -4.3727 2.4388 33 1 -0.7181 -4.0484 0.7873 34 1 2.8384 -4.3970 1.8425 35 1 1.9777 -5.6239 2.8027 36 1 4.1099 -6.5246 1.9145 37 1 2.7145 -7.3818 1.2166 38 1 4.2394 -5.0917 -0.1052 39 1 4.3773 -6.8140 -0.5334 40 1 2.8264 -5.6360 -2.0687 41 1 1.9660 -6.8639 -1.1091 42 1 2.6675 -3.3173 -1.3702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578432803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:32 Heat of formation + Delta-G solvation = -43.186677 kcal Electronic energy + Delta-G solvation = -21766.021223 eV Core-core repulsion = 18745.163490 eV Total energy + Delta-G solvation = -3020.857732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03762 -38.09488 -34.90174 -34.45446 -32.77218 -31.59647 -29.98174 -28.86483 -26.34875 -25.10292 -23.81824 -22.60717 -22.10269 -20.66023 -18.85834 -17.99774 -16.80509 -16.03946 -15.83319 -15.28180 -14.66884 -14.38994 -14.07635 -13.99842 -13.81677 -13.28812 -13.12501 -12.56466 -12.43952 -12.19418 -12.08213 -11.80819 -11.58244 -11.34347 -11.25093 -11.12484 -10.84214 -10.74113 -10.56889 -10.47928 -10.37022 -10.18368 -10.09579 -9.87843 -9.63854 -8.95657 -8.24483 -7.82609 -7.58821 -6.27540 -3.84496 3.21594 3.26589 3.30611 3.94939 4.11567 4.40558 4.79721 4.85512 5.03021 5.06340 5.14785 5.30242 5.33506 5.45890 5.53569 5.59458 5.64544 5.70164 5.76219 5.79827 5.92274 5.96138 6.05272 6.07116 6.10219 6.28451 6.29243 6.35924 6.41920 6.44743 6.54095 6.57068 6.72295 6.86636 6.88289 7.22745 7.43384 7.60277 7.80607 8.21808 8.56031 9.25534 9.48148 10.07285 10.77408 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.005110 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.536022 B = 5478.396402 C = 5778.083849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.304 4.304 4 H 0.095 0.905 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.452 3.548 12 O -0.572 6.572 13 C 0.084 3.916 14 H 0.043 0.957 15 C -0.105 4.105 16 C -0.115 4.115 17 C -0.076 4.076 18 H 0.065 0.935 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.109 4.109 23 C 0.094 3.906 24 H 0.030 0.970 25 N -0.655 5.655 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -14.266 -1.538 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.432 4.432 4 H 0.113 0.887 5 C -0.172 4.172 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.239 3.761 12 O -0.454 6.454 13 C -0.029 4.029 14 H 0.061 0.939 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.095 4.095 18 H 0.083 0.917 19 C -0.148 4.148 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.016 4.016 24 H 0.048 0.952 25 N -0.288 5.288 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.920 -14.214 -0.827 14.367 hybrid contribution -0.560 1.073 -0.830 1.468 sum -2.479 -13.141 -1.657 13.475 Atomic orbital electron populations 1.21498 0.81573 0.99746 1.00304 1.43556 1.05263 1.04675 1.63401 1.19564 1.00942 0.84359 1.38383 0.88679 1.25331 0.96653 1.00059 0.95200 1.69973 1.19243 1.29702 1.33499 0.86013 0.79089 0.81090 0.78580 1.20008 1.21003 1.19822 1.19946 0.88106 0.84381 0.83619 1.90519 1.13714 1.86803 1.54404 1.21332 0.93616 0.90989 0.97012 0.93894 1.21508 1.00484 0.96588 0.95719 1.21645 0.97639 0.95179 1.00790 1.21158 0.96100 0.97559 0.94708 0.91681 1.21544 0.95893 1.00484 0.96834 1.21452 0.98870 0.97960 0.96713 1.21424 0.97001 1.02081 0.94569 1.21532 0.96854 0.97652 0.98688 1.21416 0.94395 0.90170 0.95661 0.95250 1.59946 1.34446 1.00526 1.33909 0.93065 0.90807 0.95899 0.92306 0.90666 0.91062 0.91891 0.92476 0.89687 0.93209 0.92598 0.93167 0.90118 0.93262 0.92351 0.92119 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 7.86 59.85 0.47 3.01 16 2 N -0.45 -11.59 3.01 -122.19 -0.37 -11.95 16 3 C -0.30 -8.58 9.23 -14.93 -0.14 -8.72 16 4 H 0.10 2.81 7.46 -52.49 -0.39 2.41 16 5 C 0.03 0.81 5.06 -17.47 -0.09 0.72 16 6 N -0.88 -23.78 10.83 55.50 0.60 -23.18 16 7 Si 0.93 21.00 29.57 -169.99 -5.03 15.97 16 8 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.45 11.10 6.79 -10.99 -0.07 11.02 16 12 O -0.57 -16.05 16.24 5.55 0.09 -15.96 16 13 C 0.08 1.58 2.12 -68.87 -0.15 1.43 16 14 H 0.04 0.78 6.36 -51.93 -0.33 0.45 16 15 C -0.10 -1.81 4.92 -26.65 -0.13 -1.94 16 16 C -0.11 -1.56 5.51 -26.59 -0.15 -1.71 16 17 C -0.08 -0.98 2.51 -90.51 -0.23 -1.21 16 18 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.11 -1.47 4.75 -26.72 -0.13 -1.59 16 20 C -0.11 -1.33 5.92 -26.74 -0.16 -1.49 16 21 C -0.11 -1.39 5.77 -26.73 -0.15 -1.54 16 22 C -0.11 -1.28 5.55 -26.75 -0.15 -1.43 16 23 C 0.09 1.27 2.61 -67.74 -0.18 1.09 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 25 N -0.66 -11.04 4.27 -101.01 -0.43 -11.48 16 26 H 0.05 1.17 7.09 -51.93 -0.37 0.80 16 27 H 0.07 1.76 6.78 -51.93 -0.35 1.41 16 28 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 31 H 0.07 1.29 6.77 -51.94 -0.35 0.94 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.19 7.61 -51.93 -0.40 0.80 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.34 5.93 8.64 -39.29 -0.34 5.59 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -30.00 312.92 -8.52 -38.52 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.86 Total: 5.72 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.25 Total: -2.36 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.20 Total: -46.61 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.09 Total: -15.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.00 -8.52 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578432803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.667 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds