Wall clock time and date at job start Mon Mar 30 2020 00:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 120.00184 * 2 1 4 4 H 1.08004 * 119.99485 * 322.03831 * 3 2 1 5 5 C 1.38805 * 120.00108 * 142.04471 * 3 2 1 6 6 N 1.31617 * 120.00092 * 157.02160 * 5 3 2 7 7 Si 1.86798 * 120.00080 * 337.01431 * 5 3 2 8 8 H 1.48499 * 109.46980 * 95.68903 * 7 5 3 9 9 H 1.48504 * 109.47154 * 215.68444 * 7 5 3 10 10 H 1.48498 * 109.47129 * 335.68686 * 7 5 3 11 11 C 1.46504 * 120.00142 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47028 * 90.00126 * 11 2 1 13 13 N 1.46498 * 109.46828 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99578 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00256 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00012 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47486 * 179.97438 * 16 14 13 18 18 C 1.29450 * 117.95866 * 94.73001 * 17 16 14 19 19 C 1.50063 * 124.07042 * 180.75204 * 18 17 16 20 20 C 1.53018 * 110.15048 * 342.87269 * 19 18 17 21 21 C 1.53391 * 108.43913 * 49.43567 * 20 19 18 22 22 C 1.50061 * 117.96449 * 274.99898 * 17 16 14 23 23 H 1.08997 * 109.47326 * 265.65567 * 1 2 3 24 24 H 1.08998 * 109.46871 * 25.65729 * 1 2 3 25 25 H 1.09000 * 109.47175 * 145.65978 * 1 2 3 26 26 H 0.96998 * 120.00553 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46769 * 330.00155 * 11 2 1 28 28 H 1.09000 * 109.47426 * 210.00454 * 11 2 1 29 29 H 1.08998 * 109.46875 * 60.00193 * 12 11 2 30 30 H 1.09000 * 109.46760 * 300.00449 * 12 11 2 31 31 H 0.96993 * 120.00406 * 359.97438 * 13 12 11 32 32 H 1.09002 * 109.47041 * 59.99235 * 16 14 13 33 33 H 1.09000 * 109.46920 * 299.99678 * 16 14 13 34 34 H 1.07994 * 117.96035 * 0.73357 * 18 17 16 35 35 H 1.09009 * 109.35893 * 222.66226 * 19 18 17 36 36 H 1.09005 * 109.36066 * 103.08203 * 19 18 17 37 37 H 1.09003 * 109.64154 * 289.74865 * 20 19 18 38 38 H 1.09009 * 109.64342 * 169.12206 * 20 19 18 39 39 H 1.09007 * 109.64398 * 172.87973 * 21 20 19 40 40 H 1.08998 * 109.64170 * 52.25024 * 21 20 19 41 41 H 1.09000 * 109.35654 * 282.79552 * 22 17 16 42 42 H 1.09007 * 109.35468 * 42.51418 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3176 1.3130 0.7393 6 7 4.2044 2.2304 0.4163 7 14 3.6306 0.1823 2.1929 8 1 4.4682 -0.9638 1.7571 9 1 4.3371 0.9337 3.2614 10 1 2.3353 -0.3217 2.7158 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 3.5219 -3.5639 -2.6081 15 8 3.2190 -3.0390 -3.6586 16 6 4.2754 -4.8690 -2.6076 17 6 4.5265 -5.3048 -4.0282 18 6 5.6589 -4.9875 -4.5691 19 6 6.0452 -5.3360 -5.9767 20 6 5.1370 -6.4445 -6.5134 21 6 3.6794 -6.0515 -6.2418 22 6 3.4458 -6.0741 -4.7297 23 1 -0.3634 -0.0778 1.0247 24 1 -0.3633 0.9263 -0.4450 25 1 -0.3633 -0.8485 -0.5797 26 1 5.0204 2.3195 0.9331 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9516 -1.9558 30 1 1.5001 -1.8415 -1.9555 31 1 3.4271 -3.3996 -0.6010 32 1 3.6862 -5.6285 -2.0936 33 1 5.2276 -4.7385 -2.0935 34 1 6.3697 -4.4375 -3.9703 35 1 7.0804 -5.6773 -5.9933 36 1 5.9481 -4.4523 -6.6074 37 1 5.3644 -7.3821 -6.0061 38 1 5.2921 -6.5579 -7.5864 39 1 3.0115 -6.7637 -6.7264 40 1 3.4924 -5.0490 -6.6265 41 1 3.4509 -7.1060 -4.3786 42 1 2.4789 -5.6220 -4.5087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663154296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:58 Heat of formation + Delta-G solvation = -16.847255 kcal Electronic energy + Delta-G solvation = -20236.262517 eV Core-core repulsion = 17216.546948 eV Total energy + Delta-G solvation = -3019.715569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.73868 -38.20002 -36.29898 -34.01536 -32.92210 -31.64331 -30.81305 -29.12408 -27.07743 -26.06073 -23.44030 -23.03403 -21.75847 -20.91428 -20.08908 -17.62931 -17.15145 -16.32117 -16.12743 -15.56047 -15.30150 -14.93608 -14.42067 -14.05406 -13.82928 -13.59027 -13.44180 -13.11854 -12.81037 -12.62400 -12.49790 -12.27737 -12.16915 -11.95719 -11.61236 -11.54631 -11.04849 -10.89043 -10.68013 -10.55273 -10.52073 -10.29822 -9.99497 -9.70912 -9.58163 -8.76190 -8.66292 -8.52682 -6.90718 -6.05092 -3.47508 2.18685 2.94715 3.21735 3.40536 3.45906 3.60972 4.46147 4.51837 4.61429 4.81874 4.98881 5.06229 5.11800 5.19855 5.28803 5.34904 5.37339 5.49836 5.51568 5.57901 5.71838 5.75969 5.83507 5.83735 5.86704 5.99218 6.09085 6.13471 6.24470 6.24676 6.49680 6.61547 6.64524 6.68117 6.74531 6.90419 6.99129 7.83627 7.99166 8.33480 8.55634 8.91407 9.64385 10.04196 11.10322 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003901 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.414181 B = 7175.102229 C = 7473.658860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.607 5.607 3 C -0.275 4.275 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.895 5.895 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.269 1.269 11 C 0.129 3.871 12 C 0.100 3.900 13 N -0.729 5.729 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.150 4.150 19 C -0.087 4.087 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.078 4.078 23 H 0.009 0.991 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.395 0.605 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -19.606 -7.443 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.331 5.331 3 C -0.404 4.404 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.535 5.535 7 Si 0.708 3.292 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.194 1.194 11 C 0.003 3.997 12 C -0.025 4.025 13 N -0.380 5.380 14 C 0.294 3.706 15 O -0.413 6.413 16 C -0.152 4.152 17 C -0.099 4.099 18 C -0.168 4.168 19 C -0.124 4.124 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.115 4.115 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.934 -19.065 -8.149 20.755 hybrid contribution 0.500 -0.599 1.432 1.631 sum 1.434 -19.665 -6.717 20.830 Atomic orbital electron populations 1.21115 0.84101 0.99334 0.97538 1.43919 1.00968 1.01634 1.86602 1.18824 1.06300 0.90690 1.24537 0.90209 1.25492 0.96712 0.96513 0.97713 1.69888 1.08347 1.36087 1.39220 0.86913 0.77886 0.80016 0.84373 1.21412 1.22714 1.19401 1.21321 0.96910 0.88515 0.93000 1.22222 0.95755 0.83550 1.00977 1.46151 1.58607 1.25170 1.08103 1.20529 0.79765 0.86289 0.83985 1.90699 1.54340 1.65022 1.31194 1.20880 1.01799 0.95713 0.96783 1.20264 0.95438 0.99696 0.94472 1.21859 0.97535 1.00505 0.96881 1.20399 0.99111 0.98811 0.94091 1.21600 0.95294 0.98353 1.00425 1.21579 0.96296 1.02002 0.95769 1.20325 0.97562 0.98854 0.94781 0.97291 0.93383 0.95351 0.92613 0.93847 0.92449 0.90737 0.92384 0.77212 0.88659 0.88627 0.88105 0.91382 0.90851 0.91947 0.91935 0.91939 0.91372 0.91339 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.48 10.70 59.85 0.64 3.12 16 2 N -0.61 -14.51 2.47 -181.12 -0.45 -14.96 16 3 C -0.28 -7.73 9.88 -15.06 -0.15 -7.88 16 4 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 6 N -0.89 -27.25 13.97 55.49 0.78 -26.47 16 7 Si 0.88 21.71 25.10 -169.99 -4.27 17.44 16 8 H -0.29 -6.70 6.68 56.52 0.38 -6.32 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.13 2.71 4.65 -4.04 -0.02 2.69 16 12 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 13 N -0.73 -11.72 5.56 -60.29 -0.33 -12.06 16 14 C 0.51 8.24 7.82 -10.98 -0.09 8.16 16 15 O -0.54 -10.92 16.03 5.56 0.09 -10.83 16 16 C -0.11 -1.30 5.71 -29.03 -0.17 -1.47 16 17 C -0.10 -1.19 4.33 -100.95 -0.44 -1.63 16 18 C -0.15 -1.79 9.37 -35.90 -0.34 -2.12 16 19 C -0.09 -0.88 6.11 -28.18 -0.17 -1.05 16 20 C -0.12 -1.07 6.01 -26.52 -0.16 -1.23 16 21 C -0.12 -1.21 6.01 -26.52 -0.16 -1.37 16 22 C -0.08 -0.86 5.80 -28.18 -0.16 -1.02 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 25 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.06 1.30 3.38 -51.93 -0.18 1.13 16 29 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.39 5.15 8.47 -40.82 -0.35 4.80 16 32 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.10 0.97 7.80 -51.93 -0.41 0.56 16 34 H 0.10 1.19 7.74 -52.49 -0.41 0.79 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -32.97 337.28 -7.67 -40.64 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.24 Total: 2.01 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.32 Total: -0.86 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.01 Total: -53.49 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.27 Total: 17.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.97 -7.67 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663154296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.793 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds