Wall clock time and date at job start Mon Mar 30 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00310 * 2 1 4 4 H 1.48504 * 109.47443 * 275.30689 * 3 2 1 5 5 H 1.48510 * 109.47124 * 35.30606 * 3 2 1 6 6 H 1.48499 * 109.47304 * 155.30037 * 3 2 1 7 7 C 1.38815 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99934 * 37.24992 * 7 2 1 9 9 N 1.36935 * 119.99544 * 217.25686 * 7 2 1 10 10 C 1.46501 * 120.00366 * 37.82628 * 9 7 2 11 11 C 1.52996 * 109.47573 * 84.90141 * 10 9 7 12 12 H 1.08997 * 109.63321 * 305.39979 * 11 10 9 13 13 C 1.54305 * 109.63512 * 185.00172 * 11 10 9 14 14 C 1.45873 * 112.18902 * 161.76325 * 13 11 10 15 15 C 1.54313 * 112.18991 * 61.12001 * 14 13 11 16 16 C 1.50440 * 108.49239 * 281.46782 * 15 14 13 17 17 N 1.48003 * 112.74357 * 93.78130 * 16 15 14 18 18 C 1.47930 * 114.67561 * 317.92183 * 17 16 15 19 19 C 1.46501 * 120.00014 * 217.81975 * 9 7 2 20 20 C 1.54269 * 110.02825 * 61.41361 * 19 9 7 21 21 C 1.54895 * 104.19549 * 217.10709 * 20 19 9 22 22 C 1.54895 * 102.74799 * 37.94022 * 21 20 19 23 23 C 1.53875 * 110.03328 * 304.24951 * 19 9 7 24 24 H 0.97003 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46675 * 324.90199 * 10 9 7 26 26 H 1.08999 * 109.47202 * 204.90823 * 10 9 7 27 27 H 1.09001 * 108.93622 * 41.06474 * 13 11 10 28 28 H 1.09003 * 108.86309 * 282.41364 * 13 11 10 29 29 H 1.08995 * 108.93946 * 300.42169 * 14 13 11 30 30 H 1.09000 * 108.86889 * 181.77154 * 14 13 11 31 31 H 1.09000 * 109.63531 * 161.76335 * 15 14 13 32 32 H 1.09003 * 109.62978 * 41.16636 * 15 14 13 33 33 H 1.08996 * 108.81511 * 214.58762 * 16 15 14 34 34 H 1.09001 * 108.80751 * 332.97777 * 16 15 14 35 35 H 1.00903 * 110.99654 * 84.78152 * 17 16 15 36 36 H 1.08997 * 108.85430 * 197.34641 * 18 17 16 37 37 H 1.08991 * 108.72292 * 79.09894 * 18 17 16 38 38 H 1.08998 * 110.02196 * 182.85586 * 19 9 7 39 39 H 1.09004 * 110.48877 * 335.78062 * 20 19 9 40 40 H 1.08996 * 110.48748 * 98.43073 * 20 19 9 41 41 H 1.09001 * 110.75495 * 279.62998 * 21 20 19 42 42 H 1.09001 * 110.91815 * 156.33057 * 21 20 19 43 43 H 1.09002 * 110.48597 * 203.37791 * 22 21 20 44 44 H 1.09003 * 110.59413 * 80.79315 * 22 21 20 45 45 H 1.09004 * 110.03026 * 238.56961 * 23 19 9 46 46 H 1.09000 * 110.03240 * 359.94280 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3857 2.1111 -1.3941 5 1 1.5083 2.6177 0.8092 6 1 3.5993 1.4103 0.5850 7 6 2.0102 -1.2022 -0.0005 8 1 1.6354 -2.0418 -0.5670 9 7 3.1700 -1.3235 0.7174 10 6 3.2939 -0.6733 2.0243 11 6 2.7009 -1.5808 3.1039 12 1 1.6764 -1.8429 2.8398 13 6 2.7151 -0.8486 4.4621 14 6 1.8034 -1.4563 5.4251 15 6 2.1751 -2.9215 5.7352 16 6 1.6893 -3.7867 4.6044 17 7 2.7280 -4.0217 3.5767 18 6 3.5309 -2.8297 3.2262 19 6 4.2869 -2.1036 0.1785 20 6 4.7748 -1.4820 -1.1464 21 6 5.1447 -2.7028 -2.0251 22 6 4.0421 -3.7295 -1.6655 23 6 3.8210 -3.5325 -0.1515 24 1 -0.4850 0.8401 0.0004 25 1 2.7561 0.2748 2.0109 26 1 4.3465 -0.4907 2.2410 27 1 2.4246 0.1904 4.3068 28 1 3.7269 -0.8761 4.8667 29 1 0.7912 -1.4259 5.0219 30 1 1.8327 -0.8805 6.3501 31 1 1.6979 -3.2316 6.6648 32 1 3.2574 -3.0131 5.8275 33 1 1.3711 -4.7476 5.0086 34 1 0.8331 -3.3027 4.1345 35 1 3.3217 -4.7962 3.8332 36 1 4.0349 -3.0112 2.2769 37 1 4.2848 -2.6764 3.9982 38 1 5.1031 -2.1343 0.9003 39 1 3.9773 -0.9038 -1.6131 40 1 5.6506 -0.8563 -0.9746 41 1 6.1302 -3.0854 -1.7595 42 1 5.1038 -2.4469 -3.0839 43 1 4.3832 -4.7439 -1.8724 44 1 3.1256 -3.5164 -2.2158 45 1 4.4117 -4.2567 0.4095 46 1 2.7642 -3.6458 0.0902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:00 Heat of formation + Delta-G solvation = -7.116505 kcal Electronic energy + Delta-G solvation = -22491.446480 eV Core-core repulsion = 19607.985962 eV Total energy + Delta-G solvation = -2883.460518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41559 -39.03250 -36.19766 -34.24676 -33.89745 -32.47886 -29.34491 -28.87967 -27.93369 -26.00108 -25.35235 -23.50808 -21.51897 -21.29647 -20.82595 -20.13653 -18.29743 -17.23233 -16.87452 -16.77061 -16.33051 -15.92317 -15.68442 -15.08214 -14.73614 -14.66494 -14.33037 -14.04287 -13.98693 -13.84574 -13.24232 -13.16184 -12.81491 -12.70503 -12.35658 -12.21468 -12.07409 -11.97198 -11.75848 -11.70144 -11.67504 -11.45172 -11.37521 -11.29442 -11.27333 -11.15524 -10.86605 -10.37998 -9.03504 -8.53308 -8.19080 -5.33405 1.33817 1.43935 1.52073 2.51114 3.00380 3.38678 3.47990 3.79050 3.96289 4.01652 4.05916 4.12750 4.24501 4.30439 4.38843 4.49441 4.62716 4.69304 4.71252 4.79281 4.81618 4.87704 4.91848 4.97199 4.98591 4.99620 5.06709 5.17198 5.20376 5.24608 5.25372 5.30708 5.32733 5.37503 5.42897 5.54764 5.58055 5.69415 5.72395 5.77576 6.04167 6.33589 6.37122 6.76666 7.16105 7.83297 8.26914 9.02285 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.008943 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.073892 B = 3130.101761 C = 4238.151682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.002 4.002 3 Si 0.892 3.108 4 H -0.302 1.302 5 H -0.306 1.306 6 H -0.245 1.245 7 C -0.229 4.229 8 H 0.037 0.963 9 N -0.597 5.597 10 C 0.155 3.845 11 C -0.095 4.095 12 H 0.042 0.958 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.066 3.934 17 N -0.710 5.710 18 C 0.085 3.915 19 C 0.166 3.834 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.120 4.120 24 H 0.257 0.743 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.347 0.653 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.068 0.932 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.352 -6.863 8.881 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.199 4.199 3 Si 0.720 3.280 4 H -0.231 1.231 5 H -0.233 1.233 6 H -0.168 1.168 7 C -0.359 4.359 8 H 0.054 0.946 9 N -0.318 5.318 10 C 0.029 3.971 11 C -0.116 4.116 12 H 0.061 0.939 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.175 4.175 16 C -0.063 4.063 17 N -0.342 5.342 18 C -0.043 4.043 19 C 0.061 3.939 20 C -0.180 4.180 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.798 -6.660 8.402 15.216 hybrid contribution -0.106 1.437 0.263 1.465 sum 10.692 -5.223 8.664 14.720 Atomic orbital electron populations 1.70242 1.07866 1.26927 1.51800 1.25850 0.94915 0.99860 0.99315 0.86523 0.81769 0.83063 0.76632 1.23082 1.23336 1.16843 1.18196 0.97727 0.93995 1.25981 0.94573 1.44262 1.12647 1.59698 1.15165 1.21162 0.97730 0.93551 0.84636 1.21353 0.99834 0.95899 0.94516 0.93927 1.20612 1.00602 0.99020 0.94968 1.20516 0.98817 0.96938 0.98958 1.21893 1.01601 0.94776 0.99254 1.21650 0.94599 0.99681 0.90398 1.59872 1.19703 1.08580 1.46081 1.21533 0.93810 0.89015 0.99948 1.21321 0.88519 0.90549 0.93558 1.22836 0.99450 0.98080 0.97655 1.22371 0.98678 0.94897 0.98854 1.22248 0.98026 0.99259 0.95981 1.22397 1.00526 0.97134 0.95812 0.93368 0.96021 0.92359 0.93675 0.91030 0.94130 0.91013 0.89845 0.91390 0.90274 0.94421 0.83430 0.90763 0.95144 0.90892 0.93928 0.92103 0.89744 0.92004 0.90587 0.94531 0.91352 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.97 21.65 0.30 -57.69 16 2 C 0.00 -0.10 5.00 84.86 0.42 0.32 16 3 Si 0.89 45.47 26.36 68.60 1.81 47.28 16 4 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 5 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.24 -11.55 6.26 99.48 0.62 -10.92 16 7 C -0.23 -12.64 8.00 84.03 0.67 -11.97 16 8 H 0.04 2.26 7.13 -2.91 -0.02 2.24 16 9 N -0.60 -26.86 1.82 -674.00 -1.23 -28.09 16 10 C 0.16 6.45 3.80 86.38 0.33 6.77 16 11 C -0.09 -3.54 2.06 -11.18 -0.02 -3.57 16 12 H 0.04 2.02 7.09 -2.39 -0.02 2.01 16 13 C -0.11 -3.51 4.71 28.85 0.14 -3.38 16 14 C -0.11 -3.13 5.30 28.85 0.15 -2.98 16 15 C -0.14 -3.14 5.63 30.21 0.17 -2.97 16 16 C 0.07 1.80 6.02 85.26 0.51 2.31 16 17 N -0.71 -20.92 6.88 -517.64 -3.56 -24.48 16 18 C 0.08 2.66 5.52 85.28 0.47 3.13 16 19 C 0.17 6.17 2.25 45.72 0.10 6.28 16 20 C -0.14 -5.06 6.42 31.67 0.20 -4.86 16 21 C -0.11 -3.20 6.91 31.89 0.22 -2.98 16 22 C -0.12 -3.76 6.83 31.67 0.22 -3.54 16 23 C -0.12 -4.24 5.23 31.32 0.16 -4.08 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.02 1.01 4.46 -2.38 -0.01 1.00 16 26 H 0.06 2.11 7.85 -2.39 -0.02 2.09 16 27 H 0.04 1.49 7.93 -2.39 -0.02 1.47 16 28 H 0.07 1.89 7.51 -2.39 -0.02 1.87 16 29 H 0.04 1.29 7.52 -2.39 -0.02 1.27 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.48 7.08 -2.39 -0.02 1.46 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.30 6.58 -2.39 -0.02 1.28 16 35 H 0.35 8.23 8.92 -89.69 -0.80 7.43 16 36 H 0.07 2.46 3.94 -2.39 -0.01 2.45 16 37 H 0.03 0.82 6.58 -2.39 -0.02 0.81 16 38 H 0.07 2.38 7.00 -2.39 -0.02 2.36 16 39 H 0.04 1.86 7.18 -2.38 -0.02 1.84 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 46 H 0.04 1.77 6.77 -2.39 -0.02 1.76 16 Total: -1.00 -64.70 328.17 1.13 -63.57 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.06 Total: 20.92 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 3.75 Total: -21.50 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.49 Total: -110.26 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.81 Total: 47.28 kcal Total: -64.70 1.13 -63.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.454 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds