Wall clock time and date at job start Mon Mar 30 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53121 * 109.52353 * 2 1 4 4 C 1.53031 * 109.27955 * 182.43686 * 3 2 1 5 5 N 1.46853 * 109.52161 * 59.18338 * 4 3 2 6 6 C 1.46905 * 110.99903 * 174.15885 * 5 4 3 7 7 C 1.53005 * 109.46583 * 170.00007 * 6 5 4 8 8 C 1.53005 * 109.46602 * 176.73265 * 7 6 5 9 9 H 1.09000 * 109.87496 * 306.42627 * 8 7 6 10 10 C 1.54329 * 109.87935 * 185.41128 * 8 7 6 11 11 C 1.55159 * 102.93990 * 218.39077 * 10 8 7 12 12 C 1.54905 * 101.58190 * 35.50699 * 11 10 8 13 13 N 1.47017 * 109.88029 * 67.60698 * 8 7 6 14 14 C 1.36943 * 125.65093 * 298.33485 * 13 8 7 15 15 H 1.08003 * 119.99518 * 342.64425 * 14 13 8 16 16 C 1.38810 * 120.00271 * 162.65183 * 14 13 8 17 17 N 1.31615 * 120.00224 * 159.90826 * 16 14 13 18 18 Si 1.86807 * 119.99847 * 339.90393 * 16 14 13 19 19 H 1.48497 * 109.46885 * 84.76197 * 18 16 14 20 20 H 1.48495 * 109.46853 * 204.76388 * 18 16 14 21 21 H 1.48507 * 109.46864 * 324.75944 * 18 16 14 22 22 C 1.46846 * 111.19560 * 298.25709 * 5 4 3 23 23 C 1.53034 * 109.52646 * 61.74100 * 22 5 4 24 24 H 1.09000 * 109.47193 * 60.00102 * 1 2 3 25 25 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46919 * 299.99888 * 1 2 3 27 27 H 1.09004 * 109.57762 * 120.16029 * 2 1 3 28 28 H 1.09002 * 109.49545 * 62.50125 * 3 2 1 29 29 H 1.08994 * 109.53917 * 302.40414 * 3 2 1 30 30 H 1.08999 * 109.46941 * 299.17093 * 4 3 2 31 31 H 1.08995 * 109.46467 * 179.19483 * 4 3 2 32 32 H 1.08997 * 109.46898 * 289.99562 * 6 5 4 33 33 H 1.08991 * 109.47003 * 50.00161 * 6 5 4 34 34 H 1.08996 * 109.47448 * 296.73076 * 7 6 5 35 35 H 1.08998 * 109.47072 * 56.73947 * 7 6 5 36 36 H 1.09000 * 110.72053 * 336.75725 * 10 8 7 37 37 H 1.09002 * 110.71547 * 99.85289 * 10 8 7 38 38 H 1.09001 * 111.00001 * 153.58238 * 11 10 8 39 39 H 1.09000 * 111.00198 * 277.38977 * 11 10 8 40 40 H 1.08992 * 110.36786 * 81.82869 * 12 11 10 41 41 H 1.09009 * 110.36439 * 204.04480 * 12 11 10 42 42 H 0.97001 * 120.00377 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.46195 * 181.75894 * 22 5 4 44 44 H 1.08998 * 109.46213 * 301.72165 * 22 5 4 45 45 H 1.08994 * 109.50562 * 180.87783 * 23 22 5 46 46 H 1.09010 * 109.53496 * 60.78063 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 -0.0614 5 7 4.0103 0.7430 -1.2787 6 6 5.4671 0.8380 -1.4419 7 6 5.9158 -0.0952 -2.5684 8 6 7.4209 0.0639 -2.7932 9 1 7.6624 1.1143 -2.9554 10 6 7.8601 -0.7704 -4.0150 11 6 9.2383 -1.3315 -3.5754 12 6 9.0085 -1.5703 -2.0622 13 7 8.1572 -0.4476 -1.6280 14 6 8.0676 0.0385 -0.3509 15 1 7.6481 1.0179 -0.1742 16 6 8.5160 -0.7274 0.7164 17 7 8.8041 -0.1518 1.8644 18 14 8.7104 -2.5753 0.5233 19 1 10.0382 -2.8738 -0.0709 20 1 8.6061 -3.2256 1.8542 21 1 7.6414 -3.0951 -0.3668 22 6 3.5708 -0.6581 -1.2789 23 6 2.0417 -0.7146 -1.2538 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8953 -0.5160 0.8880 28 1 1.7161 1.9446 0.9114 29 1 1.6448 1.9707 -0.8672 30 1 3.9675 0.9221 0.8135 31 1 3.9378 2.4633 -0.0760 32 1 5.7388 1.8640 -1.6901 33 1 5.9566 0.5471 -0.5125 34 1 5.6965 -1.1271 -2.2946 35 1 5.3829 0.1589 -3.4846 36 1 7.1556 -1.5808 -4.2020 37 1 7.9616 -0.1382 -4.8972 38 1 9.4612 -2.2666 -4.0891 39 1 10.0288 -0.5994 -3.7405 40 1 8.4965 -2.5189 -1.9013 41 1 9.9584 -1.5571 -1.5276 42 1 9.1171 -0.6870 2.6103 43 1 3.9378 -1.1537 -2.1777 44 1 3.9675 -1.1633 -0.3983 45 1 1.7162 -1.7547 -1.2382 46 1 1.6441 -0.2221 -2.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648026339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:19 Heat of formation + Delta-G solvation = -5.411264 kcal Electronic energy + Delta-G solvation = -21811.666019 eV Core-core repulsion = 18928.279446 eV Total energy + Delta-G solvation = -2883.386573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43249 -39.42286 -35.98954 -34.63345 -32.73620 -31.82853 -31.67161 -29.32476 -27.06719 -26.19957 -24.50858 -23.58214 -22.71245 -21.60612 -20.74587 -20.51825 -18.88284 -17.42973 -17.06487 -16.53391 -16.01790 -15.71834 -15.37102 -15.12449 -15.04783 -14.89585 -14.52782 -14.28167 -13.79745 -13.65373 -13.33932 -13.13393 -13.07952 -12.87604 -12.71894 -12.64734 -12.39619 -12.20159 -12.15151 -11.94091 -11.69574 -11.60240 -11.48703 -11.35021 -11.23698 -11.10614 -10.96746 -10.76584 -9.24509 -8.98147 -8.14233 -5.37937 1.25124 1.33175 1.40579 2.40310 2.98362 3.10836 3.33314 3.80569 3.85747 3.92525 3.94231 3.96304 4.17901 4.25911 4.32323 4.40288 4.42655 4.52477 4.56643 4.63314 4.70013 4.75884 4.79090 4.81718 4.83863 4.88476 4.93491 4.99224 5.01764 5.09942 5.14267 5.15461 5.17323 5.27286 5.28835 5.31286 5.35654 5.41330 5.54421 5.57483 5.74359 6.13242 6.17629 6.22967 6.81131 7.59222 8.16411 9.05579 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.006108 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.499761 B = 4583.206239 C = 5238.441210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.099 4.099 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.051 3.949 7 C -0.108 4.108 8 C 0.149 3.851 9 H 0.038 0.962 10 C -0.114 4.114 11 C -0.119 4.119 12 C 0.094 3.906 13 N -0.621 5.621 14 C -0.201 4.201 15 H 0.068 0.932 16 C -0.046 4.046 17 N -0.963 5.963 18 Si 0.941 3.059 19 H -0.274 1.274 20 H -0.317 1.317 21 H -0.271 1.271 22 C 0.049 3.951 23 C -0.102 4.102 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.004 0.996 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.034 0.966 42 H 0.257 0.743 43 H 0.081 0.919 44 H -0.001 1.001 45 H 0.074 0.926 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 -1.255 -11.478 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.137 4.137 4 C -0.077 4.077 5 N -0.256 5.256 6 C -0.076 4.076 7 C -0.147 4.147 8 C 0.044 3.956 9 H 0.056 0.944 10 C -0.151 4.151 11 C -0.157 4.157 12 C -0.031 4.031 13 N -0.347 5.347 14 C -0.330 4.330 15 H 0.086 0.914 16 C -0.239 4.239 17 N -0.612 5.612 18 Si 0.772 3.228 19 H -0.200 1.200 20 H -0.247 1.247 21 H -0.197 1.197 22 C -0.079 4.079 23 C -0.139 4.139 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.022 0.978 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.018 0.982 45 H 0.093 0.907 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.223 -1.003 -11.670 17.665 hybrid contribution 1.012 -1.180 1.776 2.360 sum -12.211 -2.184 -9.895 15.868 Atomic orbital electron populations 1.21733 0.93087 1.02185 1.02348 1.21214 0.97087 0.95803 0.97593 1.21587 0.92453 0.96980 1.02697 1.22112 0.97368 0.98381 0.89845 1.62186 1.12530 1.14091 1.36839 1.22300 0.86569 0.99252 0.99516 1.21982 0.96644 0.98135 0.97975 1.21282 0.90506 0.96821 0.87040 0.94387 1.22592 0.96331 0.99653 0.96555 1.22682 0.98001 1.02107 0.92959 1.22120 0.93606 0.90656 0.96673 1.45070 1.47654 1.37362 1.04637 1.18562 1.34279 0.98481 0.81662 0.91415 1.25512 1.01852 1.01253 0.95318 1.69935 1.50863 1.36037 1.04374 0.86065 0.78605 0.83666 0.74429 1.20043 1.24668 1.19711 1.22206 0.96985 0.88894 0.99789 1.21621 0.92787 1.00867 0.98664 0.91780 0.92168 0.92239 0.93277 0.90725 0.90351 0.97811 0.91312 0.92454 0.94922 0.93534 0.89887 0.90397 0.88293 0.88686 0.90771 0.96264 0.94752 0.93388 0.90028 0.98246 0.90700 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.69 16 2 C -0.10 -2.29 2.79 -10.71 -0.03 -2.32 16 3 C -0.10 -2.45 5.38 30.65 0.16 -2.28 16 4 C 0.05 1.67 5.42 86.32 0.47 2.14 16 5 N -0.53 -18.03 4.81 -896.37 -4.31 -22.34 16 6 C 0.05 2.00 4.55 86.30 0.39 2.39 16 7 C -0.11 -3.78 3.83 30.60 0.12 -3.67 16 8 C 0.15 5.53 3.23 45.35 0.15 5.68 16 9 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 10 C -0.11 -3.15 6.48 31.79 0.21 -2.94 16 11 C -0.12 -3.59 7.08 31.99 0.23 -3.37 16 12 C 0.09 3.97 4.68 86.85 0.41 4.38 16 13 N -0.62 -29.24 2.96 -668.24 -1.98 -31.22 16 14 C -0.20 -11.40 8.31 84.03 0.70 -10.70 16 15 H 0.07 4.16 6.69 -2.91 -0.02 4.15 16 16 C -0.05 -2.78 5.46 84.86 0.46 -2.32 16 17 N -0.96 -62.19 13.97 21.65 0.30 -61.89 16 18 Si 0.94 48.72 24.24 68.60 1.66 50.38 16 19 H -0.27 -13.43 6.45 99.48 0.64 -12.79 16 20 H -0.32 -16.84 7.11 99.48 0.71 -16.13 16 21 H -0.27 -13.57 6.39 99.48 0.64 -12.93 16 22 C 0.05 1.56 4.85 86.32 0.42 1.98 16 23 C -0.10 -2.45 5.38 30.65 0.16 -2.29 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 1.61 4.92 -2.39 -0.01 1.60 16 34 H 0.05 1.75 6.43 -2.39 -0.02 1.73 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 37 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.86 5.46 -2.39 -0.01 0.84 16 41 H 0.03 1.59 6.33 -2.38 -0.02 1.58 16 42 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 43 H 0.08 2.49 5.89 -2.39 -0.01 2.48 16 44 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -67.62 332.85 0.96 -66.66 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.78 Total: 13.40 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 4.51 Total: -15.00 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -5.99 Total: -115.45 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.66 Total: 50.38 kcal Total: -67.62 0.96 -66.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648026339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.253 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds