Wall clock time and date at job start Mon Mar 30 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53121 * 109.52353 * 2 1 4 4 C 1.53031 * 109.27955 * 182.43686 * 3 2 1 5 5 N 1.46853 * 109.52161 * 59.18338 * 4 3 2 6 6 C 1.46905 * 110.99903 * 174.15885 * 5 4 3 7 7 C 1.53005 * 109.46583 * 170.00007 * 6 5 4 8 8 C 1.53005 * 109.46602 * 176.73265 * 7 6 5 9 9 H 1.09000 * 109.87496 * 306.42627 * 8 7 6 10 10 C 1.54329 * 109.87935 * 185.41128 * 8 7 6 11 11 C 1.55159 * 102.93990 * 218.39077 * 10 8 7 12 12 C 1.54905 * 101.58190 * 35.50699 * 11 10 8 13 13 N 1.47017 * 109.88029 * 67.60698 * 8 7 6 14 14 C 1.36943 * 125.65093 * 298.33485 * 13 8 7 15 15 H 1.08003 * 119.99518 * 342.64425 * 14 13 8 16 16 C 1.38810 * 120.00271 * 162.65183 * 14 13 8 17 17 N 1.31615 * 120.00224 * 159.90826 * 16 14 13 18 18 Si 1.86807 * 119.99847 * 339.90393 * 16 14 13 19 19 H 1.48497 * 109.46885 * 84.76197 * 18 16 14 20 20 H 1.48495 * 109.46853 * 204.76388 * 18 16 14 21 21 H 1.48507 * 109.46864 * 324.75944 * 18 16 14 22 22 C 1.46846 * 111.19560 * 298.25709 * 5 4 3 23 23 C 1.53034 * 109.52646 * 61.74100 * 22 5 4 24 24 H 1.09000 * 109.47193 * 60.00102 * 1 2 3 25 25 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46919 * 299.99888 * 1 2 3 27 27 H 1.09004 * 109.57762 * 120.16029 * 2 1 3 28 28 H 1.09002 * 109.49545 * 62.50125 * 3 2 1 29 29 H 1.08994 * 109.53917 * 302.40414 * 3 2 1 30 30 H 1.08999 * 109.46941 * 299.17093 * 4 3 2 31 31 H 1.08995 * 109.46467 * 179.19483 * 4 3 2 32 32 H 1.08997 * 109.46898 * 289.99562 * 6 5 4 33 33 H 1.08991 * 109.47003 * 50.00161 * 6 5 4 34 34 H 1.08996 * 109.47448 * 296.73076 * 7 6 5 35 35 H 1.08998 * 109.47072 * 56.73947 * 7 6 5 36 36 H 1.09000 * 110.72053 * 336.75725 * 10 8 7 37 37 H 1.09002 * 110.71547 * 99.85289 * 10 8 7 38 38 H 1.09001 * 111.00001 * 153.58238 * 11 10 8 39 39 H 1.09000 * 111.00198 * 277.38977 * 11 10 8 40 40 H 1.08992 * 110.36786 * 81.82869 * 12 11 10 41 41 H 1.09009 * 110.36439 * 204.04480 * 12 11 10 42 42 H 0.97001 * 120.00377 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.46195 * 181.75894 * 22 5 4 44 44 H 1.08998 * 109.46213 * 301.72165 * 22 5 4 45 45 H 1.08994 * 109.50562 * 180.87783 * 23 22 5 46 46 H 1.09010 * 109.53496 * 60.78063 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 -0.0614 5 7 4.0103 0.7430 -1.2787 6 6 5.4671 0.8380 -1.4419 7 6 5.9158 -0.0952 -2.5684 8 6 7.4209 0.0639 -2.7932 9 1 7.6624 1.1143 -2.9554 10 6 7.8601 -0.7704 -4.0150 11 6 9.2383 -1.3315 -3.5754 12 6 9.0085 -1.5703 -2.0622 13 7 8.1572 -0.4476 -1.6280 14 6 8.0676 0.0385 -0.3509 15 1 7.6481 1.0179 -0.1742 16 6 8.5160 -0.7274 0.7164 17 7 8.8041 -0.1518 1.8644 18 14 8.7104 -2.5753 0.5233 19 1 10.0382 -2.8738 -0.0709 20 1 8.6061 -3.2256 1.8542 21 1 7.6414 -3.0951 -0.3668 22 6 3.5708 -0.6581 -1.2789 23 6 2.0417 -0.7146 -1.2538 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8953 -0.5160 0.8880 28 1 1.7161 1.9446 0.9114 29 1 1.6448 1.9707 -0.8672 30 1 3.9675 0.9221 0.8135 31 1 3.9378 2.4633 -0.0760 32 1 5.7388 1.8640 -1.6901 33 1 5.9566 0.5471 -0.5125 34 1 5.6965 -1.1271 -2.2946 35 1 5.3829 0.1589 -3.4846 36 1 7.1556 -1.5808 -4.2020 37 1 7.9616 -0.1382 -4.8972 38 1 9.4612 -2.2666 -4.0891 39 1 10.0288 -0.5994 -3.7405 40 1 8.4965 -2.5189 -1.9013 41 1 9.9584 -1.5571 -1.5276 42 1 9.1171 -0.6870 2.6103 43 1 3.9378 -1.1537 -2.1777 44 1 3.9675 -1.1633 -0.3983 45 1 1.7162 -1.7547 -1.2382 46 1 1.6441 -0.2221 -2.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648026339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:19 Heat of formation + Delta-G solvation = 13.153037 kcal Electronic energy + Delta-G solvation = -21810.861010 eV Core-core repulsion = 18928.279446 eV Total energy + Delta-G solvation = -2882.581565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.06862 -37.91479 -34.73338 -32.59097 -31.35410 -30.50319 -29.88735 -28.09194 -25.67725 -24.31505 -23.20999 -22.23268 -21.21528 -20.25470 -19.39181 -19.04371 -16.89219 -15.79747 -15.36297 -14.98508 -14.61505 -14.46908 -14.12292 -13.90240 -13.46030 -13.20035 -12.90062 -12.70764 -12.44695 -12.19132 -12.14396 -11.93243 -11.56421 -11.32171 -11.25283 -11.07783 -10.94712 -10.83144 -10.57442 -10.45177 -10.33720 -10.24940 -9.98152 -9.91306 -9.72496 -9.65751 -9.29405 -8.69088 -7.71291 -6.99802 -5.91894 -3.20988 3.34675 3.47779 3.49256 4.37568 4.55628 4.88940 4.92455 4.98432 4.99511 5.27067 5.35616 5.37418 5.49925 5.55678 5.60663 5.63865 5.70217 5.77012 5.79951 5.85827 5.89711 5.98564 6.04176 6.11761 6.15032 6.15306 6.20249 6.23842 6.28336 6.32960 6.34525 6.37964 6.47602 6.54923 6.58383 6.64341 6.76634 6.83493 7.01373 7.06943 7.60890 7.64970 7.76751 8.32849 8.85629 9.71670 10.23059 11.23899 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.006108 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.499761 B = 4583.206239 C = 5238.441210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.043 3.957 7 C -0.120 4.120 8 C 0.161 3.839 9 H 0.043 0.957 10 C -0.126 4.126 11 C -0.131 4.131 12 C 0.106 3.894 13 N -0.604 5.604 14 C -0.232 4.232 15 H 0.097 0.903 16 C 0.018 3.982 17 N -0.913 5.913 18 Si 0.885 3.115 19 H -0.287 1.287 20 H -0.306 1.306 21 H -0.277 1.277 22 C 0.051 3.949 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.262 0.738 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 -0.435 -8.195 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.146 4.146 4 C -0.074 4.074 5 N -0.266 5.266 6 C -0.083 4.083 7 C -0.160 4.160 8 C 0.054 3.946 9 H 0.060 0.940 10 C -0.164 4.164 11 C -0.170 4.170 12 C -0.019 4.019 13 N -0.330 5.330 14 C -0.359 4.359 15 H 0.114 0.886 16 C -0.180 4.180 17 N -0.557 5.557 18 Si 0.716 3.284 19 H -0.214 1.214 20 H -0.234 1.234 21 H -0.203 1.203 22 C -0.077 4.077 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.523 -0.171 -8.324 14.216 hybrid contribution 0.505 -1.549 0.798 1.814 sum -11.018 -1.720 -7.527 13.454 Atomic orbital electron populations 1.21803 0.95544 1.01284 1.01459 1.21196 0.95100 0.96643 0.98539 1.21618 0.95375 0.96084 1.01484 1.22023 0.94816 0.99103 0.91414 1.62088 1.14389 1.13398 1.36698 1.22529 0.85229 0.99303 1.01280 1.22110 0.97114 0.99322 0.97432 1.20990 0.90236 0.96389 0.87020 0.93960 1.22589 0.96951 0.99383 0.97444 1.22710 0.97154 1.00135 0.96986 1.21993 0.95206 0.91681 0.93067 1.44887 1.46246 1.36895 1.04996 1.18641 1.37644 0.99847 0.79720 0.88561 1.24950 1.00180 0.97660 0.95247 1.69811 1.47602 1.34930 1.03376 0.86999 0.78066 0.88164 0.75157 1.21406 1.23445 1.20272 1.22121 0.94535 0.89955 1.01134 1.21645 0.95568 0.99561 0.97919 0.92795 0.93030 0.92986 0.91626 0.92103 0.91496 0.94733 0.91129 0.92062 0.90026 0.92372 0.92913 0.91845 0.91742 0.92004 0.91409 0.95724 0.92504 0.92853 0.90455 0.95029 0.92243 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 37.16 0.34 -1.11 16 2 C -0.10 -1.19 2.79 -90.50 -0.25 -1.45 16 3 C -0.11 -1.39 5.38 -26.65 -0.14 -1.53 16 4 C 0.05 0.87 5.42 -3.83 -0.02 0.85 16 5 N -0.54 -9.13 4.81 -234.67 -1.13 -10.26 16 6 C 0.04 0.82 4.55 -3.82 -0.02 0.80 16 7 C -0.12 -2.18 3.83 -26.73 -0.10 -2.28 16 8 C 0.16 3.11 3.23 -66.95 -0.22 2.89 16 9 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 10 C -0.13 -2.02 6.48 -24.89 -0.16 -2.18 16 11 C -0.13 -2.23 7.08 -24.58 -0.17 -2.40 16 12 C 0.11 2.30 4.68 -2.53 -0.01 2.29 16 13 N -0.60 -14.21 2.96 -162.57 -0.48 -14.69 16 14 C -0.23 -6.30 8.31 -15.06 -0.13 -6.43 16 15 H 0.10 2.77 6.69 -52.48 -0.35 2.42 16 16 C 0.02 0.50 5.46 -17.43 -0.10 0.41 16 17 N -0.91 -27.93 13.97 55.49 0.78 -27.15 16 18 Si 0.88 22.81 24.24 -169.99 -4.12 18.69 16 19 H -0.29 -7.18 6.45 56.52 0.36 -6.82 16 20 H -0.31 -8.07 7.11 56.52 0.40 -7.66 16 21 H -0.28 -7.04 6.39 56.52 0.36 -6.68 16 22 C 0.05 0.81 4.85 -3.84 -0.02 0.79 16 23 C -0.11 -1.42 5.38 -26.65 -0.14 -1.57 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.88 4.92 -51.93 -0.26 1.63 16 34 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.03 0.57 5.46 -51.93 -0.28 0.29 16 41 H 0.06 1.33 6.33 -51.92 -0.33 1.01 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.08 1.23 5.89 -51.93 -0.31 0.92 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -29.41 332.85 -9.74 -39.16 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.67 Total: 0.14 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.14 Total: -10.91 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.83 Total: -52.10 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.12 Total: 18.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.41 -9.74 -39.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648026339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds