Wall clock time and date at job start Mon Mar 30 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47456 * 354.22355 * 3 2 1 5 5 H 1.48501 * 109.47019 * 114.22771 * 3 2 1 6 6 H 1.48500 * 109.46976 * 234.22403 * 3 2 1 7 7 C 1.38808 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 26.96083 * 7 2 1 9 9 N 1.36940 * 120.00209 * 206.95661 * 7 2 1 10 10 C 1.46500 * 119.99594 * 47.27272 * 9 7 2 11 11 C 1.53002 * 109.46988 * 96.20336 * 10 9 7 12 12 H 1.08995 * 109.54218 * 55.17600 * 11 10 9 13 13 C 1.50754 * 109.54177 * 175.43820 * 11 10 9 14 14 C 1.54170 * 112.61537 * 212.87613 * 13 11 10 15 15 C 1.53818 * 111.96675 * 318.48367 * 14 13 11 16 16 C 1.50813 * 111.61772 * 319.04497 * 15 14 13 17 17 N 1.47627 * 108.03786 * 95.06939 * 16 15 14 18 18 C 1.39780 * 114.76890 * 277.17094 * 17 16 15 19 19 C 1.46495 * 120.00010 * 227.27423 * 9 7 2 20 20 C 1.54270 * 110.03610 * 52.01830 * 19 9 7 21 21 C 1.54888 * 104.19616 * 217.10537 * 20 19 9 22 22 C 1.54888 * 102.75114 * 37.93932 * 21 20 19 23 23 C 1.53874 * 110.03367 * 294.84823 * 19 9 7 24 24 H 0.96997 * 120.00251 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47014 * 216.20225 * 10 9 7 26 26 H 1.09001 * 109.47236 * 336.20077 * 10 9 7 27 27 H 1.09003 * 108.85357 * 333.68698 * 13 11 10 28 28 H 1.09003 * 108.85513 * 92.06186 * 13 11 10 29 29 H 1.08998 * 108.98292 * 197.84419 * 14 13 11 30 30 H 1.08998 * 108.98216 * 79.12561 * 14 13 11 31 31 H 1.09002 * 109.04943 * 198.49581 * 15 14 13 32 32 H 1.08998 * 109.05066 * 79.60228 * 15 14 13 33 33 H 1.09004 * 109.75209 * 335.43541 * 16 15 14 34 34 H 1.09004 * 109.79118 * 214.73069 * 16 15 14 35 35 H 1.00896 * 111.00052 * 150.30336 * 17 16 15 36 36 H 1.08993 * 109.01983 * 301.68323 * 18 17 16 37 37 H 1.09000 * 108.95541 * 182.81618 * 18 17 16 38 38 H 1.09006 * 110.01215 * 173.45923 * 19 9 7 39 39 H 1.09005 * 110.48087 * 335.78475 * 20 19 9 40 40 H 1.08995 * 110.48570 * 98.41973 * 20 19 9 41 41 H 1.09002 * 110.74970 * 279.62599 * 21 20 19 42 42 H 1.08994 * 110.75454 * 156.25815 * 21 20 19 43 43 H 1.08998 * 110.48728 * 203.37936 * 22 21 20 44 44 H 1.08995 * 110.59796 * 80.78974 * 22 21 20 45 45 H 1.08993 * 110.03541 * 238.57004 * 23 19 9 46 46 H 1.09004 * 110.03170 * 359.95835 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2915 2.7429 -0.1409 5 1 2.9953 1.7591 1.2768 6 1 3.2065 1.6371 -1.1359 7 6 2.0102 -1.2021 -0.0005 8 1 1.5582 -2.0864 -0.4250 9 7 3.2680 -1.2669 0.5370 10 6 3.5344 -0.6757 1.8507 11 6 3.4436 -1.7604 2.9260 12 1 4.1187 -2.5789 2.6762 13 6 3.8266 -1.1785 4.2629 14 6 4.5319 -2.2021 5.1748 15 6 3.8677 -3.5878 5.1059 16 6 2.3635 -3.4822 5.0790 17 7 1.9279 -3.5182 3.6689 18 6 1.9952 -2.2907 3.0037 19 6 4.3471 -1.9272 -0.2016 20 6 4.4347 -1.3566 -1.6322 21 6 4.7876 -2.5834 -2.5095 22 6 3.9600 -3.7190 -1.8580 23 6 4.0454 -3.4293 -0.3451 24 1 -0.4850 -0.8400 -0.0004 25 1 4.5336 -0.2403 1.8573 26 1 2.7981 0.1015 2.0555 27 1 4.4945 -0.3325 4.1005 28 1 2.9260 -0.8226 4.7633 29 1 4.4977 -1.8433 6.2035 30 1 5.5736 -2.2926 4.8670 31 1 4.1680 -4.1700 5.9771 32 1 4.2047 -4.0995 4.2044 33 1 2.0519 -2.5433 5.5369 34 1 1.9250 -4.3198 5.6215 35 1 1.0085 -3.9252 3.5848 36 1 1.3790 -1.5649 3.5342 37 1 1.6073 -2.4142 1.9926 38 1 5.2955 -1.7848 0.3167 39 1 3.4759 -0.9349 -1.9339 40 1 5.2204 -0.6038 -1.6952 41 1 5.8539 -2.8027 -2.4557 42 1 4.4768 -2.4222 -3.5417 43 1 4.3993 -4.6901 -2.0858 44 1 2.9244 -3.6811 -2.1957 45 1 4.8475 -4.0158 0.1026 46 1 3.0963 -3.6670 0.1354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:03 Heat of formation + Delta-G solvation = -16.122428 kcal Electronic energy + Delta-G solvation = -22472.234847 eV Core-core repulsion = 19588.383803 eV Total energy + Delta-G solvation = -2883.851044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34892 -39.06806 -36.23138 -34.50411 -33.85802 -32.49183 -29.35443 -28.67574 -27.75082 -25.91376 -25.30280 -23.43688 -21.45595 -21.31710 -20.67719 -20.06749 -18.97360 -17.52948 -16.83580 -16.66364 -15.87824 -15.75996 -15.73601 -15.36735 -15.19638 -14.73086 -14.49084 -14.33478 -13.99250 -13.52909 -13.26552 -12.89241 -12.69605 -12.47140 -12.29270 -12.08901 -11.96428 -11.81198 -11.76021 -11.69419 -11.57198 -11.46669 -11.35855 -11.28889 -11.19444 -11.01616 -10.92448 -10.30568 -9.21094 -8.86453 -8.10105 -5.54093 1.49028 1.56452 1.75677 2.61142 3.14106 3.39213 3.49116 3.92953 3.97853 3.98568 4.03439 4.15281 4.26744 4.28365 4.35437 4.47209 4.68892 4.69821 4.74795 4.76001 4.81153 4.90004 4.91644 4.93835 4.94920 4.99895 5.03140 5.04289 5.18179 5.21043 5.25100 5.29948 5.32760 5.37641 5.49762 5.52864 5.59416 5.66550 5.69834 5.73158 6.10505 6.50799 6.56281 6.61934 7.12342 7.77402 8.33948 8.92837 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.008462 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.114397 B = 3308.234876 C = 4123.800863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.041 4.041 3 Si 1.074 2.926 4 H -0.313 1.313 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.298 4.298 8 H 0.013 0.987 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.082 4.082 12 H 0.067 0.933 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.113 4.113 16 C 0.065 3.935 17 N -0.703 5.703 18 C 0.102 3.898 19 C 0.162 3.838 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.122 4.122 24 H 0.249 0.751 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.340 0.660 36 H -0.024 1.024 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 -6.235 7.267 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.239 4.239 3 Si 0.901 3.099 4 H -0.241 1.241 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.428 4.428 8 H 0.030 0.970 9 N -0.322 5.322 10 C 0.016 3.984 11 C -0.103 4.103 12 H 0.085 0.915 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.063 4.063 17 N -0.334 5.334 18 C -0.029 4.029 19 C 0.056 3.944 20 C -0.175 4.175 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.161 4.161 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.159 0.841 36 H -0.006 1.006 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.147 -4.740 7.070 14.832 hybrid contribution -1.578 -1.086 0.049 1.916 sum 10.568 -5.825 7.120 14.011 Atomic orbital electron populations 1.71041 1.08022 1.28798 1.50842 1.27270 0.96091 1.04079 0.96479 0.83671 0.74353 0.73462 0.78367 1.24108 1.18658 1.20224 1.19237 0.92058 0.92872 1.38682 0.96967 1.44283 1.06175 1.66834 1.14888 1.21430 0.98032 0.94078 0.84891 1.21401 0.95542 0.98525 0.94868 0.91457 1.21480 0.99904 0.98902 0.95206 1.21858 0.99253 0.94459 0.99065 1.21383 0.94456 0.97060 1.02193 1.21740 0.96834 1.00333 0.87403 1.57358 1.32665 1.27189 1.16223 1.20542 0.96298 0.88433 0.97662 1.21284 0.90267 0.91261 0.91552 1.22735 1.00337 0.97758 0.96645 1.22376 1.00081 0.94326 0.98090 1.22214 0.98793 0.98768 0.95459 1.22448 1.00071 0.97635 0.95950 0.94191 0.93073 0.94677 0.91904 0.94103 0.91257 0.91597 0.90234 0.92381 0.95349 0.89732 0.84068 1.00616 0.92188 0.91559 0.93524 0.92288 0.89810 0.92030 0.90670 0.94736 0.91792 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.71 21.65 0.30 -58.62 16 2 C -0.04 -2.35 5.07 84.86 0.43 -1.92 16 3 Si 1.07 52.28 27.02 68.60 1.85 54.14 16 4 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 5 H -0.26 -11.52 5.90 99.48 0.59 -10.93 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.30 -15.97 5.63 84.03 0.47 -15.49 16 8 H 0.01 0.78 7.71 -2.91 -0.02 0.75 16 9 N -0.60 -26.82 1.56 -674.01 -1.05 -27.87 16 10 C 0.14 5.83 3.52 86.38 0.30 6.13 16 11 C -0.08 -2.97 2.11 -11.04 -0.02 -3.00 16 12 H 0.07 2.48 7.12 -2.39 -0.02 2.47 16 13 C -0.12 -3.50 4.87 30.26 0.15 -3.36 16 14 C -0.11 -2.57 5.91 31.27 0.18 -2.38 16 15 C -0.11 -2.68 5.41 30.16 0.16 -2.52 16 16 C 0.06 1.70 6.22 85.45 0.53 2.23 16 17 N -0.70 -23.16 6.07 -528.96 -3.21 -26.37 16 18 C 0.10 4.07 5.34 88.07 0.47 4.54 16 19 C 0.16 6.23 3.43 45.72 0.16 6.38 16 20 C -0.14 -5.08 6.39 31.67 0.20 -4.88 16 21 C -0.11 -3.36 6.91 31.88 0.22 -3.14 16 22 C -0.11 -3.76 6.83 31.67 0.22 -3.54 16 23 C -0.12 -4.41 6.29 31.32 0.20 -4.21 16 24 H 0.25 15.72 8.73 -92.71 -0.81 14.91 16 25 H 0.05 1.90 7.85 -2.39 -0.02 1.88 16 26 H 0.03 1.63 4.94 -2.39 -0.01 1.62 16 27 H 0.06 1.78 7.61 -2.39 -0.02 1.76 16 28 H 0.04 1.30 6.58 -2.39 -0.02 1.29 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.60 7.27 -2.39 -0.02 1.58 16 33 H 0.03 0.79 6.66 -2.39 -0.02 0.77 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.34 10.67 8.85 -89.70 -0.79 9.88 16 36 H -0.02 -1.06 7.55 -2.39 -0.02 -1.07 16 37 H 0.06 2.94 5.73 -2.39 -0.01 2.93 16 38 H 0.07 2.29 7.88 -2.38 -0.02 2.27 16 39 H 0.05 2.13 6.80 -2.38 -0.02 2.11 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.55 7.34 -2.38 -0.02 1.54 16 Total: -1.00 -61.82 332.43 1.55 -60.27 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.02 Total: 23.62 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.67 Total: -25.16 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.96 Total: -112.86 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 1.85 Total: 54.14 kcal Total: -61.82 1.55 -60.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.145 kcal (2) G-P(sol) polarization free energy of solvation -61.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds