Wall clock time and date at job start Mon Mar 30 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00249 * 2 1 4 4 H 1.08005 * 120.00047 * 158.26296 * 3 2 1 5 5 C 1.38951 * 120.00201 * 338.26058 * 3 2 1 6 6 N 1.31416 * 119.99588 * 348.69801 * 5 3 2 7 7 Si 1.86794 * 120.00212 * 168.69164 * 5 3 2 8 8 H 1.48502 * 109.46981 * 179.97438 * 7 5 3 9 9 H 1.48505 * 109.47479 * 300.00131 * 7 5 3 10 10 H 1.48506 * 109.47032 * 60.00365 * 7 5 3 11 11 C 1.34781 * 119.99659 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99903 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00280 * 0.02562 * 11 2 1 14 14 H 1.09001 * 109.44916 * 39.99731 * 13 11 2 15 15 C 1.53027 * 109.45218 * 280.04599 * 13 11 2 16 16 C 1.53138 * 109.32700 * 180.88251 * 15 13 11 17 17 C 1.53079 * 109.07708 * 57.62783 * 16 15 13 18 18 H 1.09007 * 109.57867 * 62.18310 * 17 16 15 19 19 C 1.52970 * 109.59915 * 182.35496 * 17 16 15 20 20 C 1.53020 * 109.39428 * 179.97438 * 19 17 16 21 21 C 1.52988 * 109.53331 * 300.06383 * 20 19 17 22 22 C 1.53028 * 109.53550 * 59.84476 * 21 20 19 23 23 C 1.52975 * 109.40182 * 300.07015 * 22 21 20 24 24 H 1.09000 * 109.43912 * 300.37289 * 23 22 21 25 25 N 1.46799 * 109.70051 * 180.28315 * 23 22 21 26 26 H 1.08999 * 109.46942 * 85.76480 * 1 2 3 27 27 H 1.08999 * 109.47151 * 205.76230 * 1 2 3 28 28 H 1.09002 * 109.46766 * 325.76426 * 1 2 3 29 29 H 0.97002 * 119.99642 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.49185 * 300.86374 * 15 13 11 31 31 H 1.08999 * 109.49422 * 60.94808 * 15 13 11 32 32 H 1.08998 * 109.55562 * 297.74413 * 16 15 13 33 33 H 1.08998 * 109.59476 * 177.53763 * 16 15 13 34 34 H 1.09003 * 109.48122 * 59.97306 * 19 17 16 35 35 H 1.09003 * 109.49007 * 299.93005 * 19 17 16 36 36 H 1.09004 * 109.46199 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.45046 * 60.08041 * 20 19 17 38 38 H 1.08995 * 109.45776 * 299.82367 * 21 20 19 39 39 H 1.08999 * 109.46124 * 179.85803 * 21 20 19 40 40 H 1.09003 * 109.48103 * 180.09289 * 22 21 20 41 41 H 1.09005 * 109.49465 * 60.05771 * 22 21 20 42 42 H 1.00901 * 110.99952 * 302.15977 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1730 1.2204 0.3464 5 6 1.5300 2.3478 -0.4457 6 7 0.3759 2.2775 -1.0703 7 14 2.3360 4.0079 -0.1569 8 1 1.4791 5.0797 -0.7245 9 1 2.5052 4.2291 1.3018 10 1 3.6650 4.0348 -0.8190 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.5222 -2.3931 -0.6605 15 6 0.9120 -2.7875 1.4212 16 6 0.1659 -4.1248 1.4219 17 6 1.0933 -5.2155 0.8799 18 1 1.9595 -5.3165 1.5339 19 6 0.3408 -6.5459 0.8203 20 6 1.2717 -7.6323 0.2776 21 6 1.7428 -7.2478 -1.1263 22 6 2.4918 -5.9147 -1.0674 23 6 1.5579 -4.8305 -0.5265 24 1 0.6910 -4.7389 -1.1809 25 7 2.2682 -3.5469 -0.4737 26 1 -0.3633 0.0759 -1.0249 27 1 -0.3633 -0.9255 0.4467 28 1 -0.3633 0.8496 0.5782 29 1 -0.0575 3.0877 -1.3811 30 1 1.7735 -2.8508 2.0859 31 1 0.2437 -1.9982 1.7654 32 1 -0.7178 -4.0499 0.7881 33 1 -0.1353 -4.3749 2.4391 34 1 -0.5234 -6.4457 0.1636 35 1 0.0072 -6.8202 1.8211 36 1 0.7364 -8.5809 0.2342 37 1 2.1349 -7.7327 0.9356 38 1 0.8798 -7.1507 -1.7849 39 1 2.4077 -8.0212 -1.5107 40 1 2.8256 -5.6408 -2.0683 41 1 3.3558 -6.0116 -0.4099 42 1 3.0954 -3.6147 0.1001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578432806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:39 Heat of formation + Delta-G solvation = -49.469064 kcal Electronic energy + Delta-G solvation = -21399.746150 eV Core-core repulsion = 18378.615993 eV Total energy + Delta-G solvation = -3021.130157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06016 -38.19501 -35.41937 -34.53381 -32.63475 -31.61883 -30.04686 -29.08151 -26.35642 -25.09779 -23.65190 -22.60374 -21.89355 -20.30671 -20.06244 -18.64617 -16.84050 -16.23368 -15.41299 -14.91878 -14.84734 -14.62603 -14.39209 -13.82861 -13.77699 -13.49610 -13.30726 -12.96832 -12.61433 -12.06251 -12.01198 -11.65715 -11.47014 -11.45613 -11.25209 -11.06454 -11.03979 -10.97907 -10.77421 -10.66385 -10.47702 -10.36503 -10.27375 -10.18463 -9.91739 -8.96917 -8.34490 -7.80954 -7.61030 -6.24165 -3.80960 3.22435 3.27499 3.31584 3.89921 4.15014 4.39637 4.62465 4.71996 4.86361 4.94719 5.08853 5.15320 5.24292 5.29340 5.37688 5.42112 5.52671 5.53235 5.60049 5.66390 5.79340 5.84560 5.93252 6.01479 6.03520 6.08129 6.10657 6.12204 6.19712 6.26433 6.36335 6.41013 6.47360 6.53493 6.92861 7.29096 7.42287 7.61969 7.84782 8.19821 8.56108 9.25959 9.50002 10.06546 10.78815 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043066 B = 0.004488 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.012711 B = 6236.954414 C = 6478.021959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.447 5.447 3 C -0.304 4.304 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.285 1.285 9 H -0.275 1.275 10 H -0.273 1.273 11 C 0.457 3.543 12 O -0.583 6.583 13 C 0.083 3.917 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.121 4.121 18 H 0.068 0.932 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.111 4.111 23 C 0.095 3.905 24 H 0.077 0.923 25 N -0.660 5.660 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.266 0.734 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -15.945 3.280 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.166 5.166 3 C -0.432 4.432 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.210 1.210 9 H -0.200 1.200 10 H -0.198 1.198 11 C 0.244 3.756 12 O -0.467 6.467 13 C -0.031 4.031 14 H 0.107 0.893 15 C -0.188 4.188 16 C -0.149 4.149 17 C -0.141 4.141 18 H 0.086 0.914 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.015 4.015 24 H 0.095 0.905 25 N -0.290 5.290 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.563 -15.602 2.505 16.199 hybrid contribution -0.005 0.756 1.041 1.287 sum -3.568 -14.847 3.546 15.676 Atomic orbital electron populations 1.21586 0.81301 0.98410 1.02067 1.43527 1.05422 1.04641 1.63039 1.19603 0.99055 0.83768 1.40781 0.88502 1.25312 0.96503 0.99941 0.95561 1.70002 1.16834 1.29101 1.36600 0.85997 0.79025 0.80978 0.78664 1.20996 1.20025 1.19827 1.19821 0.87940 0.84417 0.83446 1.90490 1.13956 1.86898 1.55353 1.21382 0.95756 0.91448 0.94473 0.89289 1.22251 1.00900 0.97526 0.98104 1.21610 0.98178 0.94304 1.00797 1.21937 0.98749 0.94667 0.98757 0.91390 1.21526 0.98195 0.94341 1.00718 1.21544 0.99347 0.97968 0.96840 1.21508 1.00103 0.97002 0.96853 1.21521 0.97938 0.93476 1.01951 1.21573 0.96680 0.88896 0.94370 0.90524 1.60411 1.08087 1.02723 1.57793 0.92272 0.95282 0.91579 0.92331 0.91777 0.90667 0.91845 0.92108 0.91976 0.92340 0.92325 0.92181 0.91981 0.92083 0.91041 0.92138 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.20 59.85 0.49 2.99 16 2 N -0.45 -11.67 3.02 -122.19 -0.37 -12.04 16 3 C -0.30 -8.66 9.31 -14.94 -0.14 -8.80 16 4 H 0.10 2.88 7.39 -52.48 -0.39 2.50 16 5 C 0.03 0.79 5.13 -17.47 -0.09 0.70 16 6 N -0.89 -24.00 10.55 55.50 0.59 -23.41 16 7 Si 0.93 21.16 29.57 -169.99 -5.03 16.13 16 8 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.46 11.36 6.88 -10.99 -0.08 11.28 16 12 O -0.58 -16.50 15.88 5.55 0.09 -16.41 16 13 C 0.08 1.58 1.98 -68.84 -0.14 1.44 16 14 H 0.09 1.68 7.14 -51.93 -0.37 1.31 16 15 C -0.15 -2.36 5.06 -26.65 -0.13 -2.50 16 16 C -0.11 -1.40 5.30 -26.62 -0.14 -1.55 16 17 C -0.12 -1.44 2.12 -90.57 -0.19 -1.63 16 18 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 19 C -0.11 -1.07 5.22 -26.74 -0.14 -1.21 16 20 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 21 C -0.12 -1.11 5.92 -26.72 -0.16 -1.27 16 22 C -0.11 -1.31 5.50 -26.73 -0.15 -1.45 16 23 C 0.10 1.29 2.28 -67.76 -0.15 1.14 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 N -0.66 -11.61 5.93 -100.98 -0.60 -12.21 16 26 H 0.06 1.41 7.44 -51.93 -0.39 1.03 16 27 H 0.03 0.54 4.64 -51.93 -0.24 0.30 16 28 H 0.07 1.56 7.15 -51.93 -0.37 1.19 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.22 6.41 -51.93 -0.33 0.88 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.35 6.36 8.25 -39.29 -0.32 6.04 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -30.49 317.65 -8.75 -39.25 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.04 Total: 6.01 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.18 Total: -2.10 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.38 Total: -47.67 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.49 -8.75 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578432806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.221 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds