Wall clock time and date at job start Mon Mar 30 2020 00:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47195 * 2 1 4 4 N 1.46503 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.36738 * 127.13804 * 270.21467 * 4 3 2 6 6 C 1.50698 * 126.34841 * 359.95882 * 5 4 3 7 7 C 1.52997 * 109.47071 * 90.00244 * 6 5 4 8 8 N 1.30297 * 107.30505 * 179.83383 * 5 4 3 9 9 N 1.28526 * 110.04994 * 0.44334 * 8 5 4 10 10 C 1.31209 * 109.86456 * 359.71525 * 9 8 5 11 11 N 1.38583 * 126.47761 * 180.02562 * 10 9 8 12 12 C 1.46900 * 111.00111 * 292.91266 * 11 10 9 13 13 C 1.46895 * 110.99592 * 56.86135 * 11 10 9 14 14 H 1.08995 * 109.47536 * 300.00274 * 13 11 10 15 15 C 1.53001 * 109.47228 * 60.00309 * 13 11 10 16 16 C 1.50700 * 109.47252 * 180.02562 * 13 11 10 17 17 H 1.08010 * 119.99673 * 0.02562 * 16 13 11 18 18 C 1.37877 * 120.00457 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00145 * 180.02562 * 18 16 13 20 20 Si 1.86802 * 119.99685 * 359.97438 * 18 16 13 21 21 H 1.48504 * 109.46616 * 90.00618 * 20 18 16 22 22 H 1.48500 * 109.46875 * 210.00075 * 20 18 16 23 23 H 1.48495 * 109.47065 * 330.00328 * 20 18 16 24 24 H 1.09005 * 109.47457 * 59.99267 * 1 2 3 25 25 H 1.08999 * 109.47632 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46855 * 299.99289 * 1 2 3 27 27 H 1.08996 * 109.47002 * 120.01063 * 2 1 3 28 28 H 1.09004 * 109.46438 * 240.00387 * 2 1 3 29 29 H 1.08996 * 109.48013 * 300.00444 * 3 2 1 30 30 H 1.09004 * 109.47111 * 60.00799 * 3 2 1 31 31 H 1.08998 * 109.47842 * 210.00292 * 6 5 4 32 32 H 1.09005 * 109.47301 * 330.00293 * 6 5 4 33 33 H 1.09005 * 109.47018 * 59.99875 * 7 6 5 34 34 H 1.08994 * 109.47768 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47531 * 300.00541 * 7 6 5 36 36 H 1.08997 * 109.47508 * 66.34229 * 12 11 10 37 37 H 1.08998 * 109.47406 * 186.34724 * 12 11 10 38 38 H 1.09003 * 109.46809 * 306.34410 * 12 11 10 39 39 H 1.09003 * 109.47274 * 179.97438 * 15 13 11 40 40 H 1.08997 * 109.47046 * 300.00024 * 15 13 11 41 41 H 1.09002 * 109.47199 * 59.99776 * 15 13 11 42 42 H 0.97003 * 120.00254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3310 1.4381 1.0891 6 6 3.9032 1.4334 2.5341 7 6 3.7577 -0.0107 3.0181 8 7 5.5565 1.4362 0.6465 9 7 5.5608 1.4483 -0.6387 10 6 4.3283 1.4525 -1.0887 11 7 3.9366 1.4645 -2.4180 12 6 4.3001 2.7335 -3.0625 13 6 4.5068 0.3226 -3.1450 14 1 5.5948 0.3702 -3.1008 15 6 4.0270 -0.9812 -2.5040 16 6 4.0605 0.3694 -4.5837 17 1 3.4178 1.1681 -4.9239 18 6 4.4725 -0.6071 -5.4656 19 7 4.0834 -0.5658 -6.7211 20 14 5.5846 -1.9879 -4.8772 21 1 4.7542 -3.1215 -4.3969 22 1 6.4434 -2.4440 -5.9995 23 1 6.4400 -1.4958 -3.7676 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5140 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 4.6537 1.9447 3.1369 32 1 2.9470 1.9474 2.6317 33 1 4.7139 -0.5247 2.9205 34 1 3.4479 -0.0143 4.0631 35 1 3.0072 -0.5221 2.4153 36 1 5.3857 2.8160 -3.1161 37 1 3.8835 2.7622 -4.0693 38 1 3.9010 3.5641 -2.4803 39 1 4.4498 -1.8286 -3.0438 40 1 4.3502 -1.0149 -1.4636 41 1 2.9390 -1.0290 -2.5482 42 1 4.3735 -1.2526 -7.3417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001614787874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:14 Heat of formation + Delta-G solvation = 82.535277 kcal Electronic energy + Delta-G solvation = -21729.417770 eV Core-core repulsion = 18746.304502 eV Total energy + Delta-G solvation = -2983.113268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.61575 -37.29472 -36.09772 -33.87623 -32.81240 -32.23504 -30.35411 -28.68935 -26.74068 -25.54475 -24.52188 -23.95184 -22.20267 -21.73912 -20.09855 -19.49549 -17.07282 -16.57303 -16.03198 -15.48955 -15.12522 -14.91896 -14.47121 -14.18742 -13.81437 -13.47398 -13.32907 -12.75932 -12.53019 -12.43693 -12.36292 -12.22109 -11.81772 -11.77578 -11.53689 -11.45607 -11.18856 -10.98525 -10.82626 -10.71797 -10.65095 -10.22513 -10.09621 -9.75240 -9.59560 -9.24716 -8.65173 -8.51407 -7.90474 -6.15185 -4.15634 2.09714 2.61958 3.23381 3.24283 3.36567 3.40836 4.34856 4.38538 4.41670 4.63532 4.79035 4.81318 5.06572 5.13905 5.17281 5.21285 5.32581 5.47681 5.55786 5.62067 5.63823 5.65641 5.83490 5.93770 6.00607 6.02857 6.17612 6.20294 6.23970 6.30238 6.32233 6.38791 6.52821 6.65779 6.79457 7.00258 7.14201 7.43002 7.66185 7.97320 8.50705 8.87390 9.16767 9.45439 10.96663 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.006614 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.612881 B = 4232.659685 C = 4507.612390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.116 3.884 4 N -0.467 5.467 5 C 0.160 3.840 6 C -0.028 4.028 7 C -0.149 4.149 8 N -0.292 5.292 9 N -0.321 5.321 10 C 0.374 3.626 11 N -0.461 5.461 12 C 0.050 3.950 13 C 0.196 3.804 14 H 0.021 0.979 15 C -0.144 4.144 16 C -0.512 4.512 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.894 5.894 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.264 1.264 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 3.004 17.014 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.007 4.007 4 N -0.160 5.160 5 C -0.108 4.108 6 C -0.068 4.068 7 C -0.207 4.207 8 N -0.133 5.133 9 N -0.164 5.164 10 C 0.018 3.982 11 N -0.188 5.188 12 C -0.097 4.097 13 C 0.090 3.910 14 H 0.038 0.962 15 C -0.201 4.201 16 C -0.550 4.550 17 H 0.104 0.896 18 C -0.125 4.125 19 N -0.531 5.531 20 Si 0.708 3.292 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.189 1.189 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.954 2.883 16.782 18.039 hybrid contribution -0.104 -0.867 0.120 0.882 sum -6.058 2.015 16.902 18.068 Atomic orbital electron populations 1.21659 0.94345 1.02340 1.02008 1.22003 0.96758 0.95686 1.03840 1.21853 0.75574 0.98975 1.04337 1.46423 1.08349 1.55105 1.06166 1.24637 0.87547 1.07081 0.91522 1.19868 1.02012 0.98867 0.86042 1.21810 1.02802 0.95214 1.00907 1.73940 1.17381 1.18170 1.03772 1.74670 1.17736 1.21210 1.02834 1.22817 0.85046 1.00730 0.89607 1.59004 1.59197 1.06266 0.94304 1.22251 0.99722 0.87431 1.00327 1.19805 0.93817 0.84112 0.93238 0.96182 1.22192 1.01532 0.98933 0.97451 1.20857 1.31820 1.12433 0.89895 0.89556 1.24816 0.95489 0.97486 0.94712 1.69852 1.44946 1.34891 1.03434 0.86984 0.81245 0.82859 0.78087 1.20517 1.22097 1.18911 0.91941 0.92111 0.92800 0.91670 0.89882 0.87989 0.89683 0.88672 0.90453 0.91810 0.91614 0.92533 0.94541 0.88592 0.93598 0.93344 0.95850 0.92221 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.14 -1.70 6.26 -26.74 -0.17 -1.87 16 3 C 0.12 1.41 6.02 -4.04 -0.02 1.39 16 4 N -0.47 -7.54 2.81 -114.09 -0.32 -7.87 16 5 C 0.16 2.51 7.32 -154.01 -1.13 1.38 16 6 C -0.03 -0.29 6.31 -27.89 -0.18 -0.47 16 7 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 8 N -0.29 -5.78 12.18 32.99 0.40 -5.38 16 9 N -0.32 -7.11 12.07 30.31 0.37 -6.75 16 10 C 0.37 7.52 5.05 -318.88 -1.61 5.91 16 11 N -0.46 -9.75 4.66 -176.09 -0.82 -10.57 16 12 C 0.05 0.98 9.14 60.06 0.55 1.53 16 13 C 0.20 4.77 1.57 -68.87 -0.11 4.66 16 14 H 0.02 0.55 7.11 -51.93 -0.37 0.18 16 15 C -0.14 -3.28 8.22 37.16 0.31 -2.97 16 16 C -0.51 -13.88 8.54 -34.44 -0.29 -14.18 16 17 H 0.09 2.47 6.64 -52.48 -0.35 2.12 16 18 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 19 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 20 Si 0.88 22.08 24.37 -169.99 -4.14 17.94 16 21 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.26 -6.68 6.53 56.52 0.37 -6.31 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.73 6.21 -51.93 -0.32 0.40 16 28 H 0.08 1.24 6.50 -51.93 -0.34 0.91 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.08 0.77 7.26 -51.93 -0.38 0.39 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.62 7.27 -51.93 -0.38 0.24 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.55 6.22 -51.93 -0.32 0.23 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.94 6.32 -51.93 -0.33 1.61 16 38 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 40 H 0.02 0.51 7.22 -51.93 -0.38 0.13 16 41 H 0.06 1.29 6.88 -51.93 -0.36 0.94 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -32.27 326.68 -7.50 -39.77 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.67 Total: -1.80 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.01 Total: -4.52 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.40 Total: -56.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.27 -7.50 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614787874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.304 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds