Wall clock time and date at job start Mon Mar 30 2020 00:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37089 * 120.00069 * 2 1 4 4 H 1.08002 * 120.00260 * 205.14755 * 3 2 1 5 5 C 1.38956 * 120.00351 * 25.14280 * 3 2 1 6 6 N 1.31408 * 119.99609 * 11.73221 * 5 3 2 7 7 Si 1.86798 * 120.00017 * 191.73510 * 5 3 2 8 8 H 1.48493 * 109.47321 * 60.00288 * 7 5 3 9 9 H 1.48509 * 109.46686 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47124 * 299.99677 * 7 5 3 11 11 C 1.34773 * 119.99892 * 179.97438 * 2 1 3 12 12 O 1.21292 * 120.00217 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99835 * 0.02562 * 11 2 1 14 14 H 1.08997 * 109.46155 * 40.03290 * 13 11 2 15 15 C 1.53032 * 109.44281 * 280.07487 * 13 11 2 16 16 C 1.53122 * 109.29789 * 180.87648 * 15 13 11 17 17 C 1.53159 * 109.11542 * 57.68563 * 16 15 13 18 18 H 1.08995 * 109.54829 * 181.96268 * 17 16 15 19 19 C 1.53022 * 109.31504 * 61.91890 * 17 16 15 20 20 C 1.52994 * 109.49343 * 180.49902 * 19 17 16 21 21 C 1.52995 * 109.47209 * 60.04377 * 20 19 17 22 22 C 1.53000 * 109.44781 * 299.96140 * 21 20 19 23 23 C 1.52971 * 109.49280 * 59.99221 * 22 21 20 24 24 H 1.08993 * 109.34579 * 180.12981 * 23 22 21 25 25 N 1.46831 * 109.56396 * 60.18555 * 23 22 21 26 26 H 1.08997 * 109.46980 * 265.08467 * 1 2 3 27 27 H 1.09007 * 109.46731 * 25.08371 * 1 2 3 28 28 H 1.08994 * 109.47101 * 145.07760 * 1 2 3 29 29 H 0.96998 * 119.99790 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.49672 * 300.82198 * 15 13 11 31 31 H 1.08989 * 109.49772 * 60.89381 * 15 13 11 32 32 H 1.09001 * 109.53023 * 177.57240 * 16 15 13 33 33 H 1.08997 * 109.53395 * 297.72279 * 16 15 13 34 34 H 1.08995 * 109.46873 * 300.50468 * 19 17 16 35 35 H 1.08996 * 109.46519 * 60.50075 * 19 17 16 36 36 H 1.08997 * 109.46893 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.47018 * 300.04407 * 20 19 17 38 38 H 1.08996 * 109.48089 * 59.95427 * 21 20 19 39 39 H 1.09007 * 109.47669 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47450 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46819 * 299.99583 * 22 21 20 42 42 H 1.00908 * 110.99703 * 53.96606 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1538 1.2316 -0.3975 5 6 1.5546 2.3337 0.5113 6 7 0.4386 2.2430 1.1992 7 14 2.3397 4.0035 0.2206 8 1 2.4240 4.2635 -1.2390 9 1 1.5149 5.0571 0.8648 10 1 3.7045 4.0174 0.8056 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 1 0.5226 -2.3934 -0.6609 15 6 0.9115 -2.7868 1.4212 16 6 0.1653 -4.1240 1.4213 17 6 1.0932 -5.2162 0.8811 18 1 0.5577 -6.1648 0.8454 19 6 2.3086 -5.3486 1.8013 20 6 3.2445 -6.4303 1.2584 21 6 3.7100 -6.0436 -0.1467 22 6 2.4953 -5.9119 -1.0676 23 6 1.5583 -4.8312 -0.5252 24 1 0.6929 -4.7410 -1.1815 25 7 2.2677 -3.5467 -0.4725 26 1 -0.3633 -0.0881 1.0239 27 1 -0.3633 0.9308 -0.4357 28 1 -0.3633 -0.8426 -0.5883 29 1 0.0228 3.0433 1.5565 30 1 1.7728 -2.8507 2.0862 31 1 0.2439 -1.9970 1.7653 32 1 -0.1365 -4.3727 2.4388 33 1 -0.7181 -4.0484 0.7873 34 1 2.8384 -4.3970 1.8425 35 1 1.9777 -5.6239 2.8027 36 1 4.1099 -6.5246 1.9145 37 1 2.7145 -7.3818 1.2166 38 1 4.2394 -5.0917 -0.1052 39 1 4.3773 -6.8140 -0.5334 40 1 2.8264 -5.6360 -2.0687 41 1 1.9660 -6.8639 -1.1091 42 1 2.6675 -3.3173 -1.3702 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578432803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:32 Heat of formation + Delta-G solvation = -61.928778 kcal Electronic energy + Delta-G solvation = -21766.833941 eV Core-core repulsion = 18745.163490 eV Total energy + Delta-G solvation = -3021.670451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36895 -39.79703 -36.67710 -35.97277 -33.94700 -33.61306 -31.24388 -29.97371 -28.26299 -26.84228 -25.28349 -24.01186 -23.13634 -21.76423 -20.56640 -19.20831 -18.85766 -17.84862 -17.20193 -16.52305 -16.32634 -16.02350 -15.70408 -15.24657 -15.12540 -14.71731 -14.38169 -14.09390 -13.88289 -13.57028 -13.32805 -13.17535 -13.14183 -13.08383 -12.85957 -12.65566 -12.34523 -12.30244 -12.15593 -11.96271 -11.70859 -11.57686 -11.19825 -10.99834 -10.88946 -10.68737 -10.14909 -9.64309 -9.15662 -8.33273 -5.99419 1.38617 1.39607 1.50304 2.04445 2.26766 2.88409 3.08374 3.40162 3.76621 3.83663 3.91666 4.05205 4.12545 4.17547 4.34945 4.43858 4.45553 4.60198 4.64997 4.68105 4.71049 4.79885 4.87943 4.97699 5.00552 5.04813 5.07368 5.13314 5.21047 5.27953 5.36020 5.43458 5.43974 5.49423 5.52132 5.57309 5.77966 6.02901 6.23389 6.48784 6.53830 7.19150 7.48371 8.07704 8.69525 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.005110 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.536022 B = 5478.396402 C = 5778.083849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.464 5.464 3 C -0.345 4.345 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.989 3.011 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.279 1.279 11 C 0.442 3.558 12 O -0.619 6.619 13 C 0.099 3.901 14 H 0.058 0.942 15 C -0.100 4.100 16 C -0.107 4.107 17 C -0.074 4.074 18 H 0.097 0.903 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.105 4.105 23 C 0.090 3.910 24 H 0.041 0.959 25 N -0.666 5.666 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.273 0.727 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -16.076 -1.823 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.184 5.184 3 C -0.473 4.473 4 H 0.086 0.914 5 C -0.203 4.203 6 N -0.536 5.536 7 Si 0.812 3.188 8 H -0.192 1.192 9 H -0.193 1.193 10 H -0.204 1.204 11 C 0.231 3.769 12 O -0.505 6.505 13 C -0.014 4.014 14 H 0.075 0.925 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.115 0.885 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.019 4.019 24 H 0.059 0.941 25 N -0.299 5.299 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.637 -16.041 -1.108 16.486 hybrid contribution 0.002 1.628 -0.709 1.776 sum -3.635 -14.413 -1.817 14.974 Atomic orbital electron populations 1.21428 0.79706 1.00399 1.00341 1.43823 1.06535 1.04595 1.63424 1.19533 1.00778 0.86393 1.40561 0.91446 1.26078 0.97070 1.02901 0.94281 1.70041 1.19661 1.30882 1.32993 0.85077 0.77939 0.76926 0.78859 1.19150 1.19319 1.20440 1.21001 0.88002 0.86005 0.81893 1.90472 1.16012 1.87787 1.56181 1.21144 0.93230 0.88561 0.98464 0.92497 1.21456 0.99682 0.98831 0.93888 1.21632 0.97695 0.92779 1.02385 1.21221 0.95749 0.98564 0.93756 0.88480 1.21492 0.96249 0.99020 0.97921 1.21441 0.98753 0.98377 0.96094 1.21392 0.97478 1.00750 0.95442 1.21533 0.96277 0.98115 0.98303 1.21613 0.94939 0.88678 0.96674 0.94087 1.59947 1.34935 1.01349 1.33685 0.93778 0.92440 0.92229 0.91716 0.93200 0.92294 0.90252 0.90809 0.93782 0.92148 0.92816 0.90670 0.93689 0.91652 0.92241 0.89349 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.62 7.86 127.77 1.00 6.62 16 2 N -0.46 -24.73 3.01 -658.88 -1.98 -26.71 16 3 C -0.34 -20.19 9.23 84.04 0.78 -19.42 16 4 H 0.07 4.23 7.46 -2.91 -0.02 4.20 16 5 C 0.00 -0.09 5.06 84.93 0.43 0.34 16 6 N -0.90 -48.44 10.83 21.66 0.23 -48.20 16 7 Si 0.99 43.42 29.57 68.60 2.03 45.45 16 8 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 C 0.44 22.53 6.79 87.66 0.60 23.13 16 12 O -0.62 -36.75 16.24 -3.07 -0.05 -36.80 16 13 C 0.10 3.74 2.12 44.19 0.09 3.84 16 14 H 0.06 1.98 6.36 -2.39 -0.02 1.97 16 15 C -0.10 -3.44 4.92 30.65 0.15 -3.29 16 16 C -0.11 -2.62 5.51 30.69 0.17 -2.46 16 17 C -0.07 -1.67 2.51 -10.72 -0.03 -1.70 16 18 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 19 C -0.11 -2.74 4.75 30.60 0.15 -2.59 16 20 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 21 C -0.11 -2.60 5.77 30.59 0.18 -2.43 16 22 C -0.10 -2.15 5.55 30.58 0.17 -1.99 16 23 C 0.09 2.22 2.61 44.93 0.12 2.33 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 25 N -0.67 -22.46 4.27 -473.49 -2.02 -24.49 16 26 H 0.04 2.03 7.09 -2.39 -0.02 2.01 16 27 H 0.06 2.75 6.78 -2.38 -0.02 2.74 16 28 H 0.06 2.20 6.15 -2.39 -0.01 2.19 16 29 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.05 1.96 6.54 -2.38 -0.02 1.94 16 31 H 0.06 2.14 6.77 -2.39 -0.02 2.12 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.48 5.95 -2.39 -0.01 1.46 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.04 1.36 7.61 -2.39 -0.02 1.34 16 39 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.34 11.88 8.64 -89.69 -0.77 11.11 16 Total: -1.00 -68.09 312.92 2.42 -65.66 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.23 Total: 24.85 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 3.98 Total: 0.24 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -3.77 Total: -99.40 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.05 Total: -36.80 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.09 2.42 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578432803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.735 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds