Wall clock time and date at job start Mon Mar 30 2020 00:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 119.99847 * 2 1 4 4 H 1.08001 * 120.00004 * 162.18823 * 3 2 1 5 5 C 1.38806 * 120.00211 * 341.91917 * 3 2 1 6 6 N 1.31621 * 119.99974 * 344.88655 * 5 3 2 7 7 Si 1.86800 * 120.00413 * 164.88828 * 5 3 2 8 8 H 1.48507 * 109.46812 * 89.99682 * 7 5 3 9 9 H 1.48497 * 109.47530 * 209.99924 * 7 5 3 10 10 H 1.48502 * 109.47138 * 329.99999 * 7 5 3 11 11 C 1.46500 * 120.00245 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46848 * 270.00165 * 11 2 1 13 13 N 1.46500 * 109.46848 * 179.97438 * 12 11 2 14 14 C 1.34780 * 120.00235 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99304 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00231 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.55907 * 34.33382 * 16 14 13 18 18 C 1.53092 * 117.51118 * 248.60781 * 16 14 13 19 19 C 1.52555 * 117.50787 * 180.11057 * 16 14 13 20 20 C 1.53868 * 120.83050 * 357.25492 * 19 16 14 21 21 C 1.54980 * 104.06471 * 192.35070 * 20 19 16 22 22 C 1.54924 * 102.82039 * 37.56834 * 21 20 19 23 23 C 1.53486 * 121.08929 * 217.87803 * 19 16 14 24 24 H 1.09003 * 109.47252 * 84.99334 * 1 2 3 25 25 H 1.09001 * 109.47041 * 204.99227 * 1 2 3 26 26 H 1.08999 * 109.47558 * 324.99146 * 1 2 3 27 27 H 0.96998 * 120.00072 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47127 * 30.00270 * 11 2 1 29 29 H 1.09003 * 109.46987 * 150.00115 * 11 2 1 30 30 H 1.09002 * 109.47130 * 299.99219 * 12 11 2 31 31 H 1.08992 * 109.47262 * 59.99690 * 12 11 2 32 32 H 0.96998 * 120.00146 * 359.97438 * 13 12 11 33 33 H 1.08999 * 117.50805 * 0.02562 * 18 16 14 34 34 H 1.09001 * 117.50704 * 145.08565 * 18 16 14 35 35 H 1.09002 * 110.50681 * 310.99872 * 20 19 16 36 36 H 1.09004 * 110.50806 * 73.69978 * 20 19 16 37 37 H 1.08998 * 110.74527 * 279.23381 * 21 20 19 38 38 H 1.09010 * 110.89953 * 155.97382 * 21 20 19 39 39 H 1.09003 * 110.48140 * 203.59391 * 22 21 20 40 40 H 1.09006 * 110.48175 * 80.96993 * 22 21 20 41 41 H 1.09007 * 110.06989 * 263.32071 * 23 19 16 42 42 H 1.08995 * 110.07109 * 24.84905 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1908 1.2084 0.2861 5 6 1.5070 2.3584 -0.3731 6 7 0.3527 2.3043 -1.0033 7 14 2.2803 4.0129 0.0191 8 1 3.1569 4.4286 -1.1053 9 1 1.2115 5.0253 0.2139 10 1 3.0875 3.9003 1.2605 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5218 -3.5639 2.6081 15 8 3.2189 -3.0390 3.6587 16 6 4.2743 -4.8696 2.6075 17 1 4.9891 -5.0000 1.7950 18 6 3.5324 -6.1136 3.1032 19 6 4.6248 -5.4814 3.9603 20 6 4.2757 -4.7525 5.2697 21 6 5.0671 -5.5267 6.3542 22 6 6.3942 -5.8696 5.6322 23 6 5.9660 -6.1931 4.1847 24 1 -0.3634 0.0897 -1.0238 25 1 -0.3633 -0.9314 0.4342 26 1 -0.3634 0.8417 0.5895 27 1 -0.0962 3.1236 -1.2643 28 1 1.6085 -2.0281 -0.5148 29 1 3.1499 -1.1381 -0.5143 30 1 3.0416 -0.9516 1.9559 31 1 1.5001 -1.8415 1.9555 32 1 3.4264 -3.4000 0.6010 33 1 2.4999 -5.9875 3.4293 34 1 3.7596 -7.0623 2.6171 35 1 4.6023 -3.7135 5.2271 36 1 3.2047 -4.8095 5.4646 37 1 4.5388 -6.4353 6.6429 38 1 5.2525 -4.8967 7.2243 39 1 6.8661 -6.7373 6.0933 40 1 7.0693 -5.0138 5.6481 41 1 5.8435 -7.2693 4.0625 42 1 6.7103 -5.8188 3.4819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713472671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:17 Heat of formation + Delta-G solvation = -2.263462 kcal Electronic energy + Delta-G solvation = -20099.742876 eV Core-core repulsion = 17080.659708 eV Total energy + Delta-G solvation = -3019.083169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25993 -38.13740 -36.02474 -34.23632 -34.10777 -31.31520 -28.81398 -28.35378 -25.94676 -25.70632 -24.36638 -22.61696 -20.84529 -20.65457 -20.07690 -18.84126 -16.97374 -16.61723 -15.81968 -15.56847 -15.10503 -14.91104 -14.54390 -14.08530 -13.66361 -13.49905 -13.31328 -12.91969 -12.57918 -12.40665 -12.31254 -12.21925 -11.27795 -11.17631 -11.14686 -10.99196 -10.88967 -10.83624 -10.68369 -10.61819 -10.37470 -10.31028 -9.97949 -9.94309 -9.87757 -9.33935 -8.66332 -8.53742 -6.84927 -5.74182 -3.17112 2.68877 3.35016 3.39911 3.45839 3.49332 3.71985 4.31102 4.46851 4.52361 4.67478 4.74376 4.97669 5.01421 5.14543 5.37518 5.39363 5.49510 5.53896 5.61536 5.63839 5.64934 5.74826 5.81797 5.85156 5.85477 5.94818 5.99712 6.08132 6.25688 6.27482 6.43466 6.63293 6.66531 6.77389 6.91795 7.40643 7.69282 7.81008 7.81680 8.35143 8.52191 9.21422 9.84738 10.30794 11.31434 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033401 B = 0.003375 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.099037 B = 8293.188829 C = 8700.043063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.721 5.721 14 C 0.536 3.464 15 O -0.539 6.539 16 C -0.181 4.181 17 H 0.120 0.880 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.089 4.089 24 H 0.030 0.970 25 H -0.003 1.003 26 H 0.047 0.953 27 H 0.253 0.747 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.396 0.604 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 -19.027 8.206 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.215 1.215 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.372 5.372 14 C 0.322 3.678 15 O -0.416 6.416 16 C -0.203 4.203 17 H 0.138 0.862 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.126 4.126 24 H 0.048 0.952 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.725 -18.444 8.879 22.252 hybrid contribution 0.439 0.804 -0.458 1.025 sum 9.165 -17.639 8.421 21.588 Atomic orbital electron populations 1.20844 0.82117 0.95715 0.99506 1.43834 1.02075 1.00337 1.85955 1.19223 0.95640 0.84671 1.39183 0.91150 1.24926 0.97596 0.98328 0.98873 1.70110 1.17398 1.26560 1.41274 0.86251 0.78202 0.83814 0.78256 1.21438 1.21521 1.20491 1.20824 0.96629 0.89076 0.91900 1.22407 0.95604 0.83087 1.01950 1.46059 1.58142 1.24997 1.07996 1.19626 0.79165 0.85056 0.84000 1.90683 1.54839 1.64968 1.31147 1.22328 1.04218 0.93404 1.00304 0.86192 1.23019 0.97729 0.94868 1.02356 1.21752 0.96217 1.00189 0.91352 1.21860 1.00018 0.99212 0.90265 1.22567 0.95962 1.00052 0.98003 1.22339 0.97641 1.01093 0.94940 1.21674 0.94234 0.99464 0.97247 0.95209 0.98399 0.93378 0.93716 0.94091 0.93037 0.91611 0.92345 0.77053 0.88260 0.87990 0.89834 0.91481 0.91799 0.91636 0.91786 0.91558 0.91386 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.97 59.84 0.54 4.60 16 2 N -0.60 -15.18 2.93 -181.12 -0.53 -15.71 16 3 C -0.26 -7.16 9.69 -15.06 -0.15 -7.31 16 4 H 0.07 1.91 7.88 -52.49 -0.41 1.49 16 5 C 0.00 0.02 5.07 -17.43 -0.09 -0.07 16 6 N -0.91 -26.66 10.54 55.49 0.59 -26.07 16 7 Si 0.91 22.11 29.58 -169.99 -5.03 17.08 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.14 2.88 5.76 -4.04 -0.02 2.86 16 12 C 0.10 1.78 6.00 -4.04 -0.02 1.76 16 13 N -0.72 -10.65 5.56 -60.30 -0.33 -10.99 16 14 C 0.54 8.18 7.61 -10.99 -0.08 8.09 16 15 O -0.54 -10.19 13.70 5.55 0.08 -10.12 16 16 C -0.18 -2.03 6.06 -91.96 -0.56 -2.59 16 17 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 18 C -0.14 -1.38 9.94 -26.91 -0.27 -1.65 16 19 C -0.09 -1.01 2.45 -154.26 -0.38 -1.39 16 20 C -0.08 -0.93 4.77 -25.23 -0.12 -1.05 16 21 C -0.13 -1.21 6.91 -24.67 -0.17 -1.38 16 22 C -0.12 -1.03 6.84 -24.99 -0.17 -1.20 16 23 C -0.09 -0.76 6.55 -25.76 -0.17 -0.93 16 24 H 0.03 0.79 7.47 -51.93 -0.39 0.40 16 25 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 26 H 0.05 1.30 7.05 -51.93 -0.37 0.93 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.40 4.61 8.47 -40.82 -0.35 4.26 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.22 6.97 -51.93 -0.36 0.86 16 36 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -31.70 338.10 -9.13 -40.83 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.33 Total: 0.14 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.66 Total: -0.25 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.28 Total: -52.77 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.70 -9.13 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713472671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.564 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds