Wall clock time and date at job start Mon Mar 30 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00249 * 2 1 4 4 H 1.08005 * 120.00047 * 158.26296 * 3 2 1 5 5 C 1.38951 * 120.00201 * 338.26058 * 3 2 1 6 6 N 1.31416 * 119.99588 * 348.69801 * 5 3 2 7 7 Si 1.86794 * 120.00212 * 168.69164 * 5 3 2 8 8 H 1.48502 * 109.46981 * 179.97438 * 7 5 3 9 9 H 1.48505 * 109.47479 * 300.00131 * 7 5 3 10 10 H 1.48506 * 109.47032 * 60.00365 * 7 5 3 11 11 C 1.34781 * 119.99659 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99903 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00280 * 0.02562 * 11 2 1 14 14 H 1.09001 * 109.44916 * 39.99731 * 13 11 2 15 15 C 1.53027 * 109.45218 * 280.04599 * 13 11 2 16 16 C 1.53138 * 109.32700 * 180.88251 * 15 13 11 17 17 C 1.53079 * 109.07708 * 57.62783 * 16 15 13 18 18 H 1.09007 * 109.57867 * 62.18310 * 17 16 15 19 19 C 1.52970 * 109.59915 * 182.35496 * 17 16 15 20 20 C 1.53020 * 109.39428 * 179.97438 * 19 17 16 21 21 C 1.52988 * 109.53331 * 300.06383 * 20 19 17 22 22 C 1.53028 * 109.53550 * 59.84476 * 21 20 19 23 23 C 1.52975 * 109.40182 * 300.07015 * 22 21 20 24 24 H 1.09000 * 109.43912 * 300.37289 * 23 22 21 25 25 N 1.46799 * 109.70051 * 180.28315 * 23 22 21 26 26 H 1.08999 * 109.46942 * 85.76480 * 1 2 3 27 27 H 1.08999 * 109.47151 * 205.76230 * 1 2 3 28 28 H 1.09002 * 109.46766 * 325.76426 * 1 2 3 29 29 H 0.97002 * 119.99642 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.49185 * 300.86374 * 15 13 11 31 31 H 1.08999 * 109.49422 * 60.94808 * 15 13 11 32 32 H 1.08998 * 109.55562 * 297.74413 * 16 15 13 33 33 H 1.08998 * 109.59476 * 177.53763 * 16 15 13 34 34 H 1.09003 * 109.48122 * 59.97306 * 19 17 16 35 35 H 1.09003 * 109.49007 * 299.93005 * 19 17 16 36 36 H 1.09004 * 109.46199 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.45046 * 60.08041 * 20 19 17 38 38 H 1.08995 * 109.45776 * 299.82367 * 21 20 19 39 39 H 1.08999 * 109.46124 * 179.85803 * 21 20 19 40 40 H 1.09003 * 109.48103 * 180.09289 * 22 21 20 41 41 H 1.09005 * 109.49465 * 60.05771 * 22 21 20 42 42 H 1.00901 * 110.99952 * 302.15977 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1730 1.2204 0.3464 5 6 1.5300 2.3478 -0.4457 6 7 0.3759 2.2775 -1.0703 7 14 2.3360 4.0079 -0.1569 8 1 1.4791 5.0797 -0.7245 9 1 2.5052 4.2291 1.3018 10 1 3.6650 4.0348 -0.8190 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.5222 -2.3931 -0.6605 15 6 0.9120 -2.7875 1.4212 16 6 0.1659 -4.1248 1.4219 17 6 1.0933 -5.2155 0.8799 18 1 1.9595 -5.3165 1.5339 19 6 0.3408 -6.5459 0.8203 20 6 1.2717 -7.6323 0.2776 21 6 1.7428 -7.2478 -1.1263 22 6 2.4918 -5.9147 -1.0674 23 6 1.5579 -4.8305 -0.5265 24 1 0.6910 -4.7389 -1.1809 25 7 2.2682 -3.5469 -0.4737 26 1 -0.3633 0.0759 -1.0249 27 1 -0.3633 -0.9255 0.4467 28 1 -0.3633 0.8496 0.5782 29 1 -0.0575 3.0877 -1.3811 30 1 1.7735 -2.8508 2.0859 31 1 0.2437 -1.9982 1.7654 32 1 -0.7178 -4.0499 0.7881 33 1 -0.1353 -4.3749 2.4391 34 1 -0.5234 -6.4457 0.1636 35 1 0.0072 -6.8202 1.8211 36 1 0.7364 -8.5809 0.2342 37 1 2.1349 -7.7327 0.9356 38 1 0.8798 -7.1507 -1.7849 39 1 2.4077 -8.0212 -1.5107 40 1 2.8256 -5.6408 -2.0683 41 1 3.3558 -6.0116 -0.4099 42 1 3.0954 -3.6147 0.1001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578432806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:39 Heat of formation + Delta-G solvation = -69.044416 kcal Electronic energy + Delta-G solvation = -21400.595001 eV Core-core repulsion = 18378.615993 eV Total energy + Delta-G solvation = -3021.979008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37452 -39.83424 -36.82831 -36.36476 -33.79183 -33.57319 -31.28166 -30.08917 -28.27174 -26.84132 -25.14936 -23.78785 -22.87355 -21.47133 -21.12725 -20.24897 -18.90372 -17.97603 -16.86463 -16.32912 -16.28415 -16.07811 -15.60134 -15.41379 -15.17275 -14.82379 -14.43747 -14.31688 -13.84551 -13.55619 -13.36047 -13.16807 -13.09059 -12.92213 -12.67950 -12.54259 -12.46925 -12.25857 -12.14674 -12.12188 -11.97134 -11.69441 -11.35746 -11.19972 -11.02180 -10.94087 -10.23886 -9.70021 -9.15444 -8.31185 -5.97515 1.38638 1.39720 1.50719 2.01398 2.27083 2.88880 3.08921 3.42000 3.66454 3.80260 3.83815 3.97322 4.14290 4.16780 4.27475 4.29381 4.46089 4.50718 4.53237 4.61080 4.66960 4.70781 4.80434 4.93490 5.00947 5.01623 5.06717 5.13014 5.15004 5.26052 5.30677 5.34569 5.36710 5.39083 5.44281 5.49708 5.60288 6.00917 6.19659 6.44467 6.51337 7.17769 7.48270 8.04808 8.69551 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043066 B = 0.004488 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.012711 B = 6236.954414 C = 6478.021959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.463 5.463 3 C -0.346 4.346 4 H 0.070 0.930 5 C -0.003 4.003 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.268 1.268 9 H -0.267 1.267 10 H -0.278 1.278 11 C 0.444 3.556 12 O -0.628 6.628 13 C 0.097 3.903 14 H 0.093 0.907 15 C -0.141 4.141 16 C -0.104 4.104 17 C -0.115 4.115 18 H 0.061 0.939 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.108 4.108 23 C 0.095 3.905 24 H 0.076 0.924 25 N -0.678 5.678 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.273 0.727 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 -17.400 3.794 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.181 5.181 3 C -0.474 4.474 4 H 0.088 0.912 5 C -0.204 4.204 6 N -0.537 5.537 7 Si 0.813 3.187 8 H -0.193 1.193 9 H -0.192 1.192 10 H -0.203 1.203 11 C 0.233 3.767 12 O -0.515 6.515 13 C -0.017 4.017 14 H 0.111 0.889 15 C -0.181 4.181 16 C -0.141 4.141 17 C -0.135 4.135 18 H 0.079 0.921 19 C -0.143 4.143 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.015 4.015 24 H 0.094 0.906 25 N -0.308 5.308 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.179 -17.079 3.015 18.100 hybrid contribution 0.518 1.203 0.831 1.552 sum -4.660 -15.876 3.847 16.987 Atomic orbital electron populations 1.21511 0.79451 0.99895 1.01236 1.43797 1.06686 1.04567 1.63093 1.19588 0.98814 0.85805 1.43187 0.91215 1.26078 0.96999 1.02771 0.94562 1.70080 1.17327 1.30302 1.35983 0.85056 0.77923 0.76809 0.78884 1.19276 1.19184 1.20350 1.20917 0.87894 0.86081 0.81767 1.90442 1.16152 1.87874 1.56998 1.21190 0.94965 0.88847 0.96673 0.88875 1.22178 1.00728 0.99750 0.95420 1.21599 0.98001 0.92093 1.02451 1.21860 0.98717 0.95911 0.97044 0.92065 1.21499 0.98116 0.92872 1.01786 1.21543 0.99366 0.98497 0.96082 1.21486 1.00178 0.95616 0.97673 1.21506 0.97863 0.94344 1.00933 1.21688 0.96634 0.87363 0.95787 0.90616 1.60416 1.08216 1.04361 1.57829 0.93719 0.91277 0.92943 0.91725 0.93020 0.90872 0.90747 0.89980 0.91365 0.90998 0.90473 0.92293 0.91541 0.90884 0.92346 0.92485 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.56 8.20 127.77 1.05 6.61 16 2 N -0.46 -24.86 3.02 -658.89 -1.99 -26.85 16 3 C -0.35 -20.41 9.31 84.04 0.78 -19.63 16 4 H 0.07 4.39 7.39 -2.91 -0.02 4.37 16 5 C 0.00 -0.14 5.13 84.93 0.44 0.29 16 6 N -0.90 -48.75 10.55 21.66 0.23 -48.52 16 7 Si 0.99 43.60 29.57 68.60 2.03 45.63 16 8 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 C 0.44 22.84 6.88 87.66 0.60 23.44 16 12 O -0.63 -37.27 15.88 -3.06 -0.05 -37.32 16 13 C 0.10 3.68 1.98 44.17 0.09 3.77 16 14 H 0.09 3.45 7.14 -2.39 -0.02 3.44 16 15 C -0.14 -4.37 5.06 30.65 0.16 -4.21 16 16 C -0.10 -2.34 5.30 30.67 0.16 -2.18 16 17 C -0.12 -2.48 2.12 -10.76 -0.02 -2.50 16 18 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 19 C -0.10 -1.67 5.22 30.59 0.16 -1.51 16 20 C -0.12 -1.72 5.92 30.60 0.18 -1.53 16 21 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 22 C -0.11 -2.44 5.50 30.60 0.17 -2.27 16 23 C 0.09 2.45 2.28 44.94 0.10 2.55 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 N -0.68 -24.09 5.93 -473.40 -2.81 -26.89 16 26 H 0.04 2.14 7.44 -2.39 -0.02 2.13 16 27 H 0.07 2.53 4.64 -2.39 -0.01 2.52 16 28 H 0.05 2.50 7.15 -2.39 -0.02 2.48 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.07 2.27 6.41 -2.39 -0.02 2.26 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.34 12.84 8.25 -89.69 -0.74 12.10 16 Total: -1.00 -68.13 317.65 1.71 -66.42 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.26 Total: 26.38 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.04 Total: 1.17 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -4.57 Total: -102.27 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.05 Total: -37.32 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.13 1.71 -66.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578432806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.628 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds