Wall clock time and date at job start Mon Mar 30 2020 00:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47195 * 2 1 4 4 N 1.46503 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.36738 * 127.13804 * 270.21467 * 4 3 2 6 6 C 1.50698 * 126.34841 * 359.95882 * 5 4 3 7 7 C 1.52997 * 109.47071 * 90.00244 * 6 5 4 8 8 N 1.30297 * 107.30505 * 179.83383 * 5 4 3 9 9 N 1.28526 * 110.04994 * 0.44334 * 8 5 4 10 10 C 1.31209 * 109.86456 * 359.71525 * 9 8 5 11 11 N 1.38583 * 126.47761 * 180.02562 * 10 9 8 12 12 C 1.46900 * 111.00111 * 292.91266 * 11 10 9 13 13 C 1.46895 * 110.99592 * 56.86135 * 11 10 9 14 14 H 1.08995 * 109.47536 * 300.00274 * 13 11 10 15 15 C 1.53001 * 109.47228 * 60.00309 * 13 11 10 16 16 C 1.50700 * 109.47252 * 180.02562 * 13 11 10 17 17 H 1.08010 * 119.99673 * 0.02562 * 16 13 11 18 18 C 1.37877 * 120.00457 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00145 * 180.02562 * 18 16 13 20 20 Si 1.86802 * 119.99685 * 359.97438 * 18 16 13 21 21 H 1.48504 * 109.46616 * 90.00618 * 20 18 16 22 22 H 1.48500 * 109.46875 * 210.00075 * 20 18 16 23 23 H 1.48495 * 109.47065 * 330.00328 * 20 18 16 24 24 H 1.09005 * 109.47457 * 59.99267 * 1 2 3 25 25 H 1.08999 * 109.47632 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46855 * 299.99289 * 1 2 3 27 27 H 1.08996 * 109.47002 * 120.01063 * 2 1 3 28 28 H 1.09004 * 109.46438 * 240.00387 * 2 1 3 29 29 H 1.08996 * 109.48013 * 300.00444 * 3 2 1 30 30 H 1.09004 * 109.47111 * 60.00799 * 3 2 1 31 31 H 1.08998 * 109.47842 * 210.00292 * 6 5 4 32 32 H 1.09005 * 109.47301 * 330.00293 * 6 5 4 33 33 H 1.09005 * 109.47018 * 59.99875 * 7 6 5 34 34 H 1.08994 * 109.47768 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47531 * 300.00541 * 7 6 5 36 36 H 1.08997 * 109.47508 * 66.34229 * 12 11 10 37 37 H 1.08998 * 109.47406 * 186.34724 * 12 11 10 38 38 H 1.09003 * 109.46809 * 306.34410 * 12 11 10 39 39 H 1.09003 * 109.47274 * 179.97438 * 15 13 11 40 40 H 1.08997 * 109.47046 * 300.00024 * 15 13 11 41 41 H 1.09002 * 109.47199 * 59.99776 * 15 13 11 42 42 H 0.97003 * 120.00254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3310 1.4381 1.0891 6 6 3.9032 1.4334 2.5341 7 6 3.7577 -0.0107 3.0181 8 7 5.5565 1.4362 0.6465 9 7 5.5608 1.4483 -0.6387 10 6 4.3283 1.4525 -1.0887 11 7 3.9366 1.4645 -2.4180 12 6 4.3001 2.7335 -3.0625 13 6 4.5068 0.3226 -3.1450 14 1 5.5948 0.3702 -3.1008 15 6 4.0270 -0.9812 -2.5040 16 6 4.0605 0.3694 -4.5837 17 1 3.4178 1.1681 -4.9239 18 6 4.4725 -0.6071 -5.4656 19 7 4.0834 -0.5658 -6.7211 20 14 5.5846 -1.9879 -4.8772 21 1 4.7542 -3.1215 -4.3969 22 1 6.4434 -2.4440 -5.9995 23 1 6.4400 -1.4958 -3.7676 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5140 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 4.6537 1.9447 3.1369 32 1 2.9470 1.9474 2.6317 33 1 4.7139 -0.5247 2.9205 34 1 3.4479 -0.0143 4.0631 35 1 3.0072 -0.5221 2.4153 36 1 5.3857 2.8160 -3.1161 37 1 3.8835 2.7622 -4.0693 38 1 3.9010 3.5641 -2.4803 39 1 4.4498 -1.8286 -3.0438 40 1 4.3502 -1.0149 -1.4636 41 1 2.9390 -1.0290 -2.5482 42 1 4.3735 -1.2526 -7.3417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001614787874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:14 Heat of formation + Delta-G solvation = 62.094620 kcal Electronic energy + Delta-G solvation = -21730.304144 eV Core-core repulsion = 18746.304502 eV Total energy + Delta-G solvation = -2983.999642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.00483 -39.02558 -37.19772 -35.13437 -34.49103 -33.42565 -32.24513 -30.06372 -27.85901 -27.31748 -26.25139 -24.95224 -23.63964 -22.98026 -21.25283 -21.12591 -18.97965 -17.98100 -17.64796 -16.89393 -16.70349 -16.13730 -15.73035 -15.51335 -15.20185 -14.96438 -14.50692 -14.43016 -14.16179 -13.79328 -13.37621 -13.31396 -13.25498 -12.99660 -12.79530 -12.64535 -12.52426 -12.39045 -12.34631 -12.29689 -12.08261 -11.63168 -11.55904 -11.49298 -11.27901 -10.96983 -10.81324 -9.97854 -9.64437 -8.35549 -6.38699 0.75090 1.20937 1.30692 1.34637 1.38938 1.80581 2.24155 2.86178 2.99899 3.38418 3.67250 3.89481 3.95347 4.01026 4.22904 4.33289 4.34157 4.37501 4.40256 4.42366 4.50019 4.52481 4.62772 4.68551 4.77012 4.80616 4.88987 4.99000 4.99684 5.03065 5.06138 5.18078 5.21415 5.31422 5.32285 5.42870 5.47521 5.70738 5.83302 6.16738 6.56303 6.65843 7.25196 7.74915 8.79383 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.006614 C = 0.006210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.612881 B = 4232.659685 C = 4507.612390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.108 3.892 4 N -0.460 5.460 5 C 0.185 3.815 6 C -0.029 4.029 7 C -0.145 4.145 8 N -0.335 5.335 9 N -0.362 5.362 10 C 0.354 3.646 11 N -0.456 5.456 12 C 0.055 3.945 13 C 0.205 3.795 14 H -0.009 1.009 15 C -0.130 4.130 16 C -0.507 4.507 17 H 0.063 0.937 18 C 0.033 3.967 19 N -0.932 5.932 20 Si 0.928 3.072 21 H -0.262 1.262 22 H -0.290 1.290 23 H -0.271 1.271 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 2.922 20.185 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C -0.013 4.013 4 N -0.153 5.153 5 C -0.084 4.084 6 C -0.068 4.068 7 C -0.203 4.203 8 N -0.175 5.175 9 N -0.206 5.206 10 C -0.004 4.004 11 N -0.182 5.182 12 C -0.093 4.093 13 C 0.097 3.903 14 H 0.009 0.991 15 C -0.187 4.187 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.166 4.166 19 N -0.571 5.571 20 Si 0.756 3.244 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.196 1.196 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.647 2.803 19.973 21.569 hybrid contribution 0.363 -0.747 -0.759 1.124 sum -7.284 2.057 19.214 20.651 Atomic orbital electron populations 1.21628 0.92174 1.02874 1.03060 1.21954 0.98525 0.94939 1.02417 1.22246 0.73107 0.99767 1.06185 1.46629 1.09710 1.53998 1.04941 1.25719 0.86374 1.02933 0.93375 1.20249 1.04117 1.00222 0.82223 1.21794 1.01641 0.93951 1.02928 1.73862 1.19849 1.20871 1.02886 1.74545 1.19358 1.22293 1.04359 1.22607 0.85586 1.02594 0.89568 1.58900 1.58601 1.05588 0.95096 1.22211 0.98722 0.88069 1.00277 1.19500 0.92087 0.86359 0.92331 0.99129 1.22009 1.01932 0.97495 0.97309 1.20999 1.30633 1.11355 0.91501 0.91843 1.25436 0.96769 0.99664 0.94770 1.69950 1.46603 1.36077 1.04500 0.86170 0.79823 0.80930 0.77446 1.18769 1.21698 1.19598 0.92630 0.91900 0.89987 0.90711 0.93673 0.88750 0.85240 0.87500 0.86781 0.94022 0.88257 0.92749 0.96131 0.89765 0.90704 0.94178 0.95361 0.91314 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 71.98 0.71 -1.40 16 2 C -0.14 -2.93 6.26 30.59 0.19 -2.74 16 3 C 0.11 2.29 6.02 86.38 0.52 2.81 16 4 N -0.46 -13.96 2.81 -514.86 -1.45 -15.41 16 5 C 0.18 5.38 7.32 137.64 1.01 6.39 16 6 C -0.03 -0.47 6.31 29.85 0.19 -0.28 16 7 C -0.14 -2.15 9.89 71.98 0.71 -1.44 16 8 N -0.33 -13.08 12.18 -49.54 -0.60 -13.68 16 9 N -0.36 -16.20 12.07 -58.01 -0.70 -16.90 16 10 C 0.35 14.16 5.05 260.11 1.31 15.47 16 11 N -0.46 -19.51 4.66 -711.02 -3.31 -22.82 16 12 C 0.05 2.19 9.14 127.69 1.17 3.36 16 13 C 0.20 10.13 1.57 44.17 0.07 10.20 16 14 H -0.01 -0.49 7.11 -2.39 -0.02 -0.51 16 15 C -0.13 -5.94 8.22 71.98 0.59 -5.34 16 16 C -0.51 -28.22 8.54 25.60 0.22 -28.00 16 17 H 0.06 3.77 6.64 -2.91 -0.02 3.75 16 18 C 0.03 1.90 5.45 84.65 0.46 2.36 16 19 N -0.93 -56.40 13.96 21.45 0.30 -56.10 16 20 Si 0.93 46.03 24.37 68.60 1.67 47.70 16 21 H -0.26 -12.22 6.87 99.48 0.68 -11.54 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -13.63 6.53 99.48 0.65 -12.98 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.41 6.21 -2.39 -0.01 1.40 16 28 H 0.04 1.30 6.50 -2.38 -0.02 1.28 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.13 1.63 7.26 -2.38 -0.02 1.61 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 1.11 7.27 -2.38 -0.02 1.09 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.84 6.22 -2.39 -0.01 0.82 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 3.54 6.32 -2.39 -0.02 3.52 16 38 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 39 H 0.04 1.88 3.27 -2.39 -0.01 1.87 16 40 H 0.03 1.23 7.22 -2.39 -0.02 1.21 16 41 H 0.07 2.97 6.88 -2.39 -0.02 2.96 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.81 326.68 3.99 -68.83 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.92 Total: 6.99 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 7.15 Total: 1.39 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -5.76 Total: -124.90 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.70 kcal Total: -72.81 3.99 -68.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614787874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.922 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds