Wall clock time and date at job start Mon Mar 30 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00310 * 2 1 4 4 H 1.48504 * 109.47443 * 275.30689 * 3 2 1 5 5 H 1.48510 * 109.47124 * 35.30606 * 3 2 1 6 6 H 1.48499 * 109.47304 * 155.30037 * 3 2 1 7 7 C 1.38815 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99934 * 37.24992 * 7 2 1 9 9 N 1.36935 * 119.99544 * 217.25686 * 7 2 1 10 10 C 1.46501 * 120.00366 * 37.82628 * 9 7 2 11 11 C 1.52996 * 109.47573 * 84.90141 * 10 9 7 12 12 H 1.08997 * 109.63321 * 305.39979 * 11 10 9 13 13 C 1.54305 * 109.63512 * 185.00172 * 11 10 9 14 14 C 1.45873 * 112.18902 * 161.76325 * 13 11 10 15 15 C 1.54313 * 112.18991 * 61.12001 * 14 13 11 16 16 C 1.50440 * 108.49239 * 281.46782 * 15 14 13 17 17 N 1.48003 * 112.74357 * 93.78130 * 16 15 14 18 18 C 1.47930 * 114.67561 * 317.92183 * 17 16 15 19 19 C 1.46501 * 120.00014 * 217.81975 * 9 7 2 20 20 C 1.54269 * 110.02825 * 61.41361 * 19 9 7 21 21 C 1.54895 * 104.19549 * 217.10709 * 20 19 9 22 22 C 1.54895 * 102.74799 * 37.94022 * 21 20 19 23 23 C 1.53875 * 110.03328 * 304.24951 * 19 9 7 24 24 H 0.97003 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46675 * 324.90199 * 10 9 7 26 26 H 1.08999 * 109.47202 * 204.90823 * 10 9 7 27 27 H 1.09001 * 108.93622 * 41.06474 * 13 11 10 28 28 H 1.09003 * 108.86309 * 282.41364 * 13 11 10 29 29 H 1.08995 * 108.93946 * 300.42169 * 14 13 11 30 30 H 1.09000 * 108.86889 * 181.77154 * 14 13 11 31 31 H 1.09000 * 109.63531 * 161.76335 * 15 14 13 32 32 H 1.09003 * 109.62978 * 41.16636 * 15 14 13 33 33 H 1.08996 * 108.81511 * 214.58762 * 16 15 14 34 34 H 1.09001 * 108.80751 * 332.97777 * 16 15 14 35 35 H 1.00903 * 110.99654 * 84.78152 * 17 16 15 36 36 H 1.08997 * 108.85430 * 197.34641 * 18 17 16 37 37 H 1.08991 * 108.72292 * 79.09894 * 18 17 16 38 38 H 1.08998 * 110.02196 * 182.85586 * 19 9 7 39 39 H 1.09004 * 110.48877 * 335.78062 * 20 19 9 40 40 H 1.08996 * 110.48748 * 98.43073 * 20 19 9 41 41 H 1.09001 * 110.75495 * 279.62998 * 21 20 19 42 42 H 1.09001 * 110.91815 * 156.33057 * 21 20 19 43 43 H 1.09002 * 110.48597 * 203.37791 * 22 21 20 44 44 H 1.09003 * 110.59413 * 80.79315 * 22 21 20 45 45 H 1.09004 * 110.03026 * 238.56961 * 23 19 9 46 46 H 1.09000 * 110.03240 * 359.94280 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3857 2.1111 -1.3941 5 1 1.5083 2.6177 0.8092 6 1 3.5993 1.4103 0.5850 7 6 2.0102 -1.2022 -0.0005 8 1 1.6354 -2.0418 -0.5670 9 7 3.1700 -1.3235 0.7174 10 6 3.2939 -0.6733 2.0243 11 6 2.7009 -1.5808 3.1039 12 1 1.6764 -1.8429 2.8398 13 6 2.7151 -0.8486 4.4621 14 6 1.8034 -1.4563 5.4251 15 6 2.1751 -2.9215 5.7352 16 6 1.6893 -3.7867 4.6044 17 7 2.7280 -4.0217 3.5767 18 6 3.5309 -2.8297 3.2262 19 6 4.2869 -2.1036 0.1785 20 6 4.7748 -1.4820 -1.1464 21 6 5.1447 -2.7028 -2.0251 22 6 4.0421 -3.7295 -1.6655 23 6 3.8210 -3.5325 -0.1515 24 1 -0.4850 0.8401 0.0004 25 1 2.7561 0.2748 2.0109 26 1 4.3465 -0.4907 2.2410 27 1 2.4246 0.1904 4.3068 28 1 3.7269 -0.8761 4.8667 29 1 0.7912 -1.4259 5.0219 30 1 1.8327 -0.8805 6.3501 31 1 1.6979 -3.2316 6.6648 32 1 3.2574 -3.0131 5.8275 33 1 1.3711 -4.7476 5.0086 34 1 0.8331 -3.3027 4.1345 35 1 3.3217 -4.7962 3.8332 36 1 4.0349 -3.0112 2.2769 37 1 4.2848 -2.6764 3.9982 38 1 5.1031 -2.1343 0.9003 39 1 3.9773 -0.9038 -1.6131 40 1 5.6506 -0.8563 -0.9746 41 1 6.1302 -3.0854 -1.7595 42 1 5.1038 -2.4469 -3.0839 43 1 4.3832 -4.7439 -1.8724 44 1 3.1256 -3.5164 -2.2158 45 1 4.4117 -4.2567 0.4095 46 1 2.7642 -3.6458 0.0902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:01 Heat of formation + Delta-G solvation = 9.751845 kcal Electronic energy + Delta-G solvation = -22490.715013 eV Core-core repulsion = 19607.985962 eV Total energy + Delta-G solvation = -2882.729051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.00929 -37.57556 -34.59081 -32.93559 -32.12056 -30.82813 -27.88518 -27.41008 -26.26736 -24.66565 -23.76092 -21.84350 -20.29983 -19.91477 -19.19427 -18.65413 -16.47636 -15.70138 -15.40568 -15.14939 -14.82696 -14.47583 -14.18800 -13.68278 -13.44927 -12.89957 -12.64965 -12.62064 -12.54463 -12.12049 -11.99520 -11.62440 -11.24592 -10.94053 -10.71576 -10.67578 -10.56865 -10.50364 -10.38989 -10.30225 -10.16842 -9.96711 -9.91144 -9.75658 -9.69340 -9.57573 -9.29375 -8.25869 -7.83490 -6.63001 -6.01499 -3.21705 3.41972 3.55154 3.60825 4.57895 4.63841 4.91765 4.98324 5.18683 5.28348 5.31891 5.43959 5.49033 5.50664 5.69792 5.74885 5.80192 5.85061 5.96480 6.08687 6.11805 6.16732 6.25950 6.27271 6.32280 6.36569 6.41584 6.45159 6.50027 6.52071 6.57050 6.60898 6.63258 6.68880 6.83715 6.84943 7.00081 7.05176 7.22095 7.25556 7.32835 7.58207 7.86361 8.12482 8.54341 9.14658 9.84964 10.30634 11.14669 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.008943 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.073892 B = 3130.101761 C = 4238.151682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.051 3.949 3 Si 0.832 3.168 4 H -0.293 1.293 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.261 4.261 8 H 0.076 0.924 9 N -0.590 5.590 10 C 0.161 3.839 11 C -0.105 4.105 12 H 0.093 0.907 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.147 4.147 16 C 0.064 3.936 17 N -0.695 5.695 18 C 0.078 3.922 19 C 0.172 3.828 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.129 4.129 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.330 0.670 36 H 0.084 0.916 37 H 0.008 0.992 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.864 -5.846 7.249 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.151 4.151 3 Si 0.659 3.341 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.389 4.389 8 H 0.093 0.907 9 N -0.311 5.311 10 C 0.035 3.965 11 C -0.126 4.126 12 H 0.111 0.889 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.186 4.186 16 C -0.065 4.065 17 N -0.325 5.325 18 C -0.050 4.050 19 C 0.065 3.935 20 C -0.177 4.177 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.257 -5.629 6.757 11.402 hybrid contribution 0.990 1.242 0.771 1.765 sum 8.247 -4.387 7.528 11.997 Atomic orbital electron populations 1.70148 1.06400 1.26659 1.48081 1.25441 0.94561 0.97199 0.97867 0.87487 0.82300 0.86770 0.77515 1.22080 1.22503 1.18847 1.18441 0.96949 0.95698 1.27782 0.90658 1.44195 1.12790 1.59420 1.14664 1.21078 0.96520 0.94267 0.84675 1.21594 1.02622 0.94718 0.93663 0.88920 1.20641 0.98848 1.00049 0.96137 1.20521 1.00562 0.95308 0.98661 1.21977 1.00945 0.96600 0.99102 1.21696 0.95986 0.98469 0.90374 1.60027 1.19194 1.08400 1.44878 1.21716 0.93916 0.89749 0.99614 1.21081 0.89006 0.90714 0.92668 1.22869 1.00120 0.96997 0.97757 1.22406 0.97783 0.96914 0.98878 1.22261 0.98561 0.97199 0.97557 1.22537 1.02880 0.97084 0.94275 0.93002 0.93397 0.94982 0.92395 0.93376 0.91776 0.93241 0.92212 0.92383 0.92472 0.90839 0.85327 0.89767 0.97432 0.93405 0.90049 0.93769 0.92863 0.92851 0.93443 0.91797 0.93849 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.97 55.49 0.78 -25.07 16 2 C 0.05 1.42 5.00 -17.43 -0.09 1.33 16 3 Si 0.83 21.15 26.36 -169.99 -4.48 16.67 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.26 -6.46 6.26 56.52 0.35 -6.11 16 7 C -0.26 -6.87 8.00 -15.06 -0.12 -6.99 16 8 H 0.08 2.18 7.13 -52.49 -0.37 1.80 16 9 N -0.59 -13.19 1.82 -164.39 -0.30 -13.49 16 10 C 0.16 3.39 3.80 -4.04 -0.02 3.38 16 11 C -0.10 -1.97 2.06 -91.21 -0.19 -2.15 16 12 H 0.09 2.09 7.09 -51.93 -0.37 1.73 16 13 C -0.12 -1.91 4.71 -29.42 -0.14 -2.05 16 14 C -0.11 -1.62 5.30 -29.42 -0.16 -1.77 16 15 C -0.15 -1.90 5.63 -27.32 -0.15 -2.05 16 16 C 0.06 0.91 6.02 -4.49 -0.03 0.89 16 17 N -0.69 -10.76 6.88 -114.97 -0.79 -11.55 16 18 C 0.08 1.30 5.52 -4.53 -0.02 1.27 16 19 C 0.17 3.33 2.25 -66.81 -0.15 3.18 16 20 C -0.14 -2.60 6.42 -25.07 -0.16 -2.77 16 21 C -0.12 -1.95 6.91 -24.73 -0.17 -2.12 16 22 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 23 C -0.13 -2.35 5.23 -25.61 -0.13 -2.48 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.05 1.11 4.46 -51.92 -0.23 0.88 16 26 H 0.03 0.62 7.85 -51.93 -0.41 0.21 16 27 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 28 H 0.05 0.72 7.51 -51.93 -0.39 0.33 16 29 H 0.06 0.99 7.52 -51.93 -0.39 0.60 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.76 7.08 -51.93 -0.37 0.39 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.22 6.58 -51.93 -0.34 0.88 16 35 H 0.33 4.37 8.92 -39.29 -0.35 4.02 16 36 H 0.08 1.49 3.94 -51.93 -0.20 1.29 16 37 H 0.01 0.12 6.58 -51.93 -0.34 -0.22 16 38 H 0.05 0.87 7.00 -51.93 -0.36 0.50 16 39 H 0.08 1.78 7.18 -51.93 -0.37 1.41 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.08 1.76 6.77 -51.93 -0.35 1.41 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -27.87 328.17 -9.80 -37.67 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.25 Total: 5.31 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.70 Total: -14.48 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.32 Total: -50.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.48 Total: 16.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.87 -9.80 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.418 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds