Wall clock time and date at job start Mon Mar 30 2020 00:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 120.00184 * 2 1 4 4 H 1.08004 * 119.99485 * 322.03831 * 3 2 1 5 5 C 1.38805 * 120.00108 * 142.04471 * 3 2 1 6 6 N 1.31617 * 120.00092 * 157.02160 * 5 3 2 7 7 Si 1.86798 * 120.00080 * 337.01431 * 5 3 2 8 8 H 1.48499 * 109.46980 * 95.68903 * 7 5 3 9 9 H 1.48504 * 109.47154 * 215.68444 * 7 5 3 10 10 H 1.48498 * 109.47129 * 335.68686 * 7 5 3 11 11 C 1.46504 * 120.00142 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47028 * 90.00126 * 11 2 1 13 13 N 1.46498 * 109.46828 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99578 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00256 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00012 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47486 * 179.97438 * 16 14 13 18 18 C 1.29450 * 117.95866 * 94.73001 * 17 16 14 19 19 C 1.50063 * 124.07042 * 180.75204 * 18 17 16 20 20 C 1.53018 * 110.15048 * 342.87269 * 19 18 17 21 21 C 1.53391 * 108.43913 * 49.43567 * 20 19 18 22 22 C 1.50061 * 117.96449 * 274.99898 * 17 16 14 23 23 H 1.08997 * 109.47326 * 265.65567 * 1 2 3 24 24 H 1.08998 * 109.46871 * 25.65729 * 1 2 3 25 25 H 1.09000 * 109.47175 * 145.65978 * 1 2 3 26 26 H 0.96998 * 120.00553 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46769 * 330.00155 * 11 2 1 28 28 H 1.09000 * 109.47426 * 210.00454 * 11 2 1 29 29 H 1.08998 * 109.46875 * 60.00193 * 12 11 2 30 30 H 1.09000 * 109.46760 * 300.00449 * 12 11 2 31 31 H 0.96993 * 120.00406 * 359.97438 * 13 12 11 32 32 H 1.09002 * 109.47041 * 59.99235 * 16 14 13 33 33 H 1.09000 * 109.46920 * 299.99678 * 16 14 13 34 34 H 1.07994 * 117.96035 * 0.73357 * 18 17 16 35 35 H 1.09009 * 109.35893 * 222.66226 * 19 18 17 36 36 H 1.09005 * 109.36066 * 103.08203 * 19 18 17 37 37 H 1.09003 * 109.64154 * 289.74865 * 20 19 18 38 38 H 1.09009 * 109.64342 * 169.12206 * 20 19 18 39 39 H 1.09007 * 109.64398 * 172.87973 * 21 20 19 40 40 H 1.08998 * 109.64170 * 52.25024 * 21 20 19 41 41 H 1.09000 * 109.35654 * 282.79552 * 22 17 16 42 42 H 1.09007 * 109.35468 * 42.51418 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3176 1.3130 0.7393 6 7 4.2044 2.2304 0.4163 7 14 3.6306 0.1823 2.1929 8 1 4.4682 -0.9638 1.7571 9 1 4.3371 0.9337 3.2614 10 1 2.3353 -0.3217 2.7158 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 3.5219 -3.5639 -2.6081 15 8 3.2190 -3.0390 -3.6586 16 6 4.2754 -4.8690 -2.6076 17 6 4.5265 -5.3048 -4.0282 18 6 5.6589 -4.9875 -4.5691 19 6 6.0452 -5.3360 -5.9767 20 6 5.1370 -6.4445 -6.5134 21 6 3.6794 -6.0515 -6.2418 22 6 3.4458 -6.0741 -4.7297 23 1 -0.3634 -0.0778 1.0247 24 1 -0.3633 0.9263 -0.4450 25 1 -0.3633 -0.8485 -0.5797 26 1 5.0204 2.3195 0.9331 27 1 1.6084 -2.0281 0.5147 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9516 -1.9558 30 1 1.5001 -1.8415 -1.9555 31 1 3.4271 -3.3996 -0.6010 32 1 3.6862 -5.6285 -2.0936 33 1 5.2276 -4.7385 -2.0935 34 1 6.3697 -4.4375 -3.9703 35 1 7.0804 -5.6773 -5.9933 36 1 5.9481 -4.4523 -6.6074 37 1 5.3644 -7.3821 -6.0061 38 1 5.2921 -6.5579 -7.5864 39 1 3.0115 -6.7637 -6.7264 40 1 3.4924 -5.0490 -6.6265 41 1 3.4509 -7.1060 -4.3786 42 1 2.4789 -5.6220 -4.5087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663154296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:57 Heat of formation + Delta-G solvation = -38.736340 kcal Electronic energy + Delta-G solvation = -20237.211699 eV Core-core repulsion = 17216.546948 eV Total energy + Delta-G solvation = -3020.664751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95667 -39.19496 -38.04357 -35.58178 -33.90203 -33.68754 -31.62725 -30.58212 -28.29631 -27.86501 -24.82610 -24.11122 -22.80428 -22.63052 -21.39352 -18.92261 -18.48473 -17.87708 -17.52417 -17.11436 -16.57647 -16.19950 -15.70879 -15.33581 -15.23695 -14.81172 -14.64670 -14.57054 -14.29572 -14.17482 -13.75425 -13.46497 -13.30019 -13.11510 -12.99545 -12.75972 -12.58554 -12.47083 -12.34418 -11.93963 -11.65665 -11.58563 -11.33412 -11.11092 -10.96886 -10.69099 -10.08069 -9.66501 -8.86087 -8.24146 -5.65523 1.24615 1.27488 1.41797 1.53808 1.67643 2.30343 2.40040 3.04130 3.47119 3.65130 3.80293 3.99365 4.07145 4.09066 4.20432 4.29669 4.36571 4.46859 4.48805 4.56465 4.68866 4.69753 4.74409 4.75646 4.88327 4.97846 4.99759 5.03815 5.09147 5.09486 5.13163 5.19580 5.32449 5.44000 5.47449 5.75188 5.88940 6.10888 6.12240 6.59842 6.92034 7.30324 7.55902 7.96585 8.95587 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003901 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.414181 B = 7175.102229 C = 7473.658860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.623 5.623 3 C -0.274 4.274 4 H 0.035 0.965 5 C -0.022 4.022 6 N -0.948 5.948 7 Si 0.950 3.050 8 H -0.262 1.262 9 H -0.307 1.307 10 H -0.254 1.254 11 C 0.130 3.870 12 C 0.118 3.882 13 N -0.719 5.719 14 C 0.505 3.495 15 O -0.585 6.585 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.161 4.161 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.079 4.079 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.265 0.735 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.414 0.586 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -23.368 -6.199 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.347 5.347 3 C -0.404 4.404 4 H 0.053 0.947 5 C -0.219 4.219 6 N -0.591 5.591 7 Si 0.777 3.223 8 H -0.188 1.188 9 H -0.235 1.235 10 H -0.177 1.177 11 C 0.004 3.996 12 C -0.009 4.009 13 N -0.372 5.372 14 C 0.293 3.707 15 O -0.465 6.465 16 C -0.142 4.142 17 C -0.113 4.113 18 C -0.179 4.179 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.116 4.116 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.250 0.750 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.826 -22.884 -6.885 23.912 hybrid contribution 0.477 0.628 0.928 1.217 sum 1.303 -22.256 -5.958 23.077 Atomic orbital electron populations 1.21235 0.81812 1.00310 0.98900 1.44069 1.02560 1.01227 1.86887 1.18689 1.06568 0.91530 1.23630 0.94688 1.26212 0.96404 0.98903 1.00394 1.70035 1.09212 1.39145 1.40680 0.85753 0.78592 0.78377 0.79557 1.18850 1.23538 1.17736 1.21399 0.96670 0.88103 0.93438 1.21728 0.95164 0.84149 0.99877 1.45983 1.58136 1.23769 1.09356 1.21401 0.78965 0.87330 0.82963 1.90685 1.56236 1.66598 1.32937 1.20924 1.02460 0.93491 0.97320 1.20506 0.95745 1.00079 0.94997 1.22094 0.97754 1.00272 0.97761 1.20462 1.00459 0.98912 0.92942 1.21590 0.93943 0.98255 1.01372 1.21595 0.97718 1.01030 0.95523 1.20363 0.96183 0.99869 0.95162 0.95693 0.94265 0.92343 0.92651 0.89656 0.93848 0.95623 0.92550 0.74951 0.85278 0.86620 0.88487 0.89727 0.92047 0.90651 0.90648 0.90232 0.93987 0.88905 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.64 10.70 127.77 1.37 6.00 16 2 N -0.62 -29.20 2.47 -726.93 -1.79 -30.99 16 3 C -0.27 -15.83 9.88 84.03 0.83 -15.00 16 4 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 5 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 6 N -0.95 -59.65 13.97 21.65 0.30 -59.35 16 7 Si 0.95 44.32 25.10 68.60 1.72 46.04 16 8 H -0.26 -11.11 6.68 99.48 0.66 -10.44 16 9 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 10 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 11 C 0.13 5.13 4.65 86.38 0.40 5.53 16 12 C 0.12 4.59 6.00 86.38 0.52 5.11 16 13 N -0.72 -21.68 5.56 -463.06 -2.57 -24.25 16 14 C 0.51 15.70 7.82 87.66 0.69 16.39 16 15 O -0.58 -24.08 16.03 -3.02 -0.05 -24.13 16 16 C -0.10 -2.10 5.71 29.10 0.17 -1.93 16 17 C -0.11 -2.54 4.33 -15.11 -0.07 -2.60 16 18 C -0.16 -3.64 9.37 27.03 0.25 -3.39 16 19 C -0.09 -1.72 6.11 29.65 0.18 -1.54 16 20 C -0.11 -1.82 6.01 30.73 0.18 -1.63 16 21 C -0.12 -2.30 6.01 30.73 0.18 -2.12 16 22 C -0.08 -1.58 5.80 29.65 0.17 -1.41 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 25 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 26 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 28 H 0.04 1.85 3.38 -2.39 -0.01 1.84 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.41 9.30 8.47 -92.71 -0.79 8.51 16 32 H 0.13 1.79 8.11 -2.39 -0.02 1.78 16 33 H 0.12 1.94 7.80 -2.39 -0.02 1.92 16 34 H 0.10 2.20 7.74 -2.91 -0.02 2.18 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -74.92 337.28 3.10 -71.82 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.16 Total: 18.30 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.33 Total: 2.56 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.06 Total: -114.59 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.72 Total: 46.04 kcal Total: -74.92 3.10 -71.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663154296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.085 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds