Wall clock time and date at job start Mon Mar 30 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47456 * 354.22355 * 3 2 1 5 5 H 1.48501 * 109.47019 * 114.22771 * 3 2 1 6 6 H 1.48500 * 109.46976 * 234.22403 * 3 2 1 7 7 C 1.38808 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 26.96083 * 7 2 1 9 9 N 1.36940 * 120.00209 * 206.95661 * 7 2 1 10 10 C 1.46500 * 119.99594 * 47.27272 * 9 7 2 11 11 C 1.53002 * 109.46988 * 96.20336 * 10 9 7 12 12 H 1.08995 * 109.54218 * 55.17600 * 11 10 9 13 13 C 1.50754 * 109.54177 * 175.43820 * 11 10 9 14 14 C 1.54170 * 112.61537 * 212.87613 * 13 11 10 15 15 C 1.53818 * 111.96675 * 318.48367 * 14 13 11 16 16 C 1.50813 * 111.61772 * 319.04497 * 15 14 13 17 17 N 1.47627 * 108.03786 * 95.06939 * 16 15 14 18 18 C 1.39780 * 114.76890 * 277.17094 * 17 16 15 19 19 C 1.46495 * 120.00010 * 227.27423 * 9 7 2 20 20 C 1.54270 * 110.03610 * 52.01830 * 19 9 7 21 21 C 1.54888 * 104.19616 * 217.10537 * 20 19 9 22 22 C 1.54888 * 102.75114 * 37.93932 * 21 20 19 23 23 C 1.53874 * 110.03367 * 294.84823 * 19 9 7 24 24 H 0.96997 * 120.00251 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47014 * 216.20225 * 10 9 7 26 26 H 1.09001 * 109.47236 * 336.20077 * 10 9 7 27 27 H 1.09003 * 108.85357 * 333.68698 * 13 11 10 28 28 H 1.09003 * 108.85513 * 92.06186 * 13 11 10 29 29 H 1.08998 * 108.98292 * 197.84419 * 14 13 11 30 30 H 1.08998 * 108.98216 * 79.12561 * 14 13 11 31 31 H 1.09002 * 109.04943 * 198.49581 * 15 14 13 32 32 H 1.08998 * 109.05066 * 79.60228 * 15 14 13 33 33 H 1.09004 * 109.75209 * 335.43541 * 16 15 14 34 34 H 1.09004 * 109.79118 * 214.73069 * 16 15 14 35 35 H 1.00896 * 111.00052 * 150.30336 * 17 16 15 36 36 H 1.08993 * 109.01983 * 301.68323 * 18 17 16 37 37 H 1.09000 * 108.95541 * 182.81618 * 18 17 16 38 38 H 1.09006 * 110.01215 * 173.45923 * 19 9 7 39 39 H 1.09005 * 110.48087 * 335.78475 * 20 19 9 40 40 H 1.08995 * 110.48570 * 98.41973 * 20 19 9 41 41 H 1.09002 * 110.74970 * 279.62599 * 21 20 19 42 42 H 1.08994 * 110.75454 * 156.25815 * 21 20 19 43 43 H 1.08998 * 110.48728 * 203.37936 * 22 21 20 44 44 H 1.08995 * 110.59796 * 80.78974 * 22 21 20 45 45 H 1.08993 * 110.03541 * 238.57004 * 23 19 9 46 46 H 1.09004 * 110.03170 * 359.95835 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2915 2.7429 -0.1409 5 1 2.9953 1.7591 1.2768 6 1 3.2065 1.6371 -1.1359 7 6 2.0102 -1.2021 -0.0005 8 1 1.5582 -2.0864 -0.4250 9 7 3.2680 -1.2669 0.5370 10 6 3.5344 -0.6757 1.8507 11 6 3.4436 -1.7604 2.9260 12 1 4.1187 -2.5789 2.6762 13 6 3.8266 -1.1785 4.2629 14 6 4.5319 -2.2021 5.1748 15 6 3.8677 -3.5878 5.1059 16 6 2.3635 -3.4822 5.0790 17 7 1.9279 -3.5182 3.6689 18 6 1.9952 -2.2907 3.0037 19 6 4.3471 -1.9272 -0.2016 20 6 4.4347 -1.3566 -1.6322 21 6 4.7876 -2.5834 -2.5095 22 6 3.9600 -3.7190 -1.8580 23 6 4.0454 -3.4293 -0.3451 24 1 -0.4850 -0.8400 -0.0004 25 1 4.5336 -0.2403 1.8573 26 1 2.7981 0.1015 2.0555 27 1 4.4945 -0.3325 4.1005 28 1 2.9260 -0.8226 4.7633 29 1 4.4977 -1.8433 6.2035 30 1 5.5736 -2.2926 4.8670 31 1 4.1680 -4.1700 5.9771 32 1 4.2047 -4.0995 4.2044 33 1 2.0519 -2.5433 5.5369 34 1 1.9250 -4.3198 5.6215 35 1 1.0085 -3.9252 3.5848 36 1 1.3790 -1.5649 3.5342 37 1 1.6073 -2.4142 1.9926 38 1 5.2955 -1.7848 0.3167 39 1 3.4759 -0.9349 -1.9339 40 1 5.2204 -0.6038 -1.6952 41 1 5.8539 -2.8027 -2.4557 42 1 4.4768 -2.4222 -3.5417 43 1 4.3993 -4.6901 -2.0858 44 1 2.9244 -3.6811 -2.1957 45 1 4.8475 -4.0158 0.1026 46 1 3.0963 -3.6670 0.1354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:03 Heat of formation + Delta-G solvation = -1.154409 kcal Electronic energy + Delta-G solvation = -22471.585785 eV Core-core repulsion = 19588.383803 eV Total energy + Delta-G solvation = -2883.201982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.88675 -37.55281 -34.59068 -33.12450 -32.10845 -30.83894 -27.84772 -27.19934 -26.06792 -24.55861 -23.72695 -21.69187 -20.03986 -19.89645 -18.88558 -18.77175 -17.10581 -16.06869 -15.26891 -15.00542 -14.54151 -14.40501 -14.12523 -13.80245 -13.63171 -13.20548 -12.79913 -12.75983 -12.48911 -11.92464 -11.82401 -11.47346 -11.13716 -10.89158 -10.69429 -10.68599 -10.42969 -10.33028 -10.28037 -10.20924 -10.11692 -9.90697 -9.83265 -9.75287 -9.73269 -9.34166 -9.09169 -8.22607 -7.79747 -6.81774 -6.06634 -3.43630 3.47595 3.56460 3.73887 4.63701 4.70481 5.02270 5.16719 5.19655 5.31868 5.35821 5.45700 5.48226 5.56686 5.65323 5.74854 5.78601 5.92750 6.05132 6.10230 6.13432 6.22933 6.29122 6.29436 6.30022 6.38457 6.44355 6.47904 6.54858 6.58306 6.59692 6.66040 6.71325 6.74636 6.76594 6.85602 7.00104 7.15870 7.24363 7.29918 7.34637 7.85638 8.06403 8.32614 8.68692 9.14255 9.70210 10.38327 11.09321 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.008462 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.114397 B = 3308.234876 C = 4123.800863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.009 3.991 3 Si 1.039 2.961 4 H -0.299 1.299 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.341 4.341 8 H 0.054 0.946 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.096 4.096 12 H 0.069 0.931 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.115 4.115 16 C 0.065 3.935 17 N -0.699 5.699 18 C 0.083 3.917 19 C 0.169 3.831 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.129 4.129 24 H 0.265 0.735 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.337 0.663 36 H -0.001 1.001 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -5.482 5.989 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.196 4.196 3 Si 0.870 3.130 4 H -0.226 1.226 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.470 4.470 8 H 0.072 0.928 9 N -0.314 5.314 10 C 0.020 3.980 11 C -0.117 4.117 12 H 0.087 0.913 13 C -0.156 4.156 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.063 4.063 17 N -0.330 5.330 18 C -0.047 4.047 19 C 0.062 3.938 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.017 0.983 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.567 -3.960 5.777 11.066 hybrid contribution -0.488 -1.186 0.432 1.353 sum 8.080 -5.146 6.208 11.415 Atomic orbital electron populations 1.70940 1.06842 1.29868 1.46595 1.26407 0.96204 1.01210 0.95757 0.84155 0.75092 0.76861 0.76890 1.22594 1.21308 1.21466 1.19665 0.91085 0.94930 1.41272 0.92814 1.44230 1.06672 1.66619 1.13866 1.21361 0.97870 0.93859 0.84956 1.21608 0.96622 0.99529 0.93944 0.91292 1.21523 0.99785 0.97826 0.96480 1.21879 0.99158 0.95362 0.98709 1.21393 0.95415 0.96794 1.01706 1.21609 0.95905 0.99534 0.89286 1.57377 1.32284 1.29056 1.14314 1.20895 0.95954 0.87702 1.00112 1.21066 0.90472 0.90941 0.91282 1.22779 1.01934 0.96131 0.96403 1.22406 0.98525 0.96624 0.98430 1.22236 0.99755 0.96764 0.96666 1.22564 1.01244 0.98135 0.94879 0.92497 0.95203 0.92137 0.92790 0.93114 0.93234 0.92756 0.93051 0.90752 0.94807 0.92208 0.84443 0.98277 0.87640 0.93723 0.89488 0.93755 0.92866 0.92853 0.93568 0.92101 0.94080 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.58 13.71 55.49 0.76 -25.82 16 2 C 0.01 0.25 5.07 -17.43 -0.09 0.16 16 3 Si 1.04 25.38 27.02 -169.99 -4.59 20.78 16 4 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 5 H -0.29 -6.56 5.90 56.52 0.33 -6.23 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.34 -8.69 5.63 -15.06 -0.08 -8.77 16 8 H 0.05 1.53 7.71 -52.49 -0.40 1.12 16 9 N -0.59 -13.15 1.56 -164.39 -0.26 -13.41 16 10 C 0.15 3.06 3.52 -4.04 -0.01 3.04 16 11 C -0.10 -1.77 2.11 -90.99 -0.19 -1.96 16 12 H 0.07 1.33 7.12 -51.93 -0.37 0.96 16 13 C -0.12 -1.89 4.87 -27.25 -0.13 -2.03 16 14 C -0.11 -1.54 5.91 -25.69 -0.15 -1.69 16 15 C -0.11 -1.55 5.41 -27.40 -0.15 -1.70 16 16 C 0.07 0.92 6.22 -4.52 -0.03 0.89 16 17 N -0.70 -11.52 6.07 -118.54 -0.72 -12.23 16 18 C 0.08 1.62 5.34 -6.74 -0.04 1.58 16 19 C 0.17 3.37 3.43 -66.81 -0.23 3.14 16 20 C -0.13 -2.60 6.39 -25.07 -0.16 -2.76 16 21 C -0.12 -2.01 6.91 -24.74 -0.17 -2.19 16 22 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 23 C -0.13 -2.40 6.29 -25.61 -0.16 -2.56 16 24 H 0.26 7.75 8.73 -40.82 -0.36 7.39 16 25 H 0.03 0.59 7.85 -51.93 -0.41 0.18 16 26 H 0.06 1.41 4.94 -51.93 -0.26 1.15 16 27 H 0.05 0.84 7.61 -51.93 -0.40 0.45 16 28 H 0.05 0.84 6.58 -51.93 -0.34 0.50 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.13 7.27 -51.93 -0.38 0.75 16 33 H 0.03 0.50 6.66 -51.93 -0.35 0.15 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.34 5.17 8.85 -39.29 -0.35 4.83 16 36 H 0.00 -0.02 7.55 -51.93 -0.39 -0.41 16 37 H 0.11 2.43 5.73 -51.93 -0.30 2.13 16 38 H 0.04 0.85 7.88 -51.93 -0.41 0.44 16 39 H 0.09 1.97 6.80 -51.93 -0.35 1.62 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.53 7.34 -51.93 -0.38 1.15 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -26.67 332.43 -10.09 -36.76 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.53 Total: 5.91 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.77 Total: -17.01 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.21 Total: -51.46 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.59 Total: 20.78 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.67 -10.09 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.608 kcal (2) G-P(sol) polarization free energy of solvation -26.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds