Wall clock time and date at job start Mon Mar 30 2020 00:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53122 * 109.52346 * 2 1 4 4 C 1.53037 * 109.27602 * 182.44006 * 3 2 1 5 5 N 1.46850 * 109.52318 * 59.18447 * 4 3 2 6 6 C 1.46900 * 111.00184 * 174.15947 * 5 4 3 7 7 C 1.52998 * 109.47270 * 169.99926 * 6 5 4 8 8 C 1.52998 * 109.46949 * 174.37925 * 7 6 5 9 9 H 1.08992 * 109.87730 * 305.41078 * 8 7 6 10 10 C 1.54331 * 109.88153 * 66.58983 * 8 7 6 11 11 C 1.55158 * 102.94209 * 141.60638 * 10 8 7 12 12 C 1.54909 * 101.58355 * 324.49945 * 11 10 8 13 13 N 1.47027 * 109.87950 * 184.39438 * 8 7 6 14 14 C 1.36929 * 125.64740 * 61.68304 * 13 8 7 15 15 H 1.08005 * 120.00188 * 12.60824 * 14 13 8 16 16 C 1.38811 * 119.99953 * 192.61412 * 14 13 8 17 17 N 1.31616 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00102 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47460 * 89.99888 * 18 16 14 20 20 H 1.48505 * 109.47449 * 209.99510 * 18 16 14 21 21 H 1.48504 * 109.47118 * 329.99870 * 18 16 14 22 22 C 1.46851 * 111.19504 * 298.25432 * 5 4 3 23 23 C 1.53038 * 109.52523 * 61.74377 * 22 5 4 24 24 H 1.09002 * 109.47685 * 59.99878 * 1 2 3 25 25 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46951 * 299.99378 * 1 2 3 27 27 H 1.09004 * 109.57849 * 120.16239 * 2 1 3 28 28 H 1.08997 * 109.50202 * 62.50475 * 3 2 1 29 29 H 1.08997 * 109.50090 * 302.38102 * 3 2 1 30 30 H 1.08996 * 109.46668 * 299.16624 * 4 3 2 31 31 H 1.09005 * 109.45726 * 179.19332 * 4 3 2 32 32 H 1.09000 * 109.47342 * 49.99532 * 6 5 4 33 33 H 1.09004 * 109.46527 * 289.99958 * 6 5 4 34 34 H 1.08998 * 109.47274 * 54.38264 * 7 6 5 35 35 H 1.08994 * 109.46844 * 294.38197 * 7 6 5 36 36 H 1.09001 * 110.71749 * 259.96982 * 10 8 7 37 37 H 1.08998 * 110.72176 * 23.24487 * 10 8 7 38 38 H 1.08999 * 111.00641 * 206.42303 * 11 10 8 39 39 H 1.09001 * 111.03845 * 82.58492 * 11 10 8 40 40 H 1.08999 * 110.36784 * 278.17098 * 12 11 10 41 41 H 1.08999 * 110.36903 * 155.84976 * 12 11 10 42 42 H 0.97006 * 120.00381 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.46092 * 181.75922 * 22 5 4 44 44 H 1.09002 * 109.46038 * 301.72646 * 22 5 4 45 45 H 1.08992 * 109.50052 * 180.87757 * 23 22 5 46 46 H 1.09002 * 109.53346 * 60.77801 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4370 -0.0615 5 7 4.0102 0.7430 -1.2788 6 6 5.4670 0.8378 -1.4421 7 6 5.9157 -0.0952 -2.5686 8 6 7.4091 0.1061 -2.8331 9 1 7.6118 1.1585 -3.0313 10 6 8.2269 -0.3686 -1.6133 11 6 9.4649 -1.0397 -2.2648 12 6 8.8420 -1.6785 -3.5312 13 7 7.8275 -0.7089 -3.9831 14 6 7.3541 -0.5869 -5.2621 15 1 6.7689 0.2769 -5.5412 16 6 7.6260 -1.5735 -6.1999 17 7 8.3395 -2.6260 -5.8598 18 14 6.9795 -1.4075 -7.9445 19 1 7.9784 -0.6896 -8.7765 20 1 6.7398 -2.7578 -8.5142 21 1 5.7064 -0.6432 -7.9300 22 6 3.5707 -0.6582 -1.2790 23 6 2.0416 -0.7147 -1.2539 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8952 -0.5160 0.8880 28 1 1.7162 1.9447 0.9114 29 1 1.6447 1.9700 -0.8677 30 1 3.9674 0.9220 0.8134 31 1 3.9377 2.4633 -0.0761 32 1 5.9565 0.5470 -0.5127 33 1 5.7387 1.8639 -1.6902 34 1 5.3526 0.1312 -3.4740 35 1 5.7345 -1.1298 -2.2772 36 1 8.5272 0.4788 -0.9970 37 1 7.6602 -1.0917 -1.0269 38 1 9.8861 -1.8020 -1.6095 39 1 10.2173 -0.2975 -2.5314 40 1 8.3729 -2.6308 -3.2841 41 1 9.6028 -1.8174 -4.2993 42 1 8.5292 -3.3157 -6.5151 43 1 3.9377 -1.1538 -2.1779 44 1 3.9674 -1.1634 -0.3983 45 1 1.7161 -1.7548 -1.2383 46 1 1.6440 -0.2221 -2.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648026340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:21 Heat of formation + Delta-G solvation = 5.293141 kcal Electronic energy + Delta-G solvation = -21273.784192 eV Core-core repulsion = 18390.861797 eV Total energy + Delta-G solvation = -2882.922395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.24505 -37.59268 -34.93730 -32.54637 -31.27644 -30.59602 -29.26309 -27.94484 -25.45166 -24.36205 -23.41768 -22.37097 -20.91887 -20.09467 -19.61371 -18.96516 -16.77174 -15.76095 -15.20073 -14.89319 -14.57909 -14.48192 -14.17030 -13.92606 -13.75705 -13.56635 -12.61970 -12.49341 -12.30665 -12.13868 -11.93256 -11.86430 -11.67864 -11.48750 -11.15986 -11.02095 -10.81249 -10.74046 -10.65370 -10.52345 -10.27230 -10.06931 -9.98510 -9.93566 -9.70596 -9.56031 -9.54666 -8.51931 -8.07165 -6.72054 -5.67223 -3.01898 3.43354 3.49025 3.50819 4.08945 4.54794 4.71633 4.77150 4.79898 5.19314 5.32442 5.40615 5.44245 5.44869 5.52039 5.56707 5.60631 5.62806 5.66291 5.70527 5.80059 5.84155 5.84541 5.96016 5.98556 6.06005 6.06246 6.11209 6.17002 6.21496 6.32579 6.39283 6.43123 6.48613 6.63059 6.73213 6.77554 7.04319 7.21862 7.34320 7.37613 7.62307 7.68511 7.87196 8.36260 9.27634 9.89188 10.58040 11.44590 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.004820 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.978496 B = 5807.643186 C = 6735.694294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.059 3.941 7 C -0.125 4.125 8 C 0.163 3.837 9 H 0.031 0.969 10 C -0.124 4.124 11 C -0.150 4.150 12 C 0.172 3.828 13 N -0.596 5.596 14 C -0.222 4.222 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.050 3.950 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.251 0.749 43 H 0.088 0.912 44 H 0.027 0.973 45 H 0.063 0.937 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 5.455 13.366 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.148 4.148 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.069 4.069 7 C -0.165 4.165 8 C 0.055 3.945 9 H 0.049 0.951 10 C -0.162 4.162 11 C -0.189 4.189 12 C 0.047 3.953 13 N -0.320 5.320 14 C -0.351 4.351 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.568 5.568 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.078 4.078 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.969 5.556 12.748 17.111 hybrid contribution 0.006 -0.425 -0.184 0.463 sum -9.963 5.131 12.564 16.836 Atomic orbital electron populations 1.21809 0.95358 1.01504 1.01567 1.21192 0.95360 0.96346 0.98422 1.21635 0.94969 0.96420 1.01764 1.22058 0.95512 0.98888 0.90832 1.62002 1.13419 1.14134 1.36635 1.22190 0.85747 1.00797 0.98127 1.22224 0.98757 0.97973 0.97501 1.20899 0.91149 0.94771 0.87706 0.95088 1.22588 0.97342 0.99259 0.97023 1.23015 0.96795 0.99503 0.99558 1.21437 0.91577 0.90618 0.91652 1.44548 1.44766 1.39165 1.03554 1.18995 1.28158 1.03083 0.84839 0.90726 1.24848 1.00780 0.96139 0.98557 1.69940 1.42846 1.10674 1.33335 0.86175 0.78622 0.76733 0.84614 1.21674 1.21742 1.20622 1.22195 0.95046 0.89150 1.01425 1.21662 0.95266 0.99975 0.98042 0.92597 0.92860 0.93021 0.91841 0.92039 0.91128 0.95439 0.91093 0.95439 0.91208 0.91077 0.92480 0.92691 0.92324 0.92647 0.92464 0.96133 0.90850 0.93837 0.89365 0.95495 0.91855 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.20 37.15 0.34 -0.93 16 2 C -0.09 -0.98 2.79 -90.50 -0.25 -1.23 16 3 C -0.11 -1.15 5.38 -26.65 -0.14 -1.29 16 4 C 0.06 0.66 5.42 -3.83 -0.02 0.64 16 5 N -0.54 -7.77 4.81 -234.66 -1.13 -8.89 16 6 C 0.06 0.92 5.03 -3.82 -0.02 0.90 16 7 C -0.12 -2.36 3.72 -26.73 -0.10 -2.45 16 8 C 0.16 3.38 3.17 -66.95 -0.21 3.17 16 9 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 10 C -0.12 -2.22 5.68 -24.89 -0.14 -2.36 16 11 C -0.15 -2.91 7.08 -24.58 -0.17 -3.09 16 12 C 0.17 4.25 5.45 -2.53 -0.01 4.24 16 13 N -0.60 -15.27 3.13 -162.57 -0.51 -15.78 16 14 C -0.22 -6.21 9.73 -15.06 -0.15 -6.36 16 15 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 17 N -0.92 -27.24 10.50 55.49 0.58 -26.66 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.05 0.70 4.86 -3.83 -0.02 0.68 16 23 C -0.11 -1.34 5.38 -26.65 -0.14 -1.48 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 32 H 0.03 0.41 7.57 -51.93 -0.39 0.01 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.51 7.86 -51.93 -0.41 1.10 16 35 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.07 2.02 6.78 -51.93 -0.35 1.66 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.09 1.42 5.94 -51.93 -0.31 1.11 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -29.35 344.58 -10.96 -40.30 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.93 Total: -1.63 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.14 Total: -9.86 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -1.05 Total: -51.33 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.35 -10.96 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648026340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.596 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds